Literature DB >> 24773013

Clearance mechanism assignment and total clearance prediction in human based upon in silico models.

Franco Lombardo1, R Scott Obach, Manthena V Varma, Rowan Stringer, Giuliano Berellini.   

Abstract

We introduce a two-tier model based on an exhaustive data set, where discriminant models based on principal component analysis (PCA) and partial least squares (PLS) are used separately and in conjunction, and we show that PCA is highly discriminant approaching 95% accuracy in the assignment of the primary clearance mechanism. Furthermore, the PLS model achieved a quantitative predictive performance comparable to methods based on scaling of animal data while not requiring the use of either in vivo or in vitro data, thus sparing the use of animal. This is likely the highest performance that can be expected from a computational approach, and further improvements may be difficult to reach. We further offer the medicinal scientist a PCA model to guide in vitro and/or in vivo studies to help limit the use of resources via very rapid computations.

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Year:  2014        PMID: 24773013     DOI: 10.1021/jm500436v

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  13 in total

1.  Predicting Clearance Mechanism in Drug Discovery: Extended Clearance Classification System (ECCS).

Authors:  Manthena V Varma; Stefanus J Steyn; Charlotte Allerton; Ayman F El-Kattan
Journal:  Pharm Res       Date:  2015-07-09       Impact factor: 4.200

2.  An Intuitive Approach for Predicting Potential Human Health Risk with the Tox21 10k Library.

Authors:  Nisha S Sipes; John F Wambaugh; Robert Pearce; Scott S Auerbach; Barbara A Wetmore; Jui-Hua Hsieh; Andrew J Shapiro; Daniel Svoboda; Michael J DeVito; Stephen S Ferguson
Journal:  Environ Sci Technol       Date:  2017-09-06       Impact factor: 9.028

Review 3.  Drug Disposition Classification Systems in Discovery and Development: A Comparative Review of the BDDCS, ECCS and ECCCS Concepts.

Authors:  Gian P Camenisch
Journal:  Pharm Res       Date:  2016-07-20       Impact factor: 4.200

4.  Projecting ADME Behavior and Drug-Drug Interactions in Early Discovery and Development: Application of the Extended Clearance Classification System.

Authors:  Ayman F El-Kattan; Manthena V Varma; Stefan J Steyn; Dennis O Scott; Tristan S Maurer; Arthur Bergman
Journal:  Pharm Res       Date:  2016-09-12       Impact factor: 4.200

5.  Predicting the Drug Clearance Pathway with Structural Descriptors.

Authors:  Navid Kaboudi; Ali Shayanfar
Journal:  Eur J Drug Metab Pharmacokinet       Date:  2022-02-11       Impact factor: 2.441

6.  Combining machine learning and quantum mechanics yields more chemically aware molecular descriptors for medicinal chemistry applications.

Authors:  Sara Tortorella; Emanuele Carosati; Giulia Sorbi; Giovanni Bocci; Simon Cross; Gabriele Cruciani; Loriano Storchi
Journal:  J Comput Chem       Date:  2021-08-19       Impact factor: 3.672

Review 7.  Considerations for Improving Metabolism Predictions for In Vitro to In Vivo Extrapolation.

Authors:  Marjory Moreau; Pankajini Mallick; Marci Smeltz; Saad Haider; Chantel I Nicolas; Salil N Pendse; Jeremy A Leonard; Matthew W Linakis; Patrick D McMullen; Rebecca A Clewell; Harvey J Clewell; Miyoung Yoon
Journal:  Front Toxicol       Date:  2022-04-29

8.  Evaluating the Impact of Uncertainties in Clearance and Exposure When Prioritizing Chemicals Screened in High-Throughput Assays.

Authors:  Jeremy A Leonard; Ashley Sobel Leonard; Daniel T Chang; Stephen Edwards; Jingtao Lu; Steven Scholle; Phillip Key; Maxwell Winter; Kristin Isaacs; Yu-Mei Tan
Journal:  Environ Sci Technol       Date:  2016-05-12       Impact factor: 9.028

9.  ADME-Space: a new tool for medicinal chemists to explore ADME properties.

Authors:  Giovanni Bocci; Emanuele Carosati; Philippe Vayer; Alban Arrault; Sylvain Lozano; Gabriele Cruciani
Journal:  Sci Rep       Date:  2017-07-25       Impact factor: 4.379

10.  How to Choose In Vitro Systems to Predict In Vivo Drug Clearance: A System Pharmacology Perspective.

Authors:  Lei Wang; ChienWei Chiang; Hong Liang; Hengyi Wu; Weixing Feng; Sara K Quinney; Jin Li; Lang Li
Journal:  Biomed Res Int       Date:  2015-10-11       Impact factor: 3.411

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