Literature DB >> 24765059

5-Chloro-5''-(4-chloro-benzyl-idene)-4'-(4-chloro-phen-yl)-1',1''-dimethyldi-spiro-[indoline-3,2'-pyrrolidine-3',3''-piperidine]-2,4''-dione.

I S Ahmed Farag1, Adel S Girgis2, A A Ramadan3, A M Moustafa1, Ahmed F Mabied1.   

Abstract

The racemic title compound, C30H26Cl3N3O2, comprises two spiro links, the first connecting the piperidine and pyrrolidine rings and the other connecting the indole and pyrrolidine rings. The piperidine ring adopts a half-chair conformation, while the pyrrolidine ring has an envelope conformation with the unsubstituted C atom as the flap. The dihedral angles between the two p-Cl-substituted benzene rings and the indole ring are 33.13 (14) and 54.11 (14)°. In the crystal, mol-ecules form inversion dimers through pairs of N-H⋯O hydrogen bonds [graph set R 2 (2)(8)]. Aromatic C-H⋯O hydrogen bonds extend these dimers into a ribbon structure, enclosing R (2) 2(14) ring motifs, along the a-axis direction.

Entities:  

Year:  2014        PMID: 24765059      PMCID: PMC3998502          DOI: 10.1107/S1600536814004309

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of related di­spiro-oxindole analogues, see: Girgis et al. (2009a ▶,b ▶, 2012 ▶); George et al. (2013 ▶). For related structural studies, see: Farag et al. (2014a ▶,b ▶,c ▶); Moustafa et al. (2012 ▶). For the synthesis of the precursor mol­ecule, see: Modzelewska et al. (2006 ▶). For graph-set analysis, see: Etter et al. (1990 ▶). For details of the weighting scheme used, see: Watkin et al. (1994 ▶). H atoms were refined with riding constraints (Cooper et al., 2010 ▶).

Experimental

Crystal data

C30H26Cl3N3O2 M = 566.91 Triclinic, a = 11.2102 (3) Å b = 11.5909 (3) Å c = 12.3569 (4) Å α = 99.0734 (8)° β = 90.1887 (9)° γ = 116.4041 (10)° V = 1415.22 (7) Å3 Z = 2 Mo Kα radiation μ = 0.36 mm−1 T = 298 K 0.35 × 0.19 × 0.10 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan [Görbitz (1999 ▶) and DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶)] T min = 0.630, T max = 0.876 16419 measured reflections 6508 independent reflections 3663 reflections with I > 2σ(I) R int = 0.076

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.111 S = 1.01 3663 reflections 344 parameters H-atom parameters constrained Δρmax = 0.55 e Å−3 Δρmin = −0.54 e Å−3 Data collection: COLLECT (Nonius, 2001 ▶).; cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: CAMERON (Watkin et al., 1996 ▶) and DIAMOND (Brandenburg, 2012 ▶); software used to prepare material for publication: CRYSTALS; software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) New_Global_Publ_Block, I. DOI: 10.1107/S1600536814004309/zs2286sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814004309/zs2286Isup2.hkl CCDC reference: 988672 Additional supporting information: crystallographic information; 3D view; checkCIF report
C30H26Cl3N3O2Z = 2
Mr = 566.91F(000) = 588
Triclinic, P1Dx = 1.330 Mg m3
Hall symbol: -P 1Melting point = 510–512 K
a = 11.2102 (3) ÅMo Kα radiation, λ = 0.71073 Å
b = 11.5909 (3) ÅCell parameters from 8506 reflections
c = 12.3569 (4) Åθ = 3–27°
α = 99.0734 (8)°µ = 0.36 mm1
β = 90.1887 (9)°T = 298 K
γ = 116.4041 (10)°Plate, pale yellow
V = 1415.22 (7) Å30.35 × 0.19 × 0.10 mm
Nonius KappaCCD diffractometer3663 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.076
φ and ω scansθmax = 27.5°, θmin = 3.4°
Absorption correction: multi-scan [Görbitz (1999) and DENZO/SCALEPACK (Otwinowski & Minor, 1997)]h = −14→13
Tmin = 0.630, Tmax = 0.876k = −14→15
16419 measured reflectionsl = −13→16
6508 independent reflections
Refinement on F2Hydrogen site location: difference Fourier map
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.057 Method, part 1, Chebychev polynomial, (Watkin et al., 1994) [weight] = 1.0/[A0*T0(x) + A1*T1(x) ··· + An-1]*Tn-1(x)] where Ai are the Chebychev coefficients listed below and x = F /Fmax Method = Robust Weighting W = [weight] * [1-(deltaF/6*sigmaF)2]2 Ai are: 100. 168. 111. 49.9 14.3
wR(F2) = 0.111(Δ/σ)max = 0.001
S = 1.01Δρmax = 0.55 e Å3
3663 reflectionsΔρmin = −0.54 e Å3
344 parametersExtinction correction: Larson (1970), Equation 22
0 restraintsExtinction coefficient: 400 (70)
xyzUiso*/Ueq
Cl10.60430 (10)0.03618 (8)0.26749 (8)0.0754
C20.6044 (3)0.1352 (3)0.3894 (3)0.0503
C30.6541 (3)0.1232 (3)0.4866 (3)0.0529
C40.6557 (3)0.2027 (3)0.5831 (3)0.0487
C50.6067 (3)0.2943 (2)0.5838 (2)0.0417
C60.5543 (3)0.3014 (3)0.4848 (2)0.0492
C70.5530 (3)0.2237 (3)0.3873 (3)0.0542
C80.6072 (2)0.3840 (2)0.6877 (2)0.0409
C90.5750 (3)0.3253 (3)0.7914 (3)0.0516
N100.6166 (2)0.4411 (2)0.8759 (2)0.0492
C110.7498 (3)0.5363 (2)0.8520 (2)0.0397
C120.7408 (2)0.5121 (2)0.7215 (2)0.0354
C130.8657 (2)0.5050 (2)0.6782 (2)0.0400
N140.9809 (2)0.6228 (2)0.73096 (19)0.0418
C151.1053 (3)0.6102 (3)0.7277 (3)0.0639
C160.9952 (3)0.7356 (2)0.6850 (2)0.0432
C170.8667 (3)0.7462 (2)0.6750 (2)0.0367
C180.7363 (3)0.6297 (2)0.6818 (2)0.0374
O190.63054 (19)0.62778 (19)0.65825 (18)0.0539
C200.8581 (3)0.8543 (2)0.6587 (2)0.0402
C210.9613 (3)0.9854 (3)0.6496 (2)0.0406
C221.0951 (3)1.0193 (3)0.6338 (2)0.0477
C231.1861 (3)1.1452 (3)0.6272 (3)0.0532
C241.1446 (3)1.2413 (3)0.6355 (3)0.0522
Cl251.25982 (10)1.40017 (8)0.62645 (10)0.0835
C261.0126 (3)1.2121 (3)0.6494 (3)0.0598
C270.9234 (3)1.0851 (3)0.6562 (3)0.0521
C280.8616 (3)0.5122 (3)0.9037 (2)0.0482
O290.8737 (2)0.4106 (2)0.88320 (18)0.0582
N300.9342 (3)0.6146 (2)0.9844 (2)0.0591
C310.8905 (3)0.7109 (3)0.9914 (3)0.0578
C320.7834 (3)0.6724 (3)0.9147 (2)0.0466
C330.7187 (3)0.7487 (3)0.9109 (3)0.0559
C340.7670 (5)0.8668 (3)0.9847 (3)0.0756
Cl350.68788 (17)0.96581 (12)0.98031 (12)0.1253
C360.8741 (5)0.9054 (4)1.0601 (3)0.0925
C370.9380 (5)0.8278 (4)1.0642 (3)0.0812
C380.6049 (4)0.4161 (4)0.9884 (3)0.0741
H310.68750.06000.48750.0634*
H410.69120.19470.65080.0584*
H610.51790.36220.48390.0591*
H710.51710.23090.31940.0651*
H810.53980.41080.67380.0490*
H910.62490.27800.80110.0619*
H920.48130.26840.79060.0619*
H1310.87020.42920.69590.0480*
H1320.86310.50030.59990.0480*
H1511.17790.69080.76370.0769*
H1521.09700.54050.76480.0769*
H1531.12240.59120.65260.0769*
H1611.05990.81330.73170.0518*
H1621.02650.72930.61310.0518*
H2010.76830.84380.65170.0482*
H2211.12470.95260.62740.0572*
H2311.27781.16590.61680.0638*
H2610.98351.27900.65420.0717*
H2710.83171.06490.66590.0624*
H3310.64310.72150.85930.0669*
H3610.90450.98681.11050.1110*
H3711.01330.85471.11600.0974*
H3810.63430.49741.03880.0890*
H3820.65940.37461.00270.0890*
H3830.51340.35970.99770.0890*
H3011.00630.62041.03070.0710*
U11U22U33U12U13U23
Cl10.0825 (6)0.0603 (5)0.0685 (6)0.0259 (4)0.0069 (5)−0.0100 (4)
C20.0439 (16)0.0407 (15)0.0535 (19)0.0097 (13)0.0027 (14)0.0021 (13)
C30.0552 (19)0.0391 (15)0.067 (2)0.0250 (14)0.0025 (16)0.0058 (14)
C40.0498 (17)0.0480 (16)0.0542 (18)0.0276 (14)−0.0035 (14)0.0085 (14)
C50.0327 (14)0.0361 (13)0.0516 (17)0.0129 (11)−0.0049 (12)0.0032 (12)
C60.0486 (17)0.0442 (15)0.0554 (19)0.0226 (13)−0.0095 (14)0.0053 (14)
C70.0500 (18)0.0528 (17)0.056 (2)0.0208 (15)−0.0087 (14)0.0062 (15)
C80.0321 (14)0.0375 (13)0.0520 (17)0.0160 (11)−0.0036 (12)0.0044 (12)
C90.0406 (16)0.0400 (15)0.065 (2)0.0101 (13)0.0063 (14)0.0100 (14)
N100.0506 (14)0.0472 (13)0.0492 (15)0.0193 (11)0.0139 (11)0.0150 (11)
C110.0409 (15)0.0392 (13)0.0391 (16)0.0179 (12)0.0033 (12)0.0083 (11)
C120.0338 (14)0.0341 (12)0.0392 (15)0.0161 (11)−0.0021 (11)0.0067 (11)
C130.0385 (15)0.0359 (13)0.0483 (17)0.0200 (12)−0.0008 (12)0.0055 (12)
N140.0338 (12)0.0379 (11)0.0572 (15)0.0182 (10)0.0009 (10)0.0117 (10)
C150.0433 (17)0.0531 (18)0.105 (3)0.0271 (15)0.0038 (18)0.0238 (19)
C160.0409 (15)0.0358 (13)0.0547 (18)0.0187 (12)0.0050 (13)0.0090 (12)
C170.0420 (14)0.0401 (14)0.0332 (14)0.0227 (12)0.0008 (11)0.0072 (11)
C180.0391 (15)0.0421 (14)0.0345 (14)0.0222 (12)−0.0022 (11)0.0043 (11)
O190.0432 (12)0.0533 (12)0.0723 (15)0.0251 (10)−0.0040 (10)0.0206 (10)
C200.0426 (15)0.0426 (14)0.0399 (16)0.0227 (12)0.0008 (12)0.0091 (12)
C210.0491 (17)0.0409 (14)0.0338 (15)0.0222 (13)−0.0027 (12)0.0059 (11)
C220.0560 (18)0.0423 (15)0.0528 (18)0.0289 (14)0.0095 (14)0.0096 (13)
C230.0528 (18)0.0480 (16)0.064 (2)0.0260 (15)0.0117 (15)0.0129 (14)
C240.0551 (19)0.0389 (14)0.060 (2)0.0192 (13)0.0050 (15)0.0075 (13)
Cl250.0753 (6)0.0397 (4)0.1315 (9)0.0217 (4)0.0239 (6)0.0166 (5)
C260.066 (2)0.0391 (15)0.080 (2)0.0298 (15)0.0029 (17)0.0089 (15)
C270.0483 (17)0.0483 (16)0.066 (2)0.0277 (14)−0.0018 (14)0.0101 (14)
C280.0530 (18)0.0491 (16)0.0441 (17)0.0219 (14)0.0003 (13)0.0164 (14)
O290.0642 (14)0.0510 (12)0.0678 (14)0.0315 (11)−0.0091 (11)0.0171 (10)
N300.0666 (17)0.0545 (15)0.0520 (16)0.0234 (13)−0.0198 (13)0.0101 (13)
C310.074 (2)0.0489 (17)0.0404 (17)0.0196 (16)−0.0052 (15)0.0071 (14)
C320.0567 (17)0.0461 (15)0.0370 (16)0.0218 (14)0.0102 (13)0.0110 (13)
C330.074 (2)0.0544 (17)0.0493 (19)0.0361 (16)0.0206 (16)0.0134 (14)
C340.115 (3)0.059 (2)0.066 (2)0.050 (2)0.029 (2)0.0090 (19)
Cl350.1911 (15)0.0969 (8)0.1324 (11)0.1058 (10)0.0520 (10)0.0150 (8)
C360.153 (4)0.057 (2)0.054 (2)0.040 (3)0.007 (3)−0.0053 (18)
C370.119 (3)0.061 (2)0.043 (2)0.025 (2)−0.011 (2)−0.0012 (17)
C380.085 (3)0.074 (2)0.062 (2)0.030 (2)0.0281 (19)0.0254 (19)
Cl1—C21.743 (3)C16—H1620.960
C2—C31.375 (4)C17—C181.500 (4)
C2—C71.386 (4)C17—C201.345 (3)
C3—C41.382 (4)C18—O191.209 (3)
C3—H310.960C20—C211.467 (4)
C4—C51.394 (4)C20—H2010.960
C4—H410.960C21—C221.395 (4)
C5—C61.386 (4)C21—C271.389 (4)
C5—C81.517 (4)C22—C231.376 (4)
C6—C71.382 (4)C22—H2210.960
C6—H610.960C23—C241.375 (4)
C7—H710.960C23—H2310.960
C8—C91.514 (4)C24—Cl251.739 (3)
C8—C121.563 (3)C24—C261.381 (4)
C8—H810.960C26—C271.380 (4)
C9—N101.452 (4)C26—H2610.960
C9—H910.960C27—H2710.960
C9—H920.960C28—O291.230 (3)
N10—C111.474 (3)C28—N301.352 (4)
N10—C381.459 (4)N30—C311.397 (4)
C11—C121.588 (4)N30—H3010.960
C11—C281.556 (4)C31—C321.385 (4)
C11—C321.521 (4)C31—C371.378 (5)
C12—C131.532 (4)C32—C331.376 (4)
C12—C181.540 (3)C33—C341.393 (5)
C13—N141.450 (3)C33—H3310.960
C13—H1310.960C34—Cl351.741 (4)
C13—H1320.960C34—C361.376 (6)
N14—C151.464 (3)C36—C371.382 (6)
N14—C161.452 (3)C36—H3610.960
C15—H1510.960C37—H3710.960
C15—H1520.960C38—H3810.960
C15—H1530.960C38—H3820.960
C16—C171.505 (4)C38—H3830.960
C16—H1610.960
Cl1—C2—C3119.5 (2)C17—C16—H161108.5
Cl1—C2—C7119.7 (3)N14—C16—H162108.5
C3—C2—C7120.8 (3)C17—C16—H162108.5
C2—C3—C4119.5 (3)H161—C16—H162109.5
C2—C3—H31120.2C16—C17—C18119.6 (2)
C4—C3—H31120.2C16—C17—C20124.7 (2)
C3—C4—C5121.2 (3)C18—C17—C20115.6 (2)
C3—C4—H41119.4C12—C18—C17117.8 (2)
C5—C4—H41119.4C12—C18—O19120.7 (2)
C4—C5—C6117.8 (3)C17—C18—O19121.5 (2)
C4—C5—C8122.9 (3)C17—C20—C21131.5 (3)
C6—C5—C8119.3 (2)C17—C20—H201114.2
C5—C6—C7121.9 (3)C21—C20—H201114.3
C5—C6—H61119.0C20—C21—C22125.7 (2)
C7—C6—H61119.0C20—C21—C27117.8 (3)
C2—C7—C6118.7 (3)C22—C21—C27116.5 (2)
C2—C7—H71120.6C21—C22—C23122.1 (3)
C6—C7—H71120.7C21—C22—H221119.0
C5—C8—C9116.7 (2)C23—C22—H221119.0
C5—C8—C12115.4 (2)C22—C23—C24119.4 (3)
C9—C8—C12104.3 (2)C22—C23—H231120.3
C5—C8—H81106.6C24—C23—H231120.3
C9—C8—H81106.6C23—C24—Cl25119.3 (2)
C12—C8—H81106.6C23—C24—C26120.7 (3)
C8—C9—N10101.9 (2)Cl25—C24—C26120.1 (2)
C8—C9—H91111.3C24—C26—C27118.8 (3)
N10—C9—H91111.3C24—C26—H261120.6
C8—C9—H92111.3C27—C26—H261120.6
N10—C9—H92111.3C21—C27—C26122.5 (3)
H91—C9—H92109.5C21—C27—H271118.7
C9—N10—C11107.0 (2)C26—C27—H271118.7
C9—N10—C38114.9 (2)C11—C28—O29125.7 (3)
C11—N10—C38115.6 (3)C11—C28—N30108.9 (2)
N10—C11—C12103.0 (2)O29—C28—N30125.0 (3)
N10—C11—C28110.9 (2)C28—N30—C31111.0 (2)
C12—C11—C28113.1 (2)C28—N30—H301124.5
N10—C11—C32110.3 (2)C31—N30—H301124.5
C12—C11—C32119.1 (2)N30—C31—C32110.5 (3)
C28—C11—C32100.6 (2)N30—C31—C37128.0 (3)
C8—C12—C11103.6 (2)C32—C31—C37121.5 (3)
C8—C12—C13115.0 (2)C11—C32—C31108.8 (2)
C11—C12—C13111.2 (2)C11—C32—C33130.2 (3)
C8—C12—C18111.9 (2)C31—C32—C33120.7 (3)
C11—C12—C18108.90 (19)C32—C33—C34117.6 (3)
C13—C12—C18106.2 (2)C32—C33—H331121.2
C12—C13—N14107.5 (2)C34—C33—H331121.2
C12—C13—H131109.9C33—C34—Cl35118.5 (4)
N14—C13—H131109.9C33—C34—C36121.5 (3)
C12—C13—H132110.0Cl35—C34—C36120.0 (3)
N14—C13—H132110.0C34—C36—C37120.6 (3)
H131—C13—H132109.5C34—C36—H361119.7
C13—N14—C15113.2 (2)C37—C36—H361119.7
C13—N14—C16111.3 (2)C36—C37—C31118.1 (4)
C15—N14—C16110.6 (2)C36—C37—H371121.0
N14—C15—H151109.5C31—C37—H371121.0
N14—C15—H152109.5N10—C38—H381109.5
H151—C15—H152109.5N10—C38—H382109.5
N14—C15—H153109.4H381—C38—H382109.5
H151—C15—H153109.5N10—C38—H383109.4
H152—C15—H153109.5H381—C38—H383109.5
N14—C16—C17113.3 (2)H382—C38—H383109.5
N14—C16—H161108.5
Cl1—C2—C7—C6−179.9 (3)C11—C32—C33—C34175.1 (3)
C34—C36—C37—C31−0.1 (6)C20—C21—C27—C26179.6 (3)
C12—C13—N14—C15160.2 (2)O29—C28—N30—C31−175.9 (3)
C8—C12—C18—O1920.1 (3)N30—C31—C32—C111.4 (4)
N14—C16—C17—C18−16.4 (3)
D—H···AD—HH···AD···AD—H···A
C6—H61···O19i0.962.473.168 (5)130
N30—H301···O29ii0.961.902.844 (5)167
C38—H381···Cg0.952.632.818 (5)91 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C6—H61⋯O19i 0.962.473.168 (5)130
N30—H301⋯O29ii 0.961.902.844 (5)167

Symmetry codes: (i) ; (ii) .

  11 in total

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Authors:  Adel S Girgis; Jacek Stawinski; Nasser S M Ismail; Hanaa Farag
Journal:  Eur J Med Chem       Date:  2011-11-07       Impact factor: 6.514

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Authors:  Aneta Modzelewska; Catherine Pettit; Geetha Achanta; Nancy E Davidson; Peng Huang; Saeed R Khan
Journal:  Bioorg Med Chem       Date:  2006-01-24       Impact factor: 3.641

3.  Design, synthesis and QSAR studies of dispiroindole derivatives as new antiproliferative agents.

Authors:  Riham F George; Nasser S M Ismail; Jacek Stawinski; Adel S Girgis
Journal:  Eur J Med Chem       Date:  2013-08-11       Impact factor: 6.514

4.  Regioselective synthesis of dispiro[1H-indene-2,3'-pyrrolidine-2',3''-[3H]indole]-1,2''(1''H)-diones of potential anti-tumor properties.

Authors:  Adel S Girgis
Journal:  Eur J Med Chem       Date:  2008-03-28       Impact factor: 6.514

5.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

6.  What is the best crystal size for collection of X-ray data? Refinement of the structure of glycyl-L-serine based on data from a very large crystal.

Authors: 
Journal:  Acta Crystallogr B       Date:  1999-12-01

7.  5-Chloro-5''-[4-(di-methyl-amino)-benzyl-idene]-4'-[4-(di-methyl-amino)-phen-yl]-1',1''-di-methyl-dispiro-[indoline-3,2'-pyrrolidine-3',3''-piperidine]-2,4''-dione.

Authors:  I S Ahmed Farag; Adel S Girgis; A A Ramadan; A M Moustafa; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-12-18

8.  5''-Benzyl-idene-5-chloro-1',1''-dimethyl-4'-phenyl-dispiro-[indoline-3,2'-pyrrolidine-3',3''-piperidine]-2,4''-dione.

Authors:  I S Ahmed Farag; Adel S Girgis; A A Ramadan; A M Moustafa; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-12-07

9.  5-Chloro-5''-(4-chloro-benzyl-idene)-4'-(4-chloro-phen-yl)-1''-ethyl-1'-methyl-dispiro-[indoline-3,2'-pyrrolidine-3',3''-piperidine]-2,4''-dione.

Authors:  I S Ahmed Farag; Adel S Girgis; A A Ramadan; A M Moustafa; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-12-14

10.  1'-Methyl-4'-(4-methyl-phen-yl)dispiro-[indane-2,3'-pyrrolidine-2',3''-indoline]-1,2''-dione.

Authors:  A M Moustafa; Adel S Girgis; S M Shalaby; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-23
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  1 in total

1.  Synthesis and molecular modeling studies of cholinesterase inhibitor dispiro[indoline-3,2'-pyrrolidine-3',3''-pyrrolidines].

Authors:  M Adel Youssef; Siva S Panda; Riham A El-Shiekh; ElSayed M Shalaby; Dalia R Aboshouk; Walid Fayad; Nehmedo G Fawzy; Adel S Girgis
Journal:  RSC Adv       Date:  2020-06-08       Impact factor: 4.036

  1 in total

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