Literature DB >> 24855471

5-Chloro-5''-[4-(di-methyl-amino)-benzyl-idene]-4'-[4-(di-methyl-amino)-phen-yl]-1',1''-di-methyl-dispiro-[indoline-3,2'-pyrrolidine-3',3''-piperidine]-2,4''-dione.

I S Ahmed Farag1, Adel S Girgis2, A A Ramadan3, A M Moustafa1, Edward R T Tiekink4.   

Abstract

The title compound, C34H38ClN5O2, has spiro links connecting the pyrrolidine ring and indole residue, as well as the piperidine and pyrrolidine rings. A half-chair conformation is found for the piperidine ring with the C atom connected to the spiro-C atom lying 0.738 (4) Å out of the plane of the remaining five atoms (r.m.s. deviation = 0.0407 Å). The methyl-ene C atom is the flap in the envelope conformation for the pyrrolidine ring. In the crystal, supra-molecular chains are sustained by alternating eight-membered {⋯HNCO}2 and 14-membered {⋯HC5O}2 synthons. Chains are connected into a three-dimensional network by (pyrrolidine-bound phenyl-meth-yl)C-H⋯π(pyrrolidine-bound phen-yl) edge-to-face inter-actions.

Entities:  

Year:  2013        PMID: 24855471      PMCID: PMC4029217          DOI: 10.1107/S1600536813033771

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of related spiro pyrrolidine analogues, see: Girgis et al. (2012 ▶); Kumar et al. (2008 ▶). For related structural studies, see: Ahmed Farag et al. (2013a ▶,b ▶). For the synthesis of the precursor mol­ecule, see: Al-Omary et al. (2012 ▶).

Experimental

Crystal data

C34H38ClN5O2 M = 584.14 Triclinic, a = 11.5458 (5) Å b = 12.2357 (5) Å c = 12.5267 (7) Å α = 64.341 (2)° β = 84.286 (2)° γ = 83.467 (2)° V = 1582.29 (13) Å3 Z = 2 Mo Kα radiation μ = 0.16 mm−1 T = 293 K 0.31 × 0.18 × 0.13 mm

Data collection

Enraf–Nonius 590 KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.782, T max = 0.927 13814 measured reflections 7127 independent reflections 2244 reflections with I > 2σ(I) R int = 0.081

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.165 S = 0.91 7127 reflections 385 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.20 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶), DIAMOND (Brandenburg, 2006 ▶) and Qmol (Gans & Shalloway, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) general, I. DOI: 10.1107/S1600536813033771/hg5368sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813033771/hg5368Isup2.hkl Additional supporting information: crystallographic information; 3D view; checkCIF report
C34H38ClN5O2Z = 2
Mr = 584.14F(000) = 620
Triclinic, P1Dx = 1.226 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 11.5458 (5) ÅCell parameters from 5831 reflections
b = 12.2357 (5) Åθ = 2.9–27.5°
c = 12.5267 (7) ŵ = 0.16 mm1
α = 64.341 (2)°T = 293 K
β = 84.286 (2)°Block, orange
γ = 83.467 (2)°0.31 × 0.18 × 0.13 mm
V = 1582.29 (13) Å3
Enraf–Nonius 590 KappaCCD diffractometer7127 independent reflections
Radiation source: fine-focus sealed tube2244 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.081
φ and ω scansθmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −14→14
Tmin = 0.782, Tmax = 0.927k = −15→15
13814 measured reflectionsl = −16→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.165H-atom parameters constrained
S = 0.91w = 1/[σ2(Fo2) + (0.055P)2] where P = (Fo2 + 2Fc2)/3
7127 reflections(Δ/σ)max < 0.001
385 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.00842 (11)0.90513 (9)0.33316 (9)0.1119 (5)
O10.3446 (2)0.59561 (19)0.5160 (2)0.0750 (8)
O20.1064 (2)0.4073 (2)0.9448 (2)0.0704 (7)
N10.2654 (2)0.6453 (2)0.8157 (2)0.0469 (7)
N20.1139 (3)0.4251 (3)0.6910 (2)0.0662 (9)
N30.3573 (3)1.3398 (2)0.3237 (2)0.0652 (8)
N40.0072 (3)0.5930 (3)0.8421 (3)0.0668 (9)
H4n−0.03480.59790.90080.080*
N50.6847 (3)0.0837 (3)1.0145 (3)0.0800 (10)
C10.2785 (3)0.5106 (3)0.7211 (3)0.0504 (9)
C20.3223 (3)0.5320 (3)0.8207 (2)0.0482 (9)
H2A0.30380.46580.89680.058*
H2B0.40630.53620.81080.058*
C30.3109 (3)0.7505 (3)0.7153 (2)0.0494 (9)
H3A0.38520.76530.73460.059*
H3B0.25750.82150.70320.059*
C40.3277 (3)0.7353 (3)0.6021 (3)0.0452 (8)
C50.3213 (3)0.6136 (3)0.6040 (3)0.0507 (9)
C60.1383 (3)0.5203 (3)0.7259 (3)0.0560 (10)
C70.1985 (3)0.3228 (3)0.7457 (3)0.0749 (12)
H7A0.20220.26690.70900.090*
H7B0.17940.27920.83000.090*
C80.3149 (3)0.3828 (3)0.7230 (3)0.0613 (10)
H80.34350.39730.64200.074*
C90.2653 (3)0.6588 (3)0.9254 (3)0.0725 (11)
H9A0.22720.59340.98840.109*
H9B0.22440.73500.91600.109*
H9C0.34430.65700.94430.109*
C10−0.0077 (4)0.3941 (3)0.7112 (4)0.1041 (15)
H10A−0.01660.33650.68000.156*
H10B−0.05790.46630.67210.156*
H10C−0.02830.35900.79480.156*
C110.3454 (2)0.8291 (3)0.4941 (3)0.0490 (9)
H110.35550.80610.43180.059*
C120.3515 (3)0.9578 (3)0.4575 (3)0.0474 (9)
C130.3543 (3)1.0342 (3)0.3361 (3)0.0551 (9)
H130.35400.99970.28300.066*
C140.3575 (3)1.1582 (3)0.2919 (3)0.0561 (10)
H140.35961.20470.21020.067*
C150.3576 (3)1.2159 (3)0.3670 (3)0.0500 (9)
C160.3594 (3)1.1397 (3)0.4884 (3)0.0530 (9)
H160.36231.17370.54150.064*
C170.3571 (3)1.0161 (3)0.5311 (3)0.0543 (10)
H170.35930.96900.61250.065*
C180.3406 (3)1.3962 (3)0.4056 (3)0.0846 (13)
H18A0.26611.37860.44800.127*
H18B0.34351.48260.36210.127*
H18C0.40131.36460.46070.127*
C190.3349 (3)1.4166 (3)0.2012 (3)0.0779 (12)
H19A0.39281.39610.15090.117*
H19B0.33821.50020.18590.117*
H19C0.25881.40470.18520.117*
C200.0856 (3)0.4990 (4)0.8513 (3)0.0599 (10)
C210.0032 (3)0.6814 (3)0.7249 (3)0.0568 (10)
C22−0.0627 (3)0.7898 (4)0.6808 (4)0.0724 (11)
H22−0.10860.81630.73160.087*
C23−0.0601 (3)0.8595 (4)0.5598 (4)0.0775 (12)
H23−0.10350.93420.52830.093*
C240.0067 (4)0.8180 (3)0.4863 (3)0.0696 (11)
C250.0755 (3)0.7089 (3)0.5291 (3)0.0667 (11)
H250.12040.68210.47800.080*
C260.0748 (3)0.6413 (3)0.6511 (3)0.0545 (9)
C270.4107 (4)0.3056 (3)0.8031 (3)0.0573 (10)
C280.5228 (4)0.2936 (3)0.7547 (3)0.0693 (11)
H280.53770.33690.67350.083*
C290.6123 (4)0.2206 (3)0.8222 (4)0.0689 (11)
H290.68510.21460.78520.083*
C300.5965 (4)0.1550 (3)0.9452 (4)0.0645 (11)
C310.4844 (4)0.1671 (3)0.9943 (3)0.0681 (11)
H310.46940.12451.07560.082*
C320.3959 (3)0.2404 (3)0.9255 (3)0.0669 (11)
H320.32310.24670.96230.080*
C330.6631 (4)0.0129 (3)1.1413 (4)0.0925 (13)
H33A0.62490.06491.17570.139*
H33B0.7360−0.02231.17730.139*
H33C0.6142−0.05061.15450.139*
C340.7943 (4)0.0575 (4)0.9629 (4)0.1278 (18)
H34A0.78170.01800.91390.192*
H34B0.84440.00491.02470.192*
H34C0.83010.13180.91550.192*
U11U22U33U12U13U23
Cl10.1734 (13)0.0715 (7)0.0785 (8)−0.0019 (7)−0.0476 (8)−0.0139 (6)
O10.128 (2)0.0533 (14)0.0436 (15)−0.0158 (14)0.0206 (15)−0.0242 (12)
O20.0789 (19)0.0616 (16)0.0541 (16)−0.0088 (14)0.0129 (14)−0.0119 (13)
N10.067 (2)0.0403 (16)0.0340 (16)−0.0073 (14)0.0040 (14)−0.0171 (13)
N20.084 (2)0.0508 (19)0.070 (2)−0.0043 (19)−0.0158 (18)−0.0298 (16)
N30.098 (2)0.0430 (18)0.0476 (19)−0.0053 (16)−0.0090 (17)−0.0116 (16)
N40.065 (2)0.065 (2)0.063 (2)−0.0093 (18)0.0162 (17)−0.0227 (18)
N50.086 (3)0.078 (2)0.075 (3)0.005 (2)−0.002 (2)−0.035 (2)
C10.070 (3)0.041 (2)0.039 (2)−0.0017 (18)0.0080 (19)−0.0191 (16)
C20.062 (2)0.041 (2)0.038 (2)−0.0047 (17)0.0013 (17)−0.0141 (16)
C30.061 (2)0.0426 (19)0.041 (2)−0.0002 (17)−0.0038 (17)−0.0146 (16)
C40.054 (2)0.045 (2)0.039 (2)−0.0054 (17)0.0056 (17)−0.0213 (17)
C50.064 (2)0.046 (2)0.040 (2)−0.0014 (18)0.0042 (19)−0.0183 (18)
C60.071 (3)0.050 (2)0.052 (2)−0.010 (2)0.000 (2)−0.0258 (19)
C70.108 (3)0.054 (2)0.071 (3)−0.011 (3)−0.009 (2)−0.032 (2)
C80.089 (3)0.051 (2)0.045 (2)0.001 (2)0.006 (2)−0.0245 (18)
C90.118 (3)0.058 (2)0.042 (2)−0.017 (2)0.008 (2)−0.0220 (19)
C100.102 (4)0.086 (3)0.140 (4)−0.029 (3)−0.031 (3)−0.053 (3)
C110.055 (2)0.049 (2)0.041 (2)−0.0022 (18)0.0066 (17)−0.0208 (17)
C120.053 (2)0.045 (2)0.041 (2)−0.0061 (17)0.0014 (17)−0.0155 (18)
C130.071 (3)0.054 (2)0.042 (2)−0.0079 (19)0.0039 (18)−0.0218 (18)
C140.068 (3)0.055 (2)0.035 (2)−0.0096 (19)0.0049 (18)−0.0099 (18)
C150.056 (2)0.046 (2)0.045 (2)−0.0046 (18)−0.0027 (18)−0.0161 (19)
C160.067 (3)0.048 (2)0.042 (2)−0.0052 (19)−0.0084 (18)−0.0173 (18)
C170.066 (3)0.049 (2)0.042 (2)−0.0083 (19)−0.0037 (18)−0.0116 (18)
C180.123 (4)0.053 (2)0.076 (3)−0.010 (2)0.002 (3)−0.027 (2)
C190.100 (3)0.045 (2)0.069 (3)−0.010 (2)−0.015 (2)−0.003 (2)
C200.063 (3)0.058 (3)0.059 (3)−0.015 (2)0.006 (2)−0.025 (2)
C210.052 (3)0.053 (2)0.065 (3)−0.007 (2)−0.002 (2)−0.023 (2)
C220.060 (3)0.070 (3)0.088 (3)0.000 (2)0.000 (2)−0.037 (3)
C230.070 (3)0.065 (3)0.097 (4)0.001 (2)−0.024 (3)−0.031 (3)
C240.087 (3)0.050 (3)0.068 (3)−0.009 (2)−0.022 (3)−0.017 (2)
C250.085 (3)0.060 (3)0.060 (3)−0.010 (2)−0.015 (2)−0.026 (2)
C260.063 (3)0.047 (2)0.055 (3)−0.0063 (19)−0.006 (2)−0.021 (2)
C270.083 (3)0.041 (2)0.041 (2)0.005 (2)0.007 (2)−0.0154 (18)
C280.096 (3)0.051 (2)0.052 (3)−0.011 (2)0.020 (3)−0.017 (2)
C290.075 (3)0.066 (3)0.064 (3)−0.005 (2)0.014 (2)−0.030 (2)
C300.081 (3)0.047 (2)0.066 (3)0.006 (2)−0.007 (3)−0.026 (2)
C310.094 (3)0.052 (2)0.048 (3)0.010 (2)0.004 (3)−0.017 (2)
C320.087 (3)0.058 (2)0.047 (3)0.002 (2)0.019 (2)−0.021 (2)
C330.122 (4)0.071 (3)0.085 (3)0.016 (3)−0.029 (3)−0.035 (3)
C340.095 (4)0.143 (5)0.135 (5)0.033 (3)−0.008 (4)−0.060 (4)
Cl1—C241.744 (4)C11—H110.9300
O1—C51.214 (3)C12—C131.398 (4)
O2—C201.244 (4)C12—C171.397 (4)
N1—C21.444 (4)C13—C141.375 (4)
N1—C91.453 (4)C13—H130.9300
N1—C31.461 (3)C14—C151.400 (4)
N2—C71.450 (4)C14—H140.9300
N2—C101.465 (4)C15—C161.399 (4)
N2—C61.472 (4)C16—C171.371 (4)
N3—C151.370 (4)C16—H160.9300
N3—C191.442 (4)C17—H170.9300
N3—C181.452 (4)C18—H18A0.9600
N4—C201.350 (4)C18—H18B0.9600
N4—C211.398 (4)C18—H18C0.9600
N4—H4n0.8600C19—H19A0.9600
N5—C301.368 (4)C19—H19B0.9600
N5—C341.430 (5)C19—H19C0.9600
N5—C331.453 (4)C21—C221.365 (5)
C1—C21.523 (4)C21—C261.388 (4)
C1—C51.542 (4)C22—C231.379 (5)
C1—C81.563 (4)C22—H220.9300
C1—C61.606 (4)C23—C241.369 (5)
C2—H2A0.9700C23—H230.9300
C2—H2B0.9700C24—C251.387 (5)
C3—C41.499 (4)C25—C261.387 (4)
C3—H3A0.9700C25—H250.9300
C3—H3B0.9700C27—C321.392 (4)
C4—C111.358 (4)C27—C281.393 (4)
C4—C51.490 (4)C28—C291.375 (5)
C6—C261.515 (4)C28—H280.9300
C6—C201.549 (4)C29—C301.399 (5)
C7—C81.547 (4)C29—H290.9300
C7—H7A0.9700C30—C311.397 (5)
C7—H7B0.9700C31—C321.375 (4)
C8—C271.512 (4)C31—H310.9300
C8—H80.9800C32—H320.9300
C9—H9A0.9600C33—H33A0.9600
C9—H9B0.9600C33—H33B0.9600
C9—H9C0.9600C33—H33C0.9600
C10—H10A0.9600C34—H34A0.9600
C10—H10B0.9600C34—H34B0.9600
C10—H10C0.9600C34—H34C0.9600
C11—C121.446 (4)
C2—N1—C9114.3 (3)C12—C13—H13118.6
C2—N1—C3112.1 (2)C13—C14—C15121.5 (3)
C9—N1—C3110.9 (2)C13—C14—H14119.2
C7—N2—C10114.6 (3)C15—C14—H14119.2
C7—N2—C6107.0 (3)N3—C15—C16122.1 (3)
C10—N2—C6115.4 (3)N3—C15—C14121.8 (3)
C15—N3—C19120.4 (3)C16—C15—C14116.1 (3)
C15—N3—C18119.4 (3)C17—C16—C15121.7 (3)
C19—N3—C18117.1 (3)C17—C16—H16119.2
C20—N4—C21111.3 (3)C15—C16—H16119.2
C20—N4—H4n124.4C16—C17—C12122.8 (3)
C21—N4—H4n124.4C16—C17—H17118.6
C30—N5—C34121.1 (4)C12—C17—H17118.6
C30—N5—C33120.8 (4)N3—C18—H18A109.5
C34—N5—C33116.9 (4)N3—C18—H18B109.5
C2—C1—C5106.3 (2)H18A—C18—H18B109.5
C2—C1—C8115.7 (3)N3—C18—H18C109.5
C5—C1—C8111.4 (3)H18A—C18—H18C109.5
C2—C1—C6111.1 (3)H18B—C18—H18C109.5
C5—C1—C6108.0 (3)N3—C19—H19A109.5
C8—C1—C6104.1 (2)N3—C19—H19B109.5
N1—C2—C1107.8 (3)H19A—C19—H19B109.5
N1—C2—H2A110.2N3—C19—H19C109.5
C1—C2—H2A110.2H19A—C19—H19C109.5
N1—C2—H2B110.2H19B—C19—H19C109.5
C1—C2—H2B110.2O2—C20—N4125.1 (3)
H2A—C2—H2B108.5O2—C20—C6125.9 (4)
N1—C3—C4113.6 (2)N4—C20—C6108.9 (3)
N1—C3—H3A108.9C22—C21—C26121.5 (4)
C4—C3—H3A108.9C22—C21—N4128.7 (4)
N1—C3—H3B108.9C26—C21—N4109.7 (3)
C4—C3—H3B108.9C21—C22—C23119.1 (4)
H3A—C3—H3B107.7C21—C22—H22120.4
C11—C4—C5116.6 (3)C23—C22—H22120.4
C11—C4—C3123.2 (3)C24—C23—C22119.6 (4)
C5—C4—C3120.1 (2)C24—C23—H23120.2
O1—C5—C4121.9 (3)C22—C23—H23120.2
O1—C5—C1120.2 (3)C23—C24—C25122.3 (4)
C4—C5—C1117.8 (3)C23—C24—Cl1119.6 (4)
N2—C6—C26111.2 (3)C25—C24—Cl1118.1 (4)
N2—C6—C20112.8 (3)C26—C25—C24117.6 (4)
C26—C6—C20100.7 (3)C26—C25—H25121.2
N2—C6—C1102.7 (3)C24—C25—H25121.2
C26—C6—C1118.5 (3)C25—C26—C21119.8 (4)
C20—C6—C1111.4 (3)C25—C26—C6131.0 (4)
N2—C7—C8103.5 (3)C21—C26—C6109.1 (3)
N2—C7—H7A111.1C32—C27—C28115.3 (4)
C8—C7—H7A111.1C32—C27—C8124.8 (4)
N2—C7—H7B111.1C28—C27—C8120.0 (3)
C8—C7—H7B111.1C29—C28—C27122.7 (3)
H7A—C7—H7B109.0C29—C28—H28118.6
C27—C8—C7115.2 (3)C27—C28—H28118.6
C27—C8—C1117.2 (3)C28—C29—C30121.6 (4)
C7—C8—C1104.4 (3)C28—C29—H29119.2
C27—C8—H8106.4C30—C29—H29119.2
C7—C8—H8106.4N5—C30—C31121.3 (4)
C1—C8—H8106.4N5—C30—C29122.7 (4)
N1—C9—H9A109.5C31—C30—C29116.0 (4)
N1—C9—H9B109.5C32—C31—C30121.6 (4)
H9A—C9—H9B109.5C32—C31—H31119.2
N1—C9—H9C109.5C30—C31—H31119.2
H9A—C9—H9C109.5C31—C32—C27122.8 (4)
H9B—C9—H9C109.5C31—C32—H32118.6
N2—C10—H10A109.5C27—C32—H32118.6
N2—C10—H10B109.5N5—C33—H33A109.5
H10A—C10—H10B109.5N5—C33—H33B109.5
N2—C10—H10C109.5H33A—C33—H33B109.5
H10A—C10—H10C109.5N5—C33—H33C109.5
H10B—C10—H10C109.5H33A—C33—H33C109.5
C4—C11—C12132.2 (3)H33B—C33—H33C109.5
C4—C11—H11113.9N5—C34—H34A109.5
C12—C11—H11113.9N5—C34—H34B109.5
C13—C12—C17115.1 (3)H34A—C34—H34B109.5
C13—C12—C11118.0 (3)N5—C34—H34C109.5
C17—C12—C11126.9 (3)H34A—C34—H34C109.5
C14—C13—C12122.7 (3)H34B—C34—H34C109.5
C14—C13—H13118.6
D—H···AD—HH···AD···AD—H···A
N4—H4n···O2i0.862.002.853 (4)169
C28—H28···O1ii0.932.473.337 (4)156
C33—H33c···Cg1iii0.962.883.807 (5)163
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C27–C32 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N4—H4n⋯O2i 0.862.002.853 (4)169
C28—H28⋯O1ii 0.932.473.337 (4)156
C33—H33c⋯Cg1iii 0.962.883.807 (5)163

Symmetry codes: (i) ; (ii) ; (iii) .

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