Literature DB >> 10927450

What is the best crystal size for collection of X-ray data? Refinement of the structure of glycyl-L-serine based on data from a very large crystal.

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Abstract

The dipeptide Gly-L-Ser was crystallized as part of a study on hydrogen-bonding patterns in the structures of dipeptides. Hydrogen-bond donors and acceptors have been assigned ranks (1 is best, 2 is next best etc.), and the observed hydrogen-bond connectivity is compared with the hypothetical pattern in which the rank n donor associates with the rank n acceptor (n = 1, 2,.), and with the pattern observed in the retroanalogue L-Ser-Gly, which contains the same functional groups. Crystallization of the title compound produced very bulky crystals. Rather than reducing the size of one of these before data collection, three data sets with different exposure times were collected with a Siemens SMART CCD diffractometer on a very large specimen (2.2 x 2.0 x 0.8 mm). The crystal was subsequently shaped into a 0.30 mm-diameter sphere for collection of two additional data sets. The discussion of the refinement results focus on the effect of absorption correction for the various data sets, and a comparison of geometrical and thermal parameters. One advantage of using a large crystal, the great speed with which data can be obtained, has been exemplified by collection of a complete data set of good quality in less than 25 min.

Entities:  

Year:  1999        PMID: 10927450     DOI: 10.1107/s0108768199008721

Source DB:  PubMed          Journal:  Acta Crystallogr B        ISSN: 0108-7681


  26 in total

1.  (1RS,4SR)-3-Dichloro-methyl-ene-1,4-dimethyl-2-oxabicyclo-[2.2.2]oct-5-ene.

Authors:  Andrew J Tyrrell; George C Feast; Jeremy Robertson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-13

2.  tert-Butyl-dimethyl-silanol hemihydrate.

Authors:  Sarah M Barry; Helge Mueller-Bunz; Peter J Rutledge
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-30

3.  1-De-oxy-d-galactitol (l-fucitol).

Authors:  Sarah F Jenkinson; K Victoria Booth; Akihide Yoshihara; Kenji Morimoto; George W J Fleet; Ken Izumori; David J Watkin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-09

4.  α-d-Tagatopyran-ose.

Authors:  Francesco Punzo; David J Watkin; George W J Fleet
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-23

5.  7-Azido-N,N-diethyl-4,5-O-isopropyl-idene-4-C-methyl-3,6-anhydro-7-de-oxy-d-glycero-d-manno-heptonamide.

Authors:  Sarah F Jenkinson; Chen Wang; Maria-Soledad Pino-González; George W J Fleet; David J Watkin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-08

6.  2-Acetamido-N-benzyl-1,4-imino-1,2,4-tride-oxy-l-xylitol (N-benzyl-l-XYLNAc).

Authors:  Sarah F Jenkinson; Elizabeth V Crabtree; Andreas F G Glawar; Terry D Butters; George W J Fleet; David J Watkin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-24

7.  (4S,5R,6R)-Methyl 4-hydr-oxy-4,5-iso-propyl-idenedioxy-4,5,6,7-tetra-hydro-1,2,3-triazolo[1,5-a]pyridine-3-carboxyl-ate.

Authors:  Sarah F Jenkinson; Jennifer R Fenton; K Victoria Booth; George W J Fleet; David J Watkin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25

8.  3,5,7-Tripropyl-1-aza-adamantane-4,6,10-triol.

Authors:  Pierre-Loïc Saaidi; Pierre-Etienne Chazal; Philippe Maurin; Erwann Jeanneau; Jens Hasserodt
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-04

9.  4-Chloro-3-fluoro-2-methyl-aniline-pyrrolidine-2,5-dione (1/1).

Authors:  Benjamin A Mayes; Patrick McGarry; Adel Moussa; David J Watkin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-28

10.  2-O-Benzhydryl-3,4-(S)-O-benzyl-idene-d-xylono-1,4-lactone.

Authors:  Sarah F Jenkinson; Sebastian D Rule; Kathrine V Booth; George W J Fleet; David J Watkin; Sigthor Petursson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-07
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