| Literature DB >> 24765054 |
Venumadhav Janganati1, Narsimha Reddy Penthala1, Nikhil Reddy Madadi1, Sean Parkin2, Peter A Crooks1.
Abstract
THE TITLE MONOSUCCINATE DERIVATIVE OF MELAMPOMAGNOLIDE B [SYSTEMATIC NAME: 4-(((1aR,7aS,10aS,10bS,E)-1a-methyl-8-meth-yl-ene-9-oxo-1a,2,3,6,7,7a,8,9,10a,10b-deca-hydro-oxireno[2',3':9,10]cyclo-deca-[1,2-b]furan-5-yl)meth-oxy)-4-oxo-butan-oic acid], C19H24O7, was obtained from the reaction of melampomagnolide B with succinic anhydride under nucleophilic addition reaction conditions. The mol-ecule is built up from fused ten-, five- (lactone) and three-membered (epoxide) rings. The inter-nal double bond in the ten-membered ring has the cis geometry (i.e. it is the E isomer). The lactone ring has an envelope-type conformation, with the (chiral) C atom opposite the lactone O atoms as the flap atom. In the crystal, O-H⋯O hydrogen bonds link the mol-ecules into chains parallel to the b-axis direction.Entities:
Year: 2014 PMID: 24765054 PMCID: PMC3998419 DOI: 10.1107/S1600536814002815
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C19H24O7 | |
| Cu | |
| Orthorhombic, | Cell parameters from 9822 reflections |
| θ = 5.5–68.3° | |
| µ = 0.87 mm−1 | |
| Wedge, colourless | |
| 0.21 × 0.20 × 0.18 mm | |
| Bruker X8 Proteum diffractometer | 3218 independent reflections |
| Radiation source: fine-focus rotating anode | 3204 reflections with |
| Detector resolution: 5.6 pixels mm-1 | |
| φ and ω scans | θmax = 68.2°, θmin = 5.5° |
| Absorption correction: multi-scan ( | |
| 21766 measured reflections |
| Refinement on | Hydrogen site location: mixed |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.16 e Å−3 | |
| 3218 reflections | Δρmin = −0.15 e Å−3 |
| 240 parameters | Extinction correction: |
| 0 restraints | Extinction coefficient: 0.0033 (6) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack parameter determined using 1346 quotients
[( |
| Secondary atom site location: difference Fourier map | Absolute structure parameter: −0.02 (3) |
| Experimental. The crystal was mounted with polyisobutene oil on the tip of a fine glass fibre, fastened in a copper mounting pin with electrical solder. It was placed directly into the cold stream of a liquid nitrogen based cryostat, according to published methods (Hope, 1994; Parkin & Hope, 1998). Diffraction data were collected with the crystal at 90K, which is standard practice in this laboratory for the majority of flash-cooled crystals. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement progress was checked using routines in Platon (Spek, 2009), by the R-tensor (Parkin, 2000), and with the IUCr utility checkCIF. |
| O1 | 0.20411 (13) | 0.31754 (11) | 0.44993 (5) | 0.0191 (3) | |
| O2 | 0.23859 (13) | 0.11877 (11) | 0.55661 (5) | 0.0204 (3) | |
| O3 | 0.26866 (16) | −0.07622 (12) | 0.61342 (6) | 0.0307 (3) | |
| O4 | 0.73762 (12) | 0.64045 (12) | 0.64763 (5) | 0.0201 (3) | |
| O5 | 0.95459 (14) | 0.52306 (14) | 0.66681 (7) | 0.0309 (3) | |
| O6 | 0.98811 (14) | 0.66939 (14) | 0.83142 (6) | 0.0290 (3) | |
| O7 | 1.23791 (13) | 0.70884 (13) | 0.82130 (6) | 0.0229 (3) | |
| H7 | 1.238 (3) | 0.690 (2) | 0.8623 (12) | 0.034* | |
| C1 | 0.5239 (2) | 0.60864 (17) | 0.52307 (8) | 0.0214 (4) | |
| H1A | 0.6171 | 0.6045 | 0.5002 | 0.026* | |
| C2 | 0.3899 (2) | 0.66538 (17) | 0.48663 (8) | 0.0248 (4) | |
| H2A | 0.4240 | 0.7463 | 0.4612 | 0.030* | |
| H2B | 0.3127 | 0.6990 | 0.5173 | 0.030* | |
| C3 | 0.3147 (2) | 0.55854 (17) | 0.44177 (8) | 0.0223 (3) | |
| H3A | 0.2483 | 0.6076 | 0.4110 | 0.027* | |
| H3B | 0.3944 | 0.5087 | 0.4175 | 0.027* | |
| C4 | 0.22202 (19) | 0.45571 (16) | 0.47891 (7) | 0.0184 (3) | |
| C5 | 0.30221 (18) | 0.33451 (16) | 0.50515 (7) | 0.0162 (3) | |
| H5A | 0.4138 | 0.3313 | 0.4958 | 0.019* | |
| C6 | 0.25592 (17) | 0.26798 (16) | 0.56681 (7) | 0.0167 (3) | |
| H6A | 0.1580 | 0.3090 | 0.5822 | 0.020* | |
| C7 | 0.38020 (17) | 0.28350 (17) | 0.61809 (7) | 0.0184 (3) | |
| H7A | 0.4809 | 0.2858 | 0.5960 | 0.022* | |
| C8 | 0.3701 (2) | 0.41277 (18) | 0.66040 (8) | 0.0227 (4) | |
| H8A | 0.4472 | 0.4042 | 0.6945 | 0.027* | |
| H8B | 0.2688 | 0.4134 | 0.6811 | 0.027* | |
| C9 | 0.39325 (18) | 0.55441 (17) | 0.62692 (7) | 0.0199 (3) | |
| H9A | 0.3006 | 0.5757 | 0.6019 | 0.024* | |
| H9B | 0.4034 | 0.6273 | 0.6600 | 0.024* | |
| C10 | 0.52939 (18) | 0.56347 (16) | 0.58308 (8) | 0.0190 (3) | |
| C11 | 0.36737 (18) | 0.14530 (18) | 0.65197 (8) | 0.0217 (4) | |
| C12 | 0.28777 (19) | 0.04748 (17) | 0.60846 (8) | 0.0220 (4) | |
| C13 | 0.4154 (2) | 0.1067 (2) | 0.70887 (9) | 0.0300 (4) | |
| H13A | 0.3994 | 0.0140 | 0.7231 | 0.036* | |
| H13B | 0.4660 | 0.1717 | 0.7356 | 0.036* | |
| C14 | 0.68183 (18) | 0.52273 (17) | 0.60986 (8) | 0.0223 (4) | |
| H14A | 0.6716 | 0.4390 | 0.6370 | 0.027* | |
| H14B | 0.7539 | 0.5015 | 0.5750 | 0.027* | |
| C15 | 0.07576 (19) | 0.50907 (18) | 0.50694 (8) | 0.0231 (4) | |
| H15A | 0.0156 | 0.4307 | 0.5230 | 0.035* | |
| H15B | 0.0178 | 0.5584 | 0.4741 | 0.035* | |
| H15C | 0.0986 | 0.5729 | 0.5420 | 0.035* | |
| C16 | 0.87876 (18) | 0.62669 (18) | 0.67217 (7) | 0.0197 (3) | |
| C17 | 0.9271 (2) | 0.75939 (19) | 0.70422 (8) | 0.0267 (4) | |
| H17A | 0.8544 | 0.7803 | 0.7389 | 0.032* | |
| H17B | 0.9210 | 0.8362 | 0.6729 | 0.032* | |
| C18 | 1.0873 (2) | 0.7560 (2) | 0.73186 (8) | 0.0249 (4) | |
| H18A | 1.1513 | 0.6947 | 0.7051 | 0.030* | |
| H18B | 1.1309 | 0.8509 | 0.7297 | 0.030* | |
| C19 | 1.09495 (19) | 0.70589 (17) | 0.79952 (8) | 0.0189 (3) |
| O1 | 0.0226 (6) | 0.0180 (5) | 0.0165 (5) | −0.0031 (4) | −0.0027 (4) | −0.0021 (4) |
| O2 | 0.0256 (6) | 0.0170 (5) | 0.0188 (5) | −0.0029 (5) | −0.0005 (5) | 0.0013 (4) |
| O3 | 0.0416 (7) | 0.0206 (6) | 0.0299 (6) | −0.0002 (5) | 0.0045 (6) | 0.0061 (5) |
| O4 | 0.0175 (6) | 0.0213 (6) | 0.0215 (5) | 0.0006 (4) | −0.0039 (4) | −0.0023 (4) |
| O5 | 0.0225 (6) | 0.0267 (7) | 0.0436 (7) | 0.0041 (5) | −0.0058 (6) | −0.0024 (6) |
| O6 | 0.0205 (6) | 0.0381 (8) | 0.0284 (6) | −0.0032 (5) | 0.0045 (5) | 0.0074 (6) |
| O7 | 0.0177 (6) | 0.0311 (6) | 0.0200 (6) | −0.0015 (5) | −0.0027 (4) | 0.0018 (5) |
| C1 | 0.0225 (8) | 0.0161 (7) | 0.0256 (9) | −0.0040 (7) | 0.0014 (7) | −0.0039 (6) |
| C2 | 0.0335 (9) | 0.0170 (8) | 0.0239 (8) | −0.0047 (7) | −0.0040 (7) | 0.0013 (7) |
| C3 | 0.0296 (9) | 0.0193 (8) | 0.0182 (7) | −0.0033 (7) | −0.0028 (7) | 0.0012 (6) |
| C4 | 0.0214 (8) | 0.0178 (8) | 0.0160 (7) | −0.0010 (7) | −0.0036 (6) | −0.0025 (6) |
| C5 | 0.0160 (7) | 0.0170 (7) | 0.0156 (7) | −0.0016 (6) | −0.0004 (6) | −0.0025 (6) |
| C6 | 0.0166 (7) | 0.0164 (7) | 0.0171 (7) | −0.0003 (6) | 0.0005 (6) | −0.0002 (6) |
| C7 | 0.0151 (7) | 0.0231 (8) | 0.0170 (7) | −0.0003 (6) | −0.0010 (6) | 0.0014 (6) |
| C8 | 0.0230 (8) | 0.0296 (9) | 0.0155 (7) | −0.0026 (7) | −0.0008 (6) | −0.0023 (6) |
| C9 | 0.0172 (7) | 0.0240 (8) | 0.0185 (7) | 0.0007 (6) | −0.0021 (6) | −0.0051 (6) |
| C10 | 0.0166 (7) | 0.0156 (7) | 0.0248 (8) | −0.0011 (6) | −0.0012 (6) | −0.0050 (6) |
| C11 | 0.0155 (7) | 0.0267 (9) | 0.0227 (8) | 0.0031 (6) | 0.0026 (6) | 0.0035 (7) |
| C12 | 0.0218 (8) | 0.0225 (9) | 0.0218 (8) | 0.0022 (7) | 0.0052 (7) | 0.0042 (6) |
| C13 | 0.0246 (9) | 0.0382 (10) | 0.0272 (9) | −0.0007 (8) | −0.0031 (7) | 0.0105 (8) |
| C14 | 0.0175 (8) | 0.0197 (8) | 0.0297 (8) | −0.0019 (7) | −0.0022 (6) | −0.0050 (7) |
| C15 | 0.0218 (8) | 0.0232 (8) | 0.0245 (8) | 0.0049 (7) | −0.0040 (7) | −0.0010 (7) |
| C16 | 0.0170 (7) | 0.0254 (9) | 0.0166 (7) | −0.0004 (7) | 0.0011 (6) | 0.0049 (6) |
| C17 | 0.0277 (9) | 0.0285 (9) | 0.0238 (8) | 0.0007 (8) | −0.0080 (7) | −0.0025 (7) |
| C18 | 0.0230 (8) | 0.0338 (9) | 0.0181 (8) | −0.0042 (7) | −0.0020 (6) | −0.0002 (7) |
| C19 | 0.0171 (7) | 0.0191 (7) | 0.0204 (8) | −0.0013 (6) | 0.0001 (6) | −0.0024 (6) |
| O1—C5 | 1.4545 (18) | C7—C11 | 1.511 (2) |
| O1—C4 | 1.4691 (18) | C7—C8 | 1.530 (2) |
| O2—C12 | 1.357 (2) | C7—H7A | 1.0000 |
| O2—C6 | 1.4575 (19) | C8—C9 | 1.545 (2) |
| O3—C12 | 1.205 (2) | C8—H8A | 0.9900 |
| O4—C16 | 1.3495 (19) | C8—H8B | 0.9900 |
| O4—C14 | 1.4660 (19) | C9—C10 | 1.512 (2) |
| O5—C16 | 1.203 (2) | C9—H9A | 0.9900 |
| O6—C19 | 1.206 (2) | C9—H9B | 0.9900 |
| O7—C19 | 1.337 (2) | C10—C14 | 1.505 (2) |
| O7—H7 | 0.88 (2) | C11—C13 | 1.321 (2) |
| C1—C10 | 1.334 (2) | C11—C12 | 1.486 (2) |
| C1—C2 | 1.507 (2) | C13—H13A | 0.9500 |
| C1—H1A | 0.9500 | C13—H13B | 0.9500 |
| C2—C3 | 1.542 (2) | C14—H14A | 0.9900 |
| C2—H2A | 0.9900 | C14—H14B | 0.9900 |
| C2—H2B | 0.9900 | C15—H15A | 0.9800 |
| C3—C4 | 1.499 (2) | C15—H15B | 0.9800 |
| C3—H3A | 0.9900 | C15—H15C | 0.9800 |
| C3—H3B | 0.9900 | C16—C17 | 1.503 (2) |
| C4—C5 | 1.468 (2) | C17—C18 | 1.522 (2) |
| C4—C15 | 1.504 (2) | C17—H17A | 0.9900 |
| C5—C6 | 1.501 (2) | C17—H17B | 0.9900 |
| C5—H5A | 1.0000 | C18—C19 | 1.502 (2) |
| C6—C7 | 1.541 (2) | C18—H18A | 0.9900 |
| C6—H6A | 1.0000 | C18—H18B | 0.9900 |
| C5—O1—C4 | 60.30 (9) | C10—C9—C8 | 115.61 (13) |
| C12—O2—C6 | 110.19 (12) | C10—C9—H9A | 108.4 |
| C16—O4—C14 | 116.01 (12) | C8—C9—H9A | 108.4 |
| C19—O7—H7 | 109.5 (16) | C10—C9—H9B | 108.4 |
| C10—C1—C2 | 128.74 (16) | C8—C9—H9B | 108.4 |
| C10—C1—H1A | 115.6 | H9A—C9—H9B | 107.4 |
| C2—C1—H1A | 115.6 | C1—C10—C14 | 118.03 (15) |
| C1—C2—C3 | 113.86 (14) | C1—C10—C9 | 124.46 (15) |
| C1—C2—H2A | 108.8 | C14—C10—C9 | 117.48 (14) |
| C3—C2—H2A | 108.8 | C13—C11—C12 | 121.97 (16) |
| C1—C2—H2B | 108.8 | C13—C11—C7 | 130.49 (17) |
| C3—C2—H2B | 108.8 | C12—C11—C7 | 107.54 (13) |
| H2A—C2—H2B | 107.7 | O3—C12—O2 | 121.52 (16) |
| C4—C3—C2 | 110.68 (13) | O3—C12—C11 | 129.52 (16) |
| C4—C3—H3A | 109.5 | O2—C12—C11 | 108.92 (13) |
| C2—C3—H3A | 109.5 | C11—C13—H13A | 120.0 |
| C4—C3—H3B | 109.5 | C11—C13—H13B | 120.0 |
| C2—C3—H3B | 109.5 | H13A—C13—H13B | 120.0 |
| H3A—C3—H3B | 108.1 | O4—C14—C10 | 107.42 (12) |
| C5—C4—O1 | 59.36 (9) | O4—C14—H14A | 110.2 |
| C5—C4—C3 | 117.22 (14) | C10—C14—H14A | 110.2 |
| O1—C4—C3 | 115.97 (13) | O4—C14—H14B | 110.2 |
| C5—C4—C15 | 122.24 (14) | C10—C14—H14B | 110.2 |
| O1—C4—C15 | 112.27 (13) | H14A—C14—H14B | 108.5 |
| C3—C4—C15 | 116.31 (14) | C4—C15—H15A | 109.5 |
| O1—C5—C4 | 60.34 (9) | C4—C15—H15B | 109.5 |
| O1—C5—C6 | 118.69 (12) | H15A—C15—H15B | 109.5 |
| C4—C5—C6 | 122.12 (13) | C4—C15—H15C | 109.5 |
| O1—C5—H5A | 114.9 | H15A—C15—H15C | 109.5 |
| C4—C5—H5A | 114.9 | H15B—C15—H15C | 109.5 |
| C6—C5—H5A | 114.9 | O5—C16—O4 | 123.66 (15) |
| O2—C6—C5 | 108.69 (12) | O5—C16—C17 | 125.95 (15) |
| O2—C6—C7 | 105.78 (12) | O4—C16—C17 | 110.36 (14) |
| C5—C6—C7 | 111.72 (12) | C16—C17—C18 | 114.48 (15) |
| O2—C6—H6A | 110.2 | C16—C17—H17A | 108.6 |
| C5—C6—H6A | 110.2 | C18—C17—H17A | 108.6 |
| C7—C6—H6A | 110.2 | C16—C17—H17B | 108.6 |
| C11—C7—C8 | 115.82 (13) | C18—C17—H17B | 108.6 |
| C11—C7—C6 | 101.03 (12) | H17A—C17—H17B | 107.6 |
| C8—C7—C6 | 116.32 (13) | C19—C18—C17 | 114.15 (15) |
| C11—C7—H7A | 107.7 | C19—C18—H18A | 108.7 |
| C8—C7—H7A | 107.7 | C17—C18—H18A | 108.7 |
| C6—C7—H7A | 107.7 | C19—C18—H18B | 108.7 |
| C7—C8—C9 | 116.28 (13) | C17—C18—H18B | 108.7 |
| C7—C8—H8A | 108.2 | H18A—C18—H18B | 107.6 |
| C9—C8—H8A | 108.2 | O6—C19—O7 | 123.18 (15) |
| C7—C8—H8B | 108.2 | O6—C19—C18 | 125.75 (15) |
| C9—C8—H8B | 108.2 | O7—C19—C18 | 111.05 (14) |
| H8A—C8—H8B | 107.4 | ||
| C10—C1—C2—C3 | −100.0 (2) | C7—C8—C9—C10 | −47.66 (19) |
| C1—C2—C3—C4 | 75.03 (19) | C2—C1—C10—C14 | −175.00 (15) |
| C5—O1—C4—C3 | 107.62 (16) | C2—C1—C10—C9 | 3.1 (3) |
| C5—O1—C4—C15 | −115.31 (15) | C8—C9—C10—C1 | 128.93 (16) |
| C2—C3—C4—C5 | −85.28 (17) | C8—C9—C10—C14 | −53.01 (19) |
| C2—C3—C4—O1 | −152.51 (14) | C8—C7—C11—C13 | −34.8 (2) |
| C2—C3—C4—C15 | 72.17 (18) | C6—C7—C11—C13 | −161.43 (18) |
| C4—O1—C5—C6 | 112.70 (16) | C8—C7—C11—C12 | 146.07 (14) |
| C3—C4—C5—O1 | −105.53 (14) | C6—C7—C11—C12 | 19.48 (15) |
| C15—C4—C5—O1 | 98.46 (16) | C6—O2—C12—O3 | 171.71 (15) |
| O1—C4—C5—C6 | −107.15 (15) | C6—O2—C12—C11 | −10.25 (17) |
| C3—C4—C5—C6 | 147.32 (14) | C13—C11—C12—O3 | −8.2 (3) |
| C15—C4—C5—C6 | −8.7 (2) | C7—C11—C12—O3 | 170.97 (17) |
| C12—O2—C6—C5 | 143.08 (13) | C13—C11—C12—O2 | 173.94 (16) |
| C12—O2—C6—C7 | 22.97 (16) | C7—C11—C12—O2 | −6.87 (17) |
| O1—C5—C6—O2 | 57.76 (17) | C16—O4—C14—C10 | −175.73 (13) |
| C4—C5—C6—O2 | 128.95 (14) | C1—C10—C14—O4 | 99.00 (17) |
| O1—C5—C6—C7 | 174.11 (12) | C9—C10—C14—O4 | −79.19 (17) |
| C4—C5—C6—C7 | −114.70 (16) | C14—O4—C16—O5 | −3.4 (2) |
| O2—C6—C7—C11 | −25.13 (15) | C14—O4—C16—C17 | 174.58 (13) |
| C5—C6—C7—C11 | −143.23 (13) | O5—C16—C17—C18 | −0.4 (2) |
| O2—C6—C7—C8 | −151.39 (13) | O4—C16—C17—C18 | −178.27 (13) |
| C5—C6—C7—C8 | 90.51 (16) | C16—C17—C18—C19 | −89.65 (18) |
| C11—C7—C8—C9 | 176.24 (14) | C17—C18—C19—O6 | 0.4 (3) |
| C6—C7—C8—C9 | −65.30 (19) | C17—C18—C19—O7 | −178.44 (14) |
| H··· | ||||
| O7—H7···O1i | 0.88 (2) | 1.91 (3) | 2.7616 (16) | 162 (2) |
| C6—H6 | 1.00 | 2.60 | 3.173 (2) | 117 |
| C7—H7 | 1.00 | 2.40 | 3.3293 (19) | 154 |
| C14—H14 | 0.99 | 2.51 | 3.418 (2) | 153 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O7—H7⋯O1i | 0.88 (2) | 1.91 (3) | 2.7616 (16) | 162 (2) |
| C6—H6 | 1.00 | 2.60 | 3.173 (2) | 117 |
| C7—H7 | 1.00 | 2.40 | 3.3293 (19) | 154 |
| C14—H14 | 0.99 | 2.51 | 3.418 (2) | 153 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .