Literature DB >> 24765054

Monosuccinate ester of melampomagnolide B.

Venumadhav Janganati1, Narsimha Reddy Penthala1, Nikhil Reddy Madadi1, Sean Parkin2, Peter A Crooks1.   

Abstract

THE TITLE MONOSUCCINATE DERIVATIVE OF MELAMPOMAGNOLIDE B [SYSTEMATIC NAME: 4-(((1aR,7aS,10aS,10bS,E)-1a-methyl-8-meth-yl-ene-9-oxo-1a,2,3,6,7,7a,8,9,10a,10b-deca-hydro-oxireno[2',3':9,10]cyclo-deca-[1,2-b]furan-5-yl)meth-oxy)-4-oxo-butan-oic acid], C19H24O7, was obtained from the reaction of melampomagnolide B with succinic anhydride under nucleophilic addition reaction conditions. The mol-ecule is built up from fused ten-, five- (lactone) and three-membered (epoxide) rings. The inter-nal double bond in the ten-membered ring has the cis geometry (i.e. it is the E isomer). The lactone ring has an envelope-type conformation, with the (chiral) C atom opposite the lactone O atoms as the flap atom. In the crystal, O-H⋯O hydrogen bonds link the mol-ecules into chains parallel to the b-axis direction.

Entities:  

Year:  2014        PMID: 24765054      PMCID: PMC3998419          DOI: 10.1107/S1600536814002815

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of similar compounds, see: Nasim et al. (2011 ▶). For the isolation of a similar compound, see: El-Feraly (1984 ▶). For the structures and syntheses of similar compounds, see: Gonzalez et al. (1988 ▶); Macias et al. (1992 ▶); Casimir et al. (1995 ▶). Refinement progress was checked using routines in PLATON (Spek, 2009 ▶) and by the R-tensor (Parkin, 2000 ▶) The crystal was placed directly into the cold stream of a liquid nitro­gen based cryostat, according to published methods, see: Hope (1994 ▶); Parkin & Hope (1998 ▶).

Experimental

Crystal data

C19H24O7 M = 364.38 Orthorhombic, a = 8.7866 (2) Å b = 9.6082 (2) Å c = 21.0088 (5) Å V = 1773.63 (7) Å3 Z = 4 Cu Kα radiation μ = 0.87 mm−1 T = 90 K 0.21 × 0.20 × 0.18 mm

Data collection

Bruker X8 Proteum diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.818, T max = 0.889 21766 measured reflections 3218 independent reflections 3204 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.062 S = 1.03 3218 reflections 240 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.15 e Å−3 Absolute structure: Flack parameter determined using 1346 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▶) Absolute structure parameter: −0.02 (3) Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008b ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008b ▶); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008b ▶) and CIFFIX (Parkin, 2013 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814002815/sj5379sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814002815/sj5379Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814002815/sj5379Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C19H24O7Dx = 1.365 Mg m3
Mr = 364.38Cu Kα radiation, λ = 1.54178 Å
Orthorhombic, P212121Cell parameters from 9822 reflections
a = 8.7866 (2) Åθ = 5.5–68.3°
b = 9.6082 (2) ŵ = 0.87 mm1
c = 21.0088 (5) ÅT = 90 K
V = 1773.63 (7) Å3Wedge, colourless
Z = 40.21 × 0.20 × 0.18 mm
F(000) = 776
Bruker X8 Proteum diffractometer3218 independent reflections
Radiation source: fine-focus rotating anode3204 reflections with I > 2σ(I)
Detector resolution: 5.6 pixels mm-1Rint = 0.033
φ and ω scansθmax = 68.2°, θmin = 5.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −10→4
Tmin = 0.818, Tmax = 0.889k = −11→11
21766 measured reflectionsl = −24→25
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.024w = 1/[σ2(Fo2) + (0.0321P)2 + 0.4142P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.062(Δ/σ)max < 0.001
S = 1.03Δρmax = 0.16 e Å3
3218 reflectionsΔρmin = −0.15 e Å3
240 parametersExtinction correction: SHELXL2013 (Sheldrick, 2008a), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0033 (6)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack parameter determined using 1346 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
Secondary atom site location: difference Fourier mapAbsolute structure parameter: −0.02 (3)
Experimental. The crystal was mounted with polyisobutene oil on the tip of a fine glass fibre, fastened in a copper mounting pin with electrical solder. It was placed directly into the cold stream of a liquid nitrogen based cryostat, according to published methods (Hope, 1994; Parkin & Hope, 1998). Diffraction data were collected with the crystal at 90K, which is standard practice in this laboratory for the majority of flash-cooled crystals.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement progress was checked using routines in Platon (Spek, 2009), by the R-tensor (Parkin, 2000), and with the IUCr utility checkCIF.
xyzUiso*/Ueq
O10.20411 (13)0.31754 (11)0.44993 (5)0.0191 (3)
O20.23859 (13)0.11877 (11)0.55661 (5)0.0204 (3)
O30.26866 (16)−0.07622 (12)0.61342 (6)0.0307 (3)
O40.73762 (12)0.64045 (12)0.64763 (5)0.0201 (3)
O50.95459 (14)0.52306 (14)0.66681 (7)0.0309 (3)
O60.98811 (14)0.66939 (14)0.83142 (6)0.0290 (3)
O71.23791 (13)0.70884 (13)0.82130 (6)0.0229 (3)
H71.238 (3)0.690 (2)0.8623 (12)0.034*
C10.5239 (2)0.60864 (17)0.52307 (8)0.0214 (4)
H1A0.61710.60450.50020.026*
C20.3899 (2)0.66538 (17)0.48663 (8)0.0248 (4)
H2A0.42400.74630.46120.030*
H2B0.31270.69900.51730.030*
C30.3147 (2)0.55854 (17)0.44177 (8)0.0223 (3)
H3A0.24830.60760.41100.027*
H3B0.39440.50870.41750.027*
C40.22202 (19)0.45571 (16)0.47891 (7)0.0184 (3)
C50.30221 (18)0.33451 (16)0.50515 (7)0.0162 (3)
H5A0.41380.33130.49580.019*
C60.25592 (17)0.26798 (16)0.56681 (7)0.0167 (3)
H6A0.15800.30900.58220.020*
C70.38020 (17)0.28350 (17)0.61809 (7)0.0184 (3)
H7A0.48090.28580.59600.022*
C80.3701 (2)0.41277 (18)0.66040 (8)0.0227 (4)
H8A0.44720.40420.69450.027*
H8B0.26880.41340.68110.027*
C90.39325 (18)0.55441 (17)0.62692 (7)0.0199 (3)
H9A0.30060.57570.60190.024*
H9B0.40340.62730.66000.024*
C100.52939 (18)0.56347 (16)0.58308 (8)0.0190 (3)
C110.36737 (18)0.14530 (18)0.65197 (8)0.0217 (4)
C120.28777 (19)0.04748 (17)0.60846 (8)0.0220 (4)
C130.4154 (2)0.1067 (2)0.70887 (9)0.0300 (4)
H13A0.39940.01400.72310.036*
H13B0.46600.17170.73560.036*
C140.68183 (18)0.52273 (17)0.60986 (8)0.0223 (4)
H14A0.67160.43900.63700.027*
H14B0.75390.50150.57500.027*
C150.07576 (19)0.50907 (18)0.50694 (8)0.0231 (4)
H15A0.01560.43070.52300.035*
H15B0.01780.55840.47410.035*
H15C0.09860.57290.54200.035*
C160.87876 (18)0.62669 (18)0.67217 (7)0.0197 (3)
C170.9271 (2)0.75939 (19)0.70422 (8)0.0267 (4)
H17A0.85440.78030.73890.032*
H17B0.92100.83620.67290.032*
C181.0873 (2)0.7560 (2)0.73186 (8)0.0249 (4)
H18A1.15130.69470.70510.030*
H18B1.13090.85090.72970.030*
C191.09495 (19)0.70589 (17)0.79952 (8)0.0189 (3)
U11U22U33U12U13U23
O10.0226 (6)0.0180 (5)0.0165 (5)−0.0031 (4)−0.0027 (4)−0.0021 (4)
O20.0256 (6)0.0170 (5)0.0188 (5)−0.0029 (5)−0.0005 (5)0.0013 (4)
O30.0416 (7)0.0206 (6)0.0299 (6)−0.0002 (5)0.0045 (6)0.0061 (5)
O40.0175 (6)0.0213 (6)0.0215 (5)0.0006 (4)−0.0039 (4)−0.0023 (4)
O50.0225 (6)0.0267 (7)0.0436 (7)0.0041 (5)−0.0058 (6)−0.0024 (6)
O60.0205 (6)0.0381 (8)0.0284 (6)−0.0032 (5)0.0045 (5)0.0074 (6)
O70.0177 (6)0.0311 (6)0.0200 (6)−0.0015 (5)−0.0027 (4)0.0018 (5)
C10.0225 (8)0.0161 (7)0.0256 (9)−0.0040 (7)0.0014 (7)−0.0039 (6)
C20.0335 (9)0.0170 (8)0.0239 (8)−0.0047 (7)−0.0040 (7)0.0013 (7)
C30.0296 (9)0.0193 (8)0.0182 (7)−0.0033 (7)−0.0028 (7)0.0012 (6)
C40.0214 (8)0.0178 (8)0.0160 (7)−0.0010 (7)−0.0036 (6)−0.0025 (6)
C50.0160 (7)0.0170 (7)0.0156 (7)−0.0016 (6)−0.0004 (6)−0.0025 (6)
C60.0166 (7)0.0164 (7)0.0171 (7)−0.0003 (6)0.0005 (6)−0.0002 (6)
C70.0151 (7)0.0231 (8)0.0170 (7)−0.0003 (6)−0.0010 (6)0.0014 (6)
C80.0230 (8)0.0296 (9)0.0155 (7)−0.0026 (7)−0.0008 (6)−0.0023 (6)
C90.0172 (7)0.0240 (8)0.0185 (7)0.0007 (6)−0.0021 (6)−0.0051 (6)
C100.0166 (7)0.0156 (7)0.0248 (8)−0.0011 (6)−0.0012 (6)−0.0050 (6)
C110.0155 (7)0.0267 (9)0.0227 (8)0.0031 (6)0.0026 (6)0.0035 (7)
C120.0218 (8)0.0225 (9)0.0218 (8)0.0022 (7)0.0052 (7)0.0042 (6)
C130.0246 (9)0.0382 (10)0.0272 (9)−0.0007 (8)−0.0031 (7)0.0105 (8)
C140.0175 (8)0.0197 (8)0.0297 (8)−0.0019 (7)−0.0022 (6)−0.0050 (7)
C150.0218 (8)0.0232 (8)0.0245 (8)0.0049 (7)−0.0040 (7)−0.0010 (7)
C160.0170 (7)0.0254 (9)0.0166 (7)−0.0004 (7)0.0011 (6)0.0049 (6)
C170.0277 (9)0.0285 (9)0.0238 (8)0.0007 (8)−0.0080 (7)−0.0025 (7)
C180.0230 (8)0.0338 (9)0.0181 (8)−0.0042 (7)−0.0020 (6)−0.0002 (7)
C190.0171 (7)0.0191 (7)0.0204 (8)−0.0013 (6)0.0001 (6)−0.0024 (6)
O1—C51.4545 (18)C7—C111.511 (2)
O1—C41.4691 (18)C7—C81.530 (2)
O2—C121.357 (2)C7—H7A1.0000
O2—C61.4575 (19)C8—C91.545 (2)
O3—C121.205 (2)C8—H8A0.9900
O4—C161.3495 (19)C8—H8B0.9900
O4—C141.4660 (19)C9—C101.512 (2)
O5—C161.203 (2)C9—H9A0.9900
O6—C191.206 (2)C9—H9B0.9900
O7—C191.337 (2)C10—C141.505 (2)
O7—H70.88 (2)C11—C131.321 (2)
C1—C101.334 (2)C11—C121.486 (2)
C1—C21.507 (2)C13—H13A0.9500
C1—H1A0.9500C13—H13B0.9500
C2—C31.542 (2)C14—H14A0.9900
C2—H2A0.9900C14—H14B0.9900
C2—H2B0.9900C15—H15A0.9800
C3—C41.499 (2)C15—H15B0.9800
C3—H3A0.9900C15—H15C0.9800
C3—H3B0.9900C16—C171.503 (2)
C4—C51.468 (2)C17—C181.522 (2)
C4—C151.504 (2)C17—H17A0.9900
C5—C61.501 (2)C17—H17B0.9900
C5—H5A1.0000C18—C191.502 (2)
C6—C71.541 (2)C18—H18A0.9900
C6—H6A1.0000C18—H18B0.9900
C5—O1—C460.30 (9)C10—C9—C8115.61 (13)
C12—O2—C6110.19 (12)C10—C9—H9A108.4
C16—O4—C14116.01 (12)C8—C9—H9A108.4
C19—O7—H7109.5 (16)C10—C9—H9B108.4
C10—C1—C2128.74 (16)C8—C9—H9B108.4
C10—C1—H1A115.6H9A—C9—H9B107.4
C2—C1—H1A115.6C1—C10—C14118.03 (15)
C1—C2—C3113.86 (14)C1—C10—C9124.46 (15)
C1—C2—H2A108.8C14—C10—C9117.48 (14)
C3—C2—H2A108.8C13—C11—C12121.97 (16)
C1—C2—H2B108.8C13—C11—C7130.49 (17)
C3—C2—H2B108.8C12—C11—C7107.54 (13)
H2A—C2—H2B107.7O3—C12—O2121.52 (16)
C4—C3—C2110.68 (13)O3—C12—C11129.52 (16)
C4—C3—H3A109.5O2—C12—C11108.92 (13)
C2—C3—H3A109.5C11—C13—H13A120.0
C4—C3—H3B109.5C11—C13—H13B120.0
C2—C3—H3B109.5H13A—C13—H13B120.0
H3A—C3—H3B108.1O4—C14—C10107.42 (12)
C5—C4—O159.36 (9)O4—C14—H14A110.2
C5—C4—C3117.22 (14)C10—C14—H14A110.2
O1—C4—C3115.97 (13)O4—C14—H14B110.2
C5—C4—C15122.24 (14)C10—C14—H14B110.2
O1—C4—C15112.27 (13)H14A—C14—H14B108.5
C3—C4—C15116.31 (14)C4—C15—H15A109.5
O1—C5—C460.34 (9)C4—C15—H15B109.5
O1—C5—C6118.69 (12)H15A—C15—H15B109.5
C4—C5—C6122.12 (13)C4—C15—H15C109.5
O1—C5—H5A114.9H15A—C15—H15C109.5
C4—C5—H5A114.9H15B—C15—H15C109.5
C6—C5—H5A114.9O5—C16—O4123.66 (15)
O2—C6—C5108.69 (12)O5—C16—C17125.95 (15)
O2—C6—C7105.78 (12)O4—C16—C17110.36 (14)
C5—C6—C7111.72 (12)C16—C17—C18114.48 (15)
O2—C6—H6A110.2C16—C17—H17A108.6
C5—C6—H6A110.2C18—C17—H17A108.6
C7—C6—H6A110.2C16—C17—H17B108.6
C11—C7—C8115.82 (13)C18—C17—H17B108.6
C11—C7—C6101.03 (12)H17A—C17—H17B107.6
C8—C7—C6116.32 (13)C19—C18—C17114.15 (15)
C11—C7—H7A107.7C19—C18—H18A108.7
C8—C7—H7A107.7C17—C18—H18A108.7
C6—C7—H7A107.7C19—C18—H18B108.7
C7—C8—C9116.28 (13)C17—C18—H18B108.7
C7—C8—H8A108.2H18A—C18—H18B107.6
C9—C8—H8A108.2O6—C19—O7123.18 (15)
C7—C8—H8B108.2O6—C19—C18125.75 (15)
C9—C8—H8B108.2O7—C19—C18111.05 (14)
H8A—C8—H8B107.4
C10—C1—C2—C3−100.0 (2)C7—C8—C9—C10−47.66 (19)
C1—C2—C3—C475.03 (19)C2—C1—C10—C14−175.00 (15)
C5—O1—C4—C3107.62 (16)C2—C1—C10—C93.1 (3)
C5—O1—C4—C15−115.31 (15)C8—C9—C10—C1128.93 (16)
C2—C3—C4—C5−85.28 (17)C8—C9—C10—C14−53.01 (19)
C2—C3—C4—O1−152.51 (14)C8—C7—C11—C13−34.8 (2)
C2—C3—C4—C1572.17 (18)C6—C7—C11—C13−161.43 (18)
C4—O1—C5—C6112.70 (16)C8—C7—C11—C12146.07 (14)
C3—C4—C5—O1−105.53 (14)C6—C7—C11—C1219.48 (15)
C15—C4—C5—O198.46 (16)C6—O2—C12—O3171.71 (15)
O1—C4—C5—C6−107.15 (15)C6—O2—C12—C11−10.25 (17)
C3—C4—C5—C6147.32 (14)C13—C11—C12—O3−8.2 (3)
C15—C4—C5—C6−8.7 (2)C7—C11—C12—O3170.97 (17)
C12—O2—C6—C5143.08 (13)C13—C11—C12—O2173.94 (16)
C12—O2—C6—C722.97 (16)C7—C11—C12—O2−6.87 (17)
O1—C5—C6—O257.76 (17)C16—O4—C14—C10−175.73 (13)
C4—C5—C6—O2128.95 (14)C1—C10—C14—O499.00 (17)
O1—C5—C6—C7174.11 (12)C9—C10—C14—O4−79.19 (17)
C4—C5—C6—C7−114.70 (16)C14—O4—C16—O5−3.4 (2)
O2—C6—C7—C11−25.13 (15)C14—O4—C16—C17174.58 (13)
C5—C6—C7—C11−143.23 (13)O5—C16—C17—C18−0.4 (2)
O2—C6—C7—C8−151.39 (13)O4—C16—C17—C18−178.27 (13)
C5—C6—C7—C890.51 (16)C16—C17—C18—C19−89.65 (18)
C11—C7—C8—C9176.24 (14)C17—C18—C19—O60.4 (3)
C6—C7—C8—C9−65.30 (19)C17—C18—C19—O7−178.44 (14)
D—H···AD—HH···AD···AD—H···A
O7—H7···O1i0.88 (2)1.91 (3)2.7616 (16)162 (2)
C6—H6A···O6ii1.002.603.173 (2)117
C7—H7A···O1iii1.002.403.3293 (19)154
C14—H14A···O7iv0.992.513.418 (2)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O7—H7⋯O1i 0.88 (2)1.91 (3)2.7616 (16)162 (2)
C6—H6A⋯O6ii 1.002.603.173 (2)117
C7—H7A⋯O1iii 1.002.403.3293 (19)154
C14—H14A⋯O7iv 0.992.513.418 (2)153

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  5 in total

1.  Expansion of scalar validation criteria to three dimensions: the R tensor

Authors: 
Journal:  Acta Crystallogr A       Date:  2000-03       Impact factor: 2.290

2.  Melampomagnolide B: a new antileukemic sesquiterpene.

Authors:  Shama Nasim; ShanShan Pei; Fred K Hagen; Craig T Jordan; Peter A Crooks
Journal:  Bioorg Med Chem       Date:  2011-01-06       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Use of intensity quotients and differences in absolute structure refinement.

Authors:  Simon Parsons; Howard D Flack; Trixie Wagner
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2013-05-17

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  Succinamide derivatives of melampomagnolide B and their anti-cancer activities.

Authors:  Venumadhav Janganati; Jessica Ponder; Shraddha Thakkar; Craig T Jordan; Peter A Crooks
Journal:  Bioorg Med Chem       Date:  2017-05-08       Impact factor: 3.641

  1 in total

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