| Literature DB >> 24765024 |
Manel Essid1, Houda Marouani1, Mohamed Rzaigui1.
Abstract
In the crystal structure of the title compound, C5H14N2 (2+)·2HC2O4 (-), the two crystallographically independent hydrogen oxalate anions are linked by strong inter-molecular O-H⋯O hydrogen bonds, forming two independent corrugated chains parallel to the b axis. These chains are further connected by N-H⋯O and C-H⋯O hydrogen bonds originating from the organic cations, forming a three-dimensional network. The diprotonated piperazine ring adopts a chair conformation, with the methyl group occupying an equatorial position.Entities:
Year: 2014 PMID: 24765024 PMCID: PMC3998474 DOI: 10.1107/S1600536814003559
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H14N22+·2C2HO4− | |
| Monoclinic, | Ag |
| Hall symbol: -C 2yc | Cell parameters from 25 reflections |
| θ = 9–11° | |
| µ = 0.08 mm−1 | |
| β = 104.05 (2)° | Prism, colourless |
| 0.35 × 0.25 × 0.15 mm | |
| Enraf–Nonius CAD-4 diffractometer | |
| Radiation source: fine-focus sealed tube | θmax = 28.0°, θmin = 2.1° |
| Graphite monochromator | |
| non–profiled ω scans | |
| 7879 measured reflections | |
| 5758 independent reflections | 2 standard reflections every 120 min |
| 3621 reflections with | intensity decay: none |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 5757 reflections | (Δ/σ)max = 0.006 |
| 175 parameters | Δρmax = 0.41 e Å−3 |
| 0 restraints | Δρmin = −0.40 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O5 | 0.26348 (5) | 0.43588 (15) | 0.19137 (4) | 0.02858 (19) | |
| H5 | 0.2892 | 0.3099 | 0.1980 | 0.043* | |
| O6 | 0.39346 (6) | 0.58784 (19) | 0.23195 (5) | 0.0436 (3) | |
| O7 | 0.19490 (5) | 0.86264 (16) | 0.17619 (4) | 0.02856 (19) | |
| O8 | 0.32494 (5) | 1.02361 (15) | 0.21317 (4) | 0.02746 (18) | |
| C8 | 0.27389 (6) | 0.85255 (19) | 0.19799 (4) | 0.02018 (18) | |
| C9 | 0.31747 (7) | 0.60820 (19) | 0.20900 (4) | 0.02266 (19) | |
| O1 | 0.12751 (6) | −0.01254 (18) | 0.05548 (4) | 0.0373 (2) | |
| O2 | 0.26291 (6) | 0.13819 (16) | 0.08184 (4) | 0.0348 (2) | |
| H2 | 0.2366 | 0.2642 | 0.0780 | 0.052* | |
| O3 | 0.20184 (6) | −0.45041 (16) | 0.06515 (4) | 0.0331 (2) | |
| O4 | 0.33311 (5) | −0.28288 (16) | 0.09557 (4) | 0.0334 (2) | |
| C6 | 0.20627 (7) | −0.03411 (19) | 0.07029 (5) | 0.0231 (2) | |
| C7 | 0.25214 (7) | −0.27840 (19) | 0.07768 (4) | 0.02206 (19) | |
| N1 | 0.45019 (6) | 0.07065 (18) | 0.09040 (4) | 0.02256 (18) | |
| H1 | 0.4022 | −0.0041 | 0.0963 | 0.027* | |
| N2 | 0.57669 (6) | 0.01455 (19) | 0.18579 (4) | 0.0264 (2) | |
| H2C | 0.5933 | −0.0381 | 0.2179 | 0.032* | |
| H2D | 0.6228 | 0.0897 | 0.1786 | 0.032* | |
| C1 | 0.42704 (10) | 0.1657 (3) | 0.03769 (5) | 0.0418 (3) | |
| H1A | 0.3819 | 0.2830 | 0.0347 | 0.063* | |
| H1B | 0.4060 | 0.0401 | 0.0143 | 0.063* | |
| H1C | 0.4783 | 0.2351 | 0.0302 | 0.063* | |
| C2 | 0.47453 (7) | 0.2672 (2) | 0.12710 (5) | 0.0261 (2) | |
| H2A | 0.4245 | 0.3722 | 0.1237 | 0.031* | |
| H2B | 0.5225 | 0.3562 | 0.1193 | 0.031* | |
| C3 | 0.50225 (7) | 0.1799 (2) | 0.18088 (5) | 0.0270 (2) | |
| H3A | 0.5198 | 0.3118 | 0.2037 | 0.032* | |
| H3B | 0.4532 | 0.1011 | 0.1899 | 0.032* | |
| C4 | 0.55098 (8) | −0.1872 (2) | 0.15092 (5) | 0.0298 (2) | |
| H4A | 0.5024 | −0.2710 | 0.1593 | 0.036* | |
| H4B | 0.6002 | −0.2952 | 0.1547 | 0.036* | |
| C5 | 0.52395 (7) | −0.1014 (2) | 0.09704 (5) | 0.0284 (2) | |
| H5A | 0.5739 | −0.0274 | 0.0881 | 0.034* | |
| H5B | 0.5057 | −0.2342 | 0.0746 | 0.034* |
| O5 | 0.0224 (3) | 0.0150 (3) | 0.0441 (5) | 0.0008 (3) | −0.0001 (3) | −0.0021 (3) |
| O6 | 0.0219 (4) | 0.0272 (5) | 0.0706 (7) | 0.0024 (3) | −0.0106 (4) | 0.0053 (5) |
| O7 | 0.0187 (3) | 0.0206 (4) | 0.0417 (5) | 0.0014 (3) | −0.0019 (3) | 0.0026 (3) |
| O8 | 0.0244 (4) | 0.0164 (3) | 0.0378 (5) | −0.0035 (3) | 0.0001 (3) | −0.0013 (3) |
| C8 | 0.0195 (4) | 0.0160 (4) | 0.0237 (4) | 0.0000 (3) | 0.0026 (3) | 0.0004 (3) |
| C9 | 0.0187 (4) | 0.0172 (4) | 0.0299 (5) | 0.0003 (3) | 0.0016 (3) | 0.0008 (4) |
| O1 | 0.0189 (4) | 0.0270 (5) | 0.0608 (6) | 0.0032 (3) | −0.0003 (4) | 0.0064 (4) |
| O2 | 0.0218 (4) | 0.0144 (3) | 0.0647 (6) | −0.0003 (3) | 0.0039 (4) | −0.0006 (4) |
| O3 | 0.0243 (4) | 0.0166 (4) | 0.0532 (6) | −0.0030 (3) | −0.0006 (4) | −0.0024 (4) |
| O4 | 0.0180 (3) | 0.0194 (4) | 0.0588 (6) | 0.0012 (3) | 0.0011 (3) | 0.0037 (4) |
| C6 | 0.0204 (4) | 0.0166 (4) | 0.0308 (5) | 0.0008 (3) | 0.0032 (4) | 0.0021 (4) |
| C7 | 0.0196 (4) | 0.0146 (4) | 0.0304 (5) | −0.0001 (3) | 0.0029 (3) | 0.0002 (4) |
| N1 | 0.0172 (3) | 0.0229 (4) | 0.0255 (4) | −0.0018 (3) | 0.0012 (3) | 0.0008 (3) |
| N2 | 0.0183 (4) | 0.0270 (5) | 0.0298 (5) | −0.0009 (3) | −0.0022 (3) | 0.0022 (4) |
| C1 | 0.0363 (6) | 0.0563 (10) | 0.0291 (6) | −0.0029 (7) | 0.0009 (5) | 0.0108 (6) |
| C2 | 0.0234 (4) | 0.0174 (4) | 0.0347 (6) | 0.0014 (4) | 0.0018 (4) | −0.0006 (4) |
| C3 | 0.0220 (4) | 0.0276 (5) | 0.0298 (5) | 0.0005 (4) | 0.0034 (4) | −0.0054 (4) |
| C4 | 0.0229 (5) | 0.0185 (5) | 0.0437 (7) | 0.0031 (4) | −0.0006 (4) | 0.0006 (5) |
| C5 | 0.0221 (4) | 0.0259 (5) | 0.0367 (6) | 0.0013 (4) | 0.0061 (4) | −0.0075 (5) |
| O5—C9 | 1.3061 (14) | N2—C4 | 1.4805 (17) |
| O5—H5 | 0.8200 | N2—H2C | 0.9000 |
| O6—C9 | 1.2070 (13) | N2—H2D | 0.9000 |
| O7—C8 | 1.2358 (12) | C1—H1A | 0.9600 |
| O8—C8 | 1.2622 (13) | C1—H1B | 0.9600 |
| C8—C9 | 1.5437 (16) | C1—H1C | 0.9600 |
| O1—C6 | 1.2063 (13) | C2—C3 | 1.5068 (18) |
| O2—C6 | 1.3067 (14) | C2—H2A | 0.9700 |
| O2—H2 | 0.8200 | C2—H2B | 0.9700 |
| O3—C7 | 1.2493 (14) | C3—H3A | 0.9700 |
| O4—C7 | 1.2424 (13) | C3—H3B | 0.9700 |
| C6—C7 | 1.5530 (16) | C4—C5 | 1.5059 (19) |
| N1—C2 | 1.4854 (16) | C4—H4A | 0.9700 |
| N1—C5 | 1.4897 (15) | C4—H4B | 0.9700 |
| N1—C1 | 1.4934 (17) | C5—H5A | 0.9700 |
| N1—H1 | 0.9100 | C5—H5B | 0.9700 |
| N2—C3 | 1.4770 (15) | ||
| C9—O5—H5 | 109.5 | H1A—C1—H1B | 109.5 |
| O7—C8—O8 | 126.96 (10) | N1—C1—H1C | 109.5 |
| O7—C8—C9 | 118.57 (9) | H1A—C1—H1C | 109.5 |
| O8—C8—C9 | 114.46 (9) | H1B—C1—H1C | 109.5 |
| O6—C9—O5 | 125.91 (11) | N1—C2—C3 | 111.87 (10) |
| O6—C9—C8 | 121.33 (10) | N1—C2—H2A | 109.2 |
| O5—C9—C8 | 112.75 (9) | C3—C2—H2A | 109.2 |
| C6—O2—H2 | 109.5 | N1—C2—H2B | 109.2 |
| O1—C6—O2 | 125.63 (11) | C3—C2—H2B | 109.2 |
| O1—C6—C7 | 122.46 (10) | H2A—C2—H2B | 107.9 |
| O2—C6—C7 | 111.90 (9) | N2—C3—C2 | 109.40 (10) |
| O4—C7—O3 | 127.31 (10) | N2—C3—H3A | 109.8 |
| O4—C7—C6 | 117.67 (9) | C2—C3—H3A | 109.8 |
| O3—C7—C6 | 115.01 (9) | N2—C3—H3B | 109.8 |
| C2—N1—C5 | 110.32 (9) | C2—C3—H3B | 109.8 |
| C2—N1—C1 | 109.73 (11) | H3A—C3—H3B | 108.2 |
| C5—N1—C1 | 110.72 (11) | N2—C4—C5 | 110.04 (10) |
| C2—N1—H1 | 108.7 | N2—C4—H4A | 109.7 |
| C5—N1—H1 | 108.7 | C5—C4—H4A | 109.7 |
| C1—N1—H1 | 108.7 | N2—C4—H4B | 109.7 |
| C3—N2—C4 | 110.41 (9) | C5—C4—H4B | 109.7 |
| C3—N2—H2C | 109.6 | H4A—C4—H4B | 108.2 |
| C4—N2—H2C | 109.6 | N1—C5—C4 | 110.90 (10) |
| C3—N2—H2D | 109.6 | N1—C5—H5A | 109.5 |
| C4—N2—H2D | 109.6 | C4—C5—H5A | 109.5 |
| H2C—N2—H2D | 108.1 | N1—C5—H5B | 109.5 |
| N1—C1—H1A | 109.5 | C4—C5—H5B | 109.5 |
| N1—C1—H1B | 109.5 | H5A—C5—H5B | 108.0 |
| H··· | ||||
| O2—H2···O3i | 0.82 | 1.72 | 2.5242 (17) | 167 |
| O5—H5···O8ii | 0.82 | 1.74 | 2.5467 (16) | 169 |
| N1—H1···O4 | 0.91 | 1.92 | 2.7452 (15) | 151 |
| N1—H1···O2 | 0.91 | 2.27 | 2.9085 (13) | 127 |
| N2—H2 | 0.90 | 2.03 | 2.8080 (14) | 144 |
| N2—H2 | 0.90 | 2.51 | 3.2564 (19) | 141 |
| N2—H2 | 0.90 | 1.93 | 2.7633 (16) | 154 |
| N2—H2 | 0.90 | 2.32 | 2.9243 (13) | 125 |
| C1—H1 | 0.96 | 2.45 | 3.2653 (19) | 142 |
| C2—H2 | 0.97 | 2.44 | 3.3533 (18) | 157 |
| C3—H3 | 0.97 | 2.49 | 3.4334 (18) | 163 |
| C3—H3 | 0.97 | 2.29 | 3.2319 (15) | 164 |
| C4—H4 | 0.97 | 2.43 | 3.3665 (18) | 163 |
| C5—H5 | 0.97 | 2.28 | 3.2269 (16) | 165 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H2⋯O3i | 0.82 | 1.72 | 2.5242 (17) | 167 |
| O5—H5⋯O8ii | 0.82 | 1.74 | 2.5467 (16) | 169 |
| N1—H1⋯O4 | 0.91 | 1.92 | 2.7452 (15) | 151 |
| N1—H1⋯O2 | 0.91 | 2.27 | 2.9085 (13) | 127 |
| N2—H2 | 0.90 | 2.03 | 2.8080 (14) | 144 |
| N2—H2 | 0.90 | 2.51 | 3.2564 (19) | 141 |
| N2—H2 | 0.90 | 1.93 | 2.7633 (16) | 154 |
| N2—H2 | 0.90 | 2.32 | 2.9243 (13) | 125 |
| C1—H1 | 0.96 | 2.45 | 3.2653 (19) | 142 |
| C2—H2 | 0.97 | 2.44 | 3.3533 (18) | 157 |
| C3—H3 | 0.97 | 2.49 | 3.4334 (18) | 163 |
| C3—H3 | 0.97 | 2.29 | 3.2319 (15) | 164 |
| C4—H4 | 0.97 | 2.43 | 3.3665 (18) | 163 |
| C5—H5 | 0.97 | 2.28 | 3.2269 (16) | 165 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .