| Literature DB >> 24765018 |
Thammarse S Yamuna1, Manpreet Kaur1, Brian J Anderson2, Jerry P Jasinski2, H S Yathirajan1.
Abstract
In the title salt, C6H12N3 (+)·C7H3N2O7 (-), the imidazole ring is planar, with a maximum deviation of 0.0013 (14) Å for the N attached to the propanaminium group. In the anion, a single intra-molecular O-H⋯O hydrogen bond is observed. The mean planes of the nitro groups in the anion are twisted from the benzene ring mean plane making dihedral angles of 24.7 (9) and 3.9 (6)°. In the crystal, the ammonium H atoms form N-H⋯N and N-H⋯O hydrogen bonds, resulting in an infinite chain along [111]. In addition to the classical hydrogen bonds, weak C-H⋯O and π-π [centroid-centroid distance = 3.7124 (9) Å] inter-actions are also observed, which lead to the formation a three-dimensional supramolecular structure that links the chains into layers along the bc plane.Entities:
Year: 2014 PMID: 24765018 PMCID: PMC3998440 DOI: 10.1107/S1600536814003146
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H12N3+·C7H3N2O7− | |
| Triclinic, | |
| Cu | |
| Cell parameters from 2218 reflections | |
| θ = 4.2–72.3° | |
| α = 93.075 (6)° | µ = 1.09 mm−1 |
| β = 95.863 (5)° | |
| γ = 104.944 (6)° | Irregular, yellow |
| 0.22 × 0.14 × 0.12 mm |
| Agilent Xcalibur (Eos, Gemini) diffractometer | 2953 independent reflections |
| Radiation source: Enhance (Cu) X-ray Source | 2582 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.0416 pixels mm-1 | θmax = 72.5°, θmin = 4.2° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 4664 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.25 e Å−3 | |
| 2953 reflections | Δρmin = −0.25 e Å−3 |
| 229 parameters | Extinction correction: |
| 0 restraints | Extinction coefficient: 0.0087 (12) |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1B | −0.19166 (16) | 0.67530 (11) | 0.52669 (10) | 0.0288 (3) | |
| O2B | −0.38294 (16) | 0.47146 (11) | 0.40815 (11) | 0.0309 (3) | |
| H2B | −0.3493 | 0.5402 | 0.4563 | 0.046* | |
| O3B | −0.25490 (16) | 0.37708 (11) | 0.26154 (11) | 0.0308 (3) | |
| O4B | 0.41267 (18) | 0.58644 (12) | 0.16868 (12) | 0.0360 (3) | |
| O5B | 0.59770 (17) | 0.75622 (12) | 0.28233 (13) | 0.0378 (3) | |
| O6B | 0.34447 (19) | 0.93705 (13) | 0.62652 (14) | 0.0466 (4) | |
| O7B | 0.02866 (19) | 0.91669 (12) | 0.61489 (13) | 0.0407 (3) | |
| N1B | 0.1720 (2) | 0.88464 (13) | 0.58134 (13) | 0.0293 (3) | |
| N2B | 0.43937 (19) | 0.67328 (13) | 0.25380 (13) | 0.0277 (3) | |
| C1B | −0.0459 (2) | 0.68012 (14) | 0.46271 (13) | 0.0220 (3) | |
| C2B | −0.0571 (2) | 0.57869 (14) | 0.36592 (13) | 0.0216 (3) | |
| C3B | 0.0986 (2) | 0.57928 (14) | 0.29803 (13) | 0.0224 (3) | |
| H3B | 0.0860 | 0.5126 | 0.2331 | 0.027* | |
| C4B | 0.2742 (2) | 0.67709 (15) | 0.32417 (14) | 0.0235 (3) | |
| C5B | 0.2969 (2) | 0.77675 (14) | 0.41652 (14) | 0.0242 (3) | |
| H5B | 0.4187 | 0.8428 | 0.4339 | 0.029* | |
| C6B | 0.1396 (2) | 0.77858 (15) | 0.48287 (14) | 0.0240 (3) | |
| C7B | −0.2410 (2) | 0.46764 (15) | 0.34003 (14) | 0.0240 (3) | |
| N1A | −0.2236 (2) | 0.05132 (13) | −0.17302 (13) | 0.0301 (3) | |
| N2A | −0.01482 (18) | 0.22563 (12) | −0.06974 (12) | 0.0236 (3) | |
| N3A | 0.34673 (18) | 0.20535 (12) | 0.28180 (12) | 0.0247 (3) | |
| H3AA | 0.3273 | 0.1193 | 0.2584 | 0.030* | |
| H3AB | 0.3097 | 0.2146 | 0.3598 | 0.030* | |
| H3AC | 0.4776 | 0.2474 | 0.2829 | 0.030* | |
| C1A | −0.0393 (2) | 0.12597 (15) | −0.15759 (15) | 0.0267 (3) | |
| H1A | 0.0635 | 0.1112 | −0.2029 | 0.032* | |
| C2A | −0.3211 (2) | 0.10673 (16) | −0.08994 (16) | 0.0311 (4) | |
| H2A | −0.4575 | 0.0745 | −0.0793 | 0.037* | |
| C3A | −0.1954 (2) | 0.21366 (16) | −0.02562 (15) | 0.0290 (4) | |
| H3A | −0.2257 | 0.2692 | 0.0372 | 0.035* | |
| C4A | 0.1721 (2) | 0.32486 (15) | −0.02842 (14) | 0.0265 (3) | |
| H4AA | 0.1419 | 0.4032 | 0.0094 | 0.032* | |
| H4AB | 0.2423 | 0.3502 | −0.1023 | 0.032* | |
| C5A | 0.3076 (2) | 0.27761 (16) | 0.06655 (14) | 0.0270 (3) | |
| H5AA | 0.3236 | 0.1929 | 0.0335 | 0.032* | |
| H5AB | 0.4405 | 0.3407 | 0.0792 | 0.032* | |
| C6A | 0.2253 (2) | 0.26209 (16) | 0.19094 (14) | 0.0276 (3) | |
| H6AA | 0.2200 | 0.3483 | 0.2271 | 0.033* | |
| H6AB | 0.0877 | 0.2051 | 0.1769 | 0.033* |
| O1B | 0.0263 (6) | 0.0300 (6) | 0.0273 (6) | 0.0012 (5) | 0.0097 (4) | −0.0047 (4) |
| O2B | 0.0247 (6) | 0.0304 (6) | 0.0321 (6) | −0.0027 (4) | 0.0082 (5) | −0.0070 (5) |
| O3B | 0.0276 (6) | 0.0282 (6) | 0.0318 (6) | 0.0003 (5) | 0.0045 (5) | −0.0081 (5) |
| O4B | 0.0360 (6) | 0.0319 (6) | 0.0414 (7) | 0.0081 (5) | 0.0168 (5) | −0.0040 (5) |
| O5B | 0.0229 (6) | 0.0376 (7) | 0.0501 (8) | 0.0011 (5) | 0.0111 (5) | 0.0012 (6) |
| O6B | 0.0351 (7) | 0.0402 (8) | 0.0540 (8) | −0.0004 (6) | −0.0049 (6) | −0.0192 (6) |
| O7B | 0.0393 (7) | 0.0324 (7) | 0.0472 (8) | 0.0026 (5) | 0.0160 (6) | −0.0121 (6) |
| N1B | 0.0319 (7) | 0.0233 (7) | 0.0293 (7) | 0.0012 (5) | 0.0057 (6) | −0.0025 (5) |
| N2B | 0.0253 (7) | 0.0258 (7) | 0.0339 (7) | 0.0072 (5) | 0.0088 (5) | 0.0060 (5) |
| C1B | 0.0230 (7) | 0.0232 (7) | 0.0194 (7) | 0.0049 (6) | 0.0033 (5) | 0.0023 (6) |
| C2B | 0.0215 (7) | 0.0215 (7) | 0.0207 (7) | 0.0035 (6) | 0.0021 (5) | 0.0028 (6) |
| C3B | 0.0255 (7) | 0.0216 (7) | 0.0210 (7) | 0.0072 (6) | 0.0043 (6) | 0.0016 (5) |
| C4B | 0.0220 (7) | 0.0248 (7) | 0.0258 (7) | 0.0076 (6) | 0.0066 (6) | 0.0059 (6) |
| C5B | 0.0215 (7) | 0.0221 (7) | 0.0268 (7) | 0.0017 (6) | 0.0023 (6) | 0.0051 (6) |
| C6B | 0.0270 (8) | 0.0208 (7) | 0.0226 (7) | 0.0041 (6) | 0.0017 (6) | 0.0002 (6) |
| C7B | 0.0240 (7) | 0.0253 (7) | 0.0213 (7) | 0.0047 (6) | 0.0016 (5) | 0.0001 (6) |
| N1A | 0.0291 (7) | 0.0246 (7) | 0.0347 (7) | 0.0050 (5) | 0.0016 (6) | −0.0005 (6) |
| N2A | 0.0241 (6) | 0.0230 (6) | 0.0229 (6) | 0.0049 (5) | 0.0032 (5) | 0.0002 (5) |
| N3A | 0.0258 (6) | 0.0224 (6) | 0.0241 (6) | 0.0041 (5) | 0.0025 (5) | −0.0028 (5) |
| C1A | 0.0273 (8) | 0.0256 (8) | 0.0277 (8) | 0.0078 (6) | 0.0050 (6) | −0.0019 (6) |
| C2A | 0.0262 (8) | 0.0311 (8) | 0.0354 (9) | 0.0045 (6) | 0.0070 (6) | 0.0059 (7) |
| C3A | 0.0293 (8) | 0.0308 (8) | 0.0286 (8) | 0.0093 (6) | 0.0093 (6) | 0.0013 (6) |
| C4A | 0.0268 (8) | 0.0245 (7) | 0.0248 (7) | 0.0007 (6) | 0.0048 (6) | −0.0001 (6) |
| C5A | 0.0237 (7) | 0.0293 (8) | 0.0258 (8) | 0.0029 (6) | 0.0054 (6) | −0.0020 (6) |
| C6A | 0.0301 (8) | 0.0301 (8) | 0.0256 (8) | 0.0124 (6) | 0.0060 (6) | 0.0017 (6) |
| O1B—C1B | 1.2803 (18) | N1A—C2A | 1.375 (2) |
| O2B—H2B | 0.8400 | N2A—C1A | 1.3472 (19) |
| O2B—C7B | 1.3019 (18) | N2A—C3A | 1.3748 (19) |
| O3B—C7B | 1.2249 (18) | N2A—C4A | 1.4660 (19) |
| O4B—N2B | 1.2303 (18) | N3A—H3AA | 0.9100 |
| O5B—N2B | 1.2261 (18) | N3A—H3AB | 0.9100 |
| O6B—N1B | 1.2300 (18) | N3A—H3AC | 0.9100 |
| O7B—N1B | 1.2224 (18) | N3A—C6A | 1.4844 (19) |
| N1B—C6B | 1.4629 (19) | C1A—H1A | 0.9500 |
| N2B—C4B | 1.4540 (18) | C2A—H2A | 0.9500 |
| C1B—C2B | 1.441 (2) | C2A—C3A | 1.352 (2) |
| C1B—C6B | 1.433 (2) | C3A—H3A | 0.9500 |
| C2B—C3B | 1.373 (2) | C4A—H4AA | 0.9900 |
| C2B—C7B | 1.498 (2) | C4A—H4AB | 0.9900 |
| C3B—H3B | 0.9500 | C4A—C5A | 1.517 (2) |
| C3B—C4B | 1.385 (2) | C5A—H5AA | 0.9900 |
| C4B—C5B | 1.381 (2) | C5A—H5AB | 0.9900 |
| C5B—H5B | 0.9500 | C5A—C6A | 1.510 (2) |
| C5B—C6B | 1.377 (2) | C6A—H6AA | 0.9900 |
| N1A—C1A | 1.320 (2) | C6A—H6AB | 0.9900 |
| C7B—O2B—H2B | 109.5 | H3AA—N3A—H3AC | 109.5 |
| O6B—N1B—C6B | 117.54 (13) | H3AB—N3A—H3AC | 109.5 |
| O7B—N1B—O6B | 123.30 (14) | C6A—N3A—H3AA | 109.5 |
| O7B—N1B—C6B | 119.17 (13) | C6A—N3A—H3AB | 109.5 |
| O4B—N2B—C4B | 118.05 (13) | C6A—N3A—H3AC | 109.5 |
| O5B—N2B—O4B | 123.43 (13) | N1A—C1A—N2A | 111.69 (13) |
| O5B—N2B—C4B | 118.52 (13) | N1A—C1A—H1A | 124.2 |
| O1B—C1B—C2B | 120.31 (13) | N2A—C1A—H1A | 124.2 |
| O1B—C1B—C6B | 124.78 (14) | N1A—C2A—H2A | 124.8 |
| C6B—C1B—C2B | 114.84 (13) | C3A—C2A—N1A | 110.33 (14) |
| C1B—C2B—C7B | 119.59 (13) | C3A—C2A—H2A | 124.8 |
| C3B—C2B—C1B | 121.69 (14) | N2A—C3A—H3A | 127.0 |
| C3B—C2B—C7B | 118.70 (13) | C2A—C3A—N2A | 105.94 (14) |
| C2B—C3B—H3B | 120.0 | C2A—C3A—H3A | 127.0 |
| C2B—C3B—C4B | 120.03 (14) | N2A—C4A—H4AA | 109.1 |
| C4B—C3B—H3B | 120.0 | N2A—C4A—H4AB | 109.1 |
| C3B—C4B—N2B | 119.02 (13) | N2A—C4A—C5A | 112.48 (12) |
| C5B—C4B—N2B | 119.37 (13) | H4AA—C4A—H4AB | 107.8 |
| C5B—C4B—C3B | 121.60 (13) | C5A—C4A—H4AA | 109.1 |
| C4B—C5B—H5B | 120.7 | C5A—C4A—H4AB | 109.1 |
| C6B—C5B—C4B | 118.69 (14) | C4A—C5A—H5AA | 109.3 |
| C6B—C5B—H5B | 120.7 | C4A—C5A—H5AB | 109.3 |
| C1B—C6B—N1B | 120.14 (13) | H5AA—C5A—H5AB | 108.0 |
| C5B—C6B—N1B | 116.69 (13) | C6A—C5A—C4A | 111.50 (12) |
| C5B—C6B—C1B | 123.12 (14) | C6A—C5A—H5AA | 109.3 |
| O2B—C7B—C2B | 116.03 (13) | C6A—C5A—H5AB | 109.3 |
| O3B—C7B—O2B | 121.99 (14) | N3A—C6A—C5A | 112.37 (12) |
| O3B—C7B—C2B | 121.96 (13) | N3A—C6A—H6AA | 109.1 |
| C1A—N1A—C2A | 105.07 (13) | N3A—C6A—H6AB | 109.1 |
| C1A—N2A—C3A | 106.97 (13) | C5A—C6A—H6AA | 109.1 |
| C1A—N2A—C4A | 125.58 (13) | C5A—C6A—H6AB | 109.1 |
| C3A—N2A—C4A | 127.43 (13) | H6AA—C6A—H6AB | 107.9 |
| H3AA—N3A—H3AB | 109.5 | ||
| O1B—C1B—C2B—C3B | −178.23 (13) | C3B—C2B—C7B—O2B | 179.26 (13) |
| O1B—C1B—C2B—C7B | 0.3 (2) | C3B—C2B—C7B—O3B | 1.0 (2) |
| O1B—C1B—C6B—N1B | −0.9 (2) | C3B—C4B—C5B—C6B | −0.6 (2) |
| O1B—C1B—C6B—C5B | 176.43 (14) | C4B—C5B—C6B—N1B | 178.87 (13) |
| O4B—N2B—C4B—C3B | 3.8 (2) | C4B—C5B—C6B—C1B | 1.5 (2) |
| O4B—N2B—C4B—C5B | −177.14 (13) | C6B—C1B—C2B—C3B | −0.9 (2) |
| O5B—N2B—C4B—C3B | −176.02 (14) | C6B—C1B—C2B—C7B | 177.58 (12) |
| O5B—N2B—C4B—C5B | 3.0 (2) | C7B—C2B—C3B—C4B | −176.73 (13) |
| O6B—N1B—C6B—C1B | 154.04 (15) | N1A—C2A—C3A—N2A | 0.13 (18) |
| O6B—N1B—C6B—C5B | −23.4 (2) | N2A—C4A—C5A—C6A | −69.71 (16) |
| O7B—N1B—C6B—C1B | −25.8 (2) | C1A—N1A—C2A—C3A | 0.02 (18) |
| O7B—N1B—C6B—C5B | 156.73 (14) | C1A—N2A—C3A—C2A | −0.23 (17) |
| N2B—C4B—C5B—C6B | −179.60 (13) | C1A—N2A—C4A—C5A | −80.85 (18) |
| C1B—C2B—C3B—C4B | 1.8 (2) | C2A—N1A—C1A—N2A | −0.17 (18) |
| C1B—C2B—C7B—O2B | 0.7 (2) | C3A—N2A—C1A—N1A | 0.26 (18) |
| C1B—C2B—C7B—O3B | −177.60 (13) | C3A—N2A—C4A—C5A | 97.42 (17) |
| C2B—C1B—C6B—N1B | −178.03 (12) | C4A—N2A—C1A—N1A | 178.83 (13) |
| C2B—C1B—C6B—C5B | −0.7 (2) | C4A—N2A—C3A—C2A | −178.77 (14) |
| C2B—C3B—C4B—N2B | 177.99 (13) | C4A—C5A—C6A—N3A | 175.16 (12) |
| C2B—C3B—C4B—C5B | −1.0 (2) |
| H··· | ||||
| O2 | 0.84 | 1.66 | 2.4484 (15) | 155 |
| N3 | 0.91 | 1.92 | 2.7987 (19) | 162 |
| N3 | 0.91 | 2.03 | 2.8153 (17) | 144 |
| N3 | 0.91 | 2.07 | 2.9546 (17) | 165 |
| C4 | 0.99 | 2.53 | 3.3572 (19) | 142 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2 | 0.84 | 1.66 | 2.4484 (15) | 155 |
| N3 | 0.91 | 1.92 | 2.7987 (19) | 162 |
| N3 | 0.91 | 2.03 | 2.8153 (17) | 144 |
| N3 | 0.91 | 2.07 | 2.9546 (17) | 165 |
| C4 | 0.99 | 2.53 | 3.3572 (19) | 142 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .