Literature DB >> 24765018

3-(1H-Imidazol-1-yl)propanaminium 2-carb-oxy-4,6-di-nitro-phenolate.

Thammarse S Yamuna1, Manpreet Kaur1, Brian J Anderson2, Jerry P Jasinski2, H S Yathirajan1.   

Abstract

In the title salt, C6H12N3 (+)·C7H3N2O7 (-), the imidazole ring is planar, with a maximum deviation of 0.0013 (14) Å for the N attached to the propanaminium group. In the anion, a single intra-molecular O-H⋯O hydrogen bond is observed. The mean planes of the nitro groups in the anion are twisted from the benzene ring mean plane making dihedral angles of 24.7 (9) and 3.9 (6)°. In the crystal, the ammonium H atoms form N-H⋯N and N-H⋯O hydrogen bonds, resulting in an infinite chain along [111]. In addition to the classical hydrogen bonds, weak C-H⋯O and π-π [centroid-centroid distance = 3.7124 (9) Å] inter-actions are also observed, which lead to the formation a three-dimensional supramolecular structure that links the chains into layers along the bc plane.

Entities:  

Year:  2014        PMID: 24765018      PMCID: PMC3998440          DOI: 10.1107/S1600536814003146

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background and the pharmacological properties of imidazole compounds, see: ten Have et al. (1997 ▶); Lombardino & Wiseman (1974 ▶); Jackson et al. (2000 ▶); Krezel (1998 ▶); Maier et al. (1989 ▶). For the related structures of substituted imidazoles, see: Dayananda et al. (2012 ▶); Hemamalini & Fun (2010 ▶); Jasinski et al. (2011 ▶); Wei et al. (2012 ▶); Yamuna et al. (2013 ▶).

Experimental

Crystal data

C6H12N3 +·C7H3N2O7 − M = 353.30 Triclinic, a = 7.0109 (4) Å b = 10.6617 (8) Å c = 10.7454 (7) Å α = 93.075 (6)° β = 95.863 (5)° γ = 104.944 (6)° V = 769.30 (9) Å3 Z = 2 Cu Kα radiation μ = 1.09 mm−1 T = 173 K 0.22 × 0.14 × 0.12 mm

Data collection

Agilent Xcalibur (Eos, Gemini) diffractometer Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012 ▶) T min = 0.925, T max = 1.000 4664 measured reflections 2953 independent reflections 2582 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.122 S = 1.04 2953 reflections 229 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2012 ▶); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814003146/fj2659sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814003146/fj2659Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814003146/fj2659Isup3.cml CCDC reference: 986378 Additional supporting information: crystallographic information; 3D view; checkCIF report
C6H12N3+·C7H3N2O7Z = 2
Mr = 353.30F(000) = 368
Triclinic, P1Dx = 1.525 Mg m3
a = 7.0109 (4) ÅCu Kα radiation, λ = 1.54184 Å
b = 10.6617 (8) ÅCell parameters from 2218 reflections
c = 10.7454 (7) Åθ = 4.2–72.3°
α = 93.075 (6)°µ = 1.09 mm1
β = 95.863 (5)°T = 173 K
γ = 104.944 (6)°Irregular, yellow
V = 769.30 (9) Å30.22 × 0.14 × 0.12 mm
Agilent Xcalibur (Eos, Gemini) diffractometer2953 independent reflections
Radiation source: Enhance (Cu) X-ray Source2582 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
Detector resolution: 16.0416 pixels mm-1θmax = 72.5°, θmin = 4.2°
ω scansh = −8→5
Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012)k = −12→13
Tmin = 0.925, Tmax = 1.000l = −13→13
4664 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.042w = 1/[σ2(Fo2) + (0.0682P)2 + 0.1101P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.122(Δ/σ)max < 0.001
S = 1.04Δρmax = 0.25 e Å3
2953 reflectionsΔρmin = −0.25 e Å3
229 parametersExtinction correction: SHELXL2012 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0087 (12)
Primary atom site location: structure-invariant direct methods
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O1B−0.19166 (16)0.67530 (11)0.52669 (10)0.0288 (3)
O2B−0.38294 (16)0.47146 (11)0.40815 (11)0.0309 (3)
H2B−0.34930.54020.45630.046*
O3B−0.25490 (16)0.37708 (11)0.26154 (11)0.0308 (3)
O4B0.41267 (18)0.58644 (12)0.16868 (12)0.0360 (3)
O5B0.59770 (17)0.75622 (12)0.28233 (13)0.0378 (3)
O6B0.34447 (19)0.93705 (13)0.62652 (14)0.0466 (4)
O7B0.02866 (19)0.91669 (12)0.61489 (13)0.0407 (3)
N1B0.1720 (2)0.88464 (13)0.58134 (13)0.0293 (3)
N2B0.43937 (19)0.67328 (13)0.25380 (13)0.0277 (3)
C1B−0.0459 (2)0.68012 (14)0.46271 (13)0.0220 (3)
C2B−0.0571 (2)0.57869 (14)0.36592 (13)0.0216 (3)
C3B0.0986 (2)0.57928 (14)0.29803 (13)0.0224 (3)
H3B0.08600.51260.23310.027*
C4B0.2742 (2)0.67709 (15)0.32417 (14)0.0235 (3)
C5B0.2969 (2)0.77675 (14)0.41652 (14)0.0242 (3)
H5B0.41870.84280.43390.029*
C6B0.1396 (2)0.77858 (15)0.48287 (14)0.0240 (3)
C7B−0.2410 (2)0.46764 (15)0.34003 (14)0.0240 (3)
N1A−0.2236 (2)0.05132 (13)−0.17302 (13)0.0301 (3)
N2A−0.01482 (18)0.22563 (12)−0.06974 (12)0.0236 (3)
N3A0.34673 (18)0.20535 (12)0.28180 (12)0.0247 (3)
H3AA0.32730.11930.25840.030*
H3AB0.30970.21460.35980.030*
H3AC0.47760.24740.28290.030*
C1A−0.0393 (2)0.12597 (15)−0.15759 (15)0.0267 (3)
H1A0.06350.1112−0.20290.032*
C2A−0.3211 (2)0.10673 (16)−0.08994 (16)0.0311 (4)
H2A−0.45750.0745−0.07930.037*
C3A−0.1954 (2)0.21366 (16)−0.02562 (15)0.0290 (4)
H3A−0.22570.26920.03720.035*
C4A0.1721 (2)0.32486 (15)−0.02842 (14)0.0265 (3)
H4AA0.14190.40320.00940.032*
H4AB0.24230.3502−0.10230.032*
C5A0.3076 (2)0.27761 (16)0.06655 (14)0.0270 (3)
H5AA0.32360.19290.03350.032*
H5AB0.44050.34070.07920.032*
C6A0.2253 (2)0.26209 (16)0.19094 (14)0.0276 (3)
H6AA0.22000.34830.22710.033*
H6AB0.08770.20510.17690.033*
U11U22U33U12U13U23
O1B0.0263 (6)0.0300 (6)0.0273 (6)0.0012 (5)0.0097 (4)−0.0047 (4)
O2B0.0247 (6)0.0304 (6)0.0321 (6)−0.0027 (4)0.0082 (5)−0.0070 (5)
O3B0.0276 (6)0.0282 (6)0.0318 (6)0.0003 (5)0.0045 (5)−0.0081 (5)
O4B0.0360 (6)0.0319 (6)0.0414 (7)0.0081 (5)0.0168 (5)−0.0040 (5)
O5B0.0229 (6)0.0376 (7)0.0501 (8)0.0011 (5)0.0111 (5)0.0012 (6)
O6B0.0351 (7)0.0402 (8)0.0540 (8)−0.0004 (6)−0.0049 (6)−0.0192 (6)
O7B0.0393 (7)0.0324 (7)0.0472 (8)0.0026 (5)0.0160 (6)−0.0121 (6)
N1B0.0319 (7)0.0233 (7)0.0293 (7)0.0012 (5)0.0057 (6)−0.0025 (5)
N2B0.0253 (7)0.0258 (7)0.0339 (7)0.0072 (5)0.0088 (5)0.0060 (5)
C1B0.0230 (7)0.0232 (7)0.0194 (7)0.0049 (6)0.0033 (5)0.0023 (6)
C2B0.0215 (7)0.0215 (7)0.0207 (7)0.0035 (6)0.0021 (5)0.0028 (6)
C3B0.0255 (7)0.0216 (7)0.0210 (7)0.0072 (6)0.0043 (6)0.0016 (5)
C4B0.0220 (7)0.0248 (7)0.0258 (7)0.0076 (6)0.0066 (6)0.0059 (6)
C5B0.0215 (7)0.0221 (7)0.0268 (7)0.0017 (6)0.0023 (6)0.0051 (6)
C6B0.0270 (8)0.0208 (7)0.0226 (7)0.0041 (6)0.0017 (6)0.0002 (6)
C7B0.0240 (7)0.0253 (7)0.0213 (7)0.0047 (6)0.0016 (5)0.0001 (6)
N1A0.0291 (7)0.0246 (7)0.0347 (7)0.0050 (5)0.0016 (6)−0.0005 (6)
N2A0.0241 (6)0.0230 (6)0.0229 (6)0.0049 (5)0.0032 (5)0.0002 (5)
N3A0.0258 (6)0.0224 (6)0.0241 (6)0.0041 (5)0.0025 (5)−0.0028 (5)
C1A0.0273 (8)0.0256 (8)0.0277 (8)0.0078 (6)0.0050 (6)−0.0019 (6)
C2A0.0262 (8)0.0311 (8)0.0354 (9)0.0045 (6)0.0070 (6)0.0059 (7)
C3A0.0293 (8)0.0308 (8)0.0286 (8)0.0093 (6)0.0093 (6)0.0013 (6)
C4A0.0268 (8)0.0245 (7)0.0248 (7)0.0007 (6)0.0048 (6)−0.0001 (6)
C5A0.0237 (7)0.0293 (8)0.0258 (8)0.0029 (6)0.0054 (6)−0.0020 (6)
C6A0.0301 (8)0.0301 (8)0.0256 (8)0.0124 (6)0.0060 (6)0.0017 (6)
O1B—C1B1.2803 (18)N1A—C2A1.375 (2)
O2B—H2B0.8400N2A—C1A1.3472 (19)
O2B—C7B1.3019 (18)N2A—C3A1.3748 (19)
O3B—C7B1.2249 (18)N2A—C4A1.4660 (19)
O4B—N2B1.2303 (18)N3A—H3AA0.9100
O5B—N2B1.2261 (18)N3A—H3AB0.9100
O6B—N1B1.2300 (18)N3A—H3AC0.9100
O7B—N1B1.2224 (18)N3A—C6A1.4844 (19)
N1B—C6B1.4629 (19)C1A—H1A0.9500
N2B—C4B1.4540 (18)C2A—H2A0.9500
C1B—C2B1.441 (2)C2A—C3A1.352 (2)
C1B—C6B1.433 (2)C3A—H3A0.9500
C2B—C3B1.373 (2)C4A—H4AA0.9900
C2B—C7B1.498 (2)C4A—H4AB0.9900
C3B—H3B0.9500C4A—C5A1.517 (2)
C3B—C4B1.385 (2)C5A—H5AA0.9900
C4B—C5B1.381 (2)C5A—H5AB0.9900
C5B—H5B0.9500C5A—C6A1.510 (2)
C5B—C6B1.377 (2)C6A—H6AA0.9900
N1A—C1A1.320 (2)C6A—H6AB0.9900
C7B—O2B—H2B109.5H3AA—N3A—H3AC109.5
O6B—N1B—C6B117.54 (13)H3AB—N3A—H3AC109.5
O7B—N1B—O6B123.30 (14)C6A—N3A—H3AA109.5
O7B—N1B—C6B119.17 (13)C6A—N3A—H3AB109.5
O4B—N2B—C4B118.05 (13)C6A—N3A—H3AC109.5
O5B—N2B—O4B123.43 (13)N1A—C1A—N2A111.69 (13)
O5B—N2B—C4B118.52 (13)N1A—C1A—H1A124.2
O1B—C1B—C2B120.31 (13)N2A—C1A—H1A124.2
O1B—C1B—C6B124.78 (14)N1A—C2A—H2A124.8
C6B—C1B—C2B114.84 (13)C3A—C2A—N1A110.33 (14)
C1B—C2B—C7B119.59 (13)C3A—C2A—H2A124.8
C3B—C2B—C1B121.69 (14)N2A—C3A—H3A127.0
C3B—C2B—C7B118.70 (13)C2A—C3A—N2A105.94 (14)
C2B—C3B—H3B120.0C2A—C3A—H3A127.0
C2B—C3B—C4B120.03 (14)N2A—C4A—H4AA109.1
C4B—C3B—H3B120.0N2A—C4A—H4AB109.1
C3B—C4B—N2B119.02 (13)N2A—C4A—C5A112.48 (12)
C5B—C4B—N2B119.37 (13)H4AA—C4A—H4AB107.8
C5B—C4B—C3B121.60 (13)C5A—C4A—H4AA109.1
C4B—C5B—H5B120.7C5A—C4A—H4AB109.1
C6B—C5B—C4B118.69 (14)C4A—C5A—H5AA109.3
C6B—C5B—H5B120.7C4A—C5A—H5AB109.3
C1B—C6B—N1B120.14 (13)H5AA—C5A—H5AB108.0
C5B—C6B—N1B116.69 (13)C6A—C5A—C4A111.50 (12)
C5B—C6B—C1B123.12 (14)C6A—C5A—H5AA109.3
O2B—C7B—C2B116.03 (13)C6A—C5A—H5AB109.3
O3B—C7B—O2B121.99 (14)N3A—C6A—C5A112.37 (12)
O3B—C7B—C2B121.96 (13)N3A—C6A—H6AA109.1
C1A—N1A—C2A105.07 (13)N3A—C6A—H6AB109.1
C1A—N2A—C3A106.97 (13)C5A—C6A—H6AA109.1
C1A—N2A—C4A125.58 (13)C5A—C6A—H6AB109.1
C3A—N2A—C4A127.43 (13)H6AA—C6A—H6AB107.9
H3AA—N3A—H3AB109.5
O1B—C1B—C2B—C3B−178.23 (13)C3B—C2B—C7B—O2B179.26 (13)
O1B—C1B—C2B—C7B0.3 (2)C3B—C2B—C7B—O3B1.0 (2)
O1B—C1B—C6B—N1B−0.9 (2)C3B—C4B—C5B—C6B−0.6 (2)
O1B—C1B—C6B—C5B176.43 (14)C4B—C5B—C6B—N1B178.87 (13)
O4B—N2B—C4B—C3B3.8 (2)C4B—C5B—C6B—C1B1.5 (2)
O4B—N2B—C4B—C5B−177.14 (13)C6B—C1B—C2B—C3B−0.9 (2)
O5B—N2B—C4B—C3B−176.02 (14)C6B—C1B—C2B—C7B177.58 (12)
O5B—N2B—C4B—C5B3.0 (2)C7B—C2B—C3B—C4B−176.73 (13)
O6B—N1B—C6B—C1B154.04 (15)N1A—C2A—C3A—N2A0.13 (18)
O6B—N1B—C6B—C5B−23.4 (2)N2A—C4A—C5A—C6A−69.71 (16)
O7B—N1B—C6B—C1B−25.8 (2)C1A—N1A—C2A—C3A0.02 (18)
O7B—N1B—C6B—C5B156.73 (14)C1A—N2A—C3A—C2A−0.23 (17)
N2B—C4B—C5B—C6B−179.60 (13)C1A—N2A—C4A—C5A−80.85 (18)
C1B—C2B—C3B—C4B1.8 (2)C2A—N1A—C1A—N2A−0.17 (18)
C1B—C2B—C7B—O2B0.7 (2)C3A—N2A—C1A—N1A0.26 (18)
C1B—C2B—C7B—O3B−177.60 (13)C3A—N2A—C4A—C5A97.42 (17)
C2B—C1B—C6B—N1B−178.03 (12)C4A—N2A—C1A—N1A178.83 (13)
C2B—C1B—C6B—C5B−0.7 (2)C4A—N2A—C3A—C2A−178.77 (14)
C2B—C3B—C4B—N2B177.99 (13)C4A—C5A—C6A—N3A175.16 (12)
C2B—C3B—C4B—C5B−1.0 (2)
D—H···AD—HH···AD···AD—H···A
O2B—H2B···O1B0.841.662.4484 (15)155
N3A—H3AA···N1Ai0.911.922.7987 (19)162
N3A—H3AB···O1Bii0.912.032.8153 (17)144
N3A—H3AC···O3Biii0.912.072.9546 (17)165
C4A—H4AB···O4Biv0.992.533.3572 (19)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2B—H2B⋯O1B 0.841.662.4484 (15)155
N3A—H3AA⋯N1A i 0.911.922.7987 (19)162
N3A—H3AB⋯O1B ii 0.912.032.8153 (17)144
N3A—H3AC⋯O3B iii 0.912.072.9546 (17)165
C4A—H4AB⋯O4B iv 0.992.533.3572 (19)142

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  9 in total

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Authors:  George M Sheldrick
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2.  Preparation and antiinflammatory activity of some nonacidic trisubstituted imidazoles.

Authors:  J G Lombardino; E H Wiseman
Journal:  J Med Chem       Date:  1974-11       Impact factor: 7.446

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Authors:  C J Jackson; D C Lamb; D E Kelly; S L Kelly
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4.  New derivatives of imidazole as potential anticancer agents.

Authors:  I Krezel
Journal:  Farmaco       Date:  1998-05-30

5.  2-Amino-5-methyl-pyridinium 2-hydr-oxy-3,5-dinitro-benzoate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-28

6.  Enrofloxacinium picrate.

Authors:  Jerry P Jasinski; Ray J Butcher; M S Siddegowda; H S Yathirajan; B P Siddaraju
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-22

7.  Cinnarizinium 3,5-dinitro-salicylate.

Authors:  Alaloor S Dayananda; Hemmige S Yathirajan; Thomas Gerber; Eric Hosten; Richard Betz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-24

8.  3,5-Dimethyl-pyrazolium 3,5-dinitro-salicylate.

Authors:  Shuaishuai Wei; Shouwen Jin; Zhaofeng Hu; Yong Zhou; Yingping Zhou
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-13

9.  3-(1H-Imidazol-1-yl)propanaminium picrate.

Authors:  T S Yamuna; Jerry P Jasinski; Courtney E Duff; H S Yathirajan; Manpreet Kaur
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  9 in total

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