Literature DB >> 21579230

2-Amino-5-methyl-pyridinium 2-hydr-oxy-3,5-dinitro-benzoate.

Madhukar Hemamalini1, Hoong-Kun Fun.   

Abstract

In the title mol-ecular salt, C(6)H(9)N(2) (+)·C(7)H(3)N(2)O(7) (-), the 2-amino-5-methyl-pyridinium cation is essentially planar, with a maximum deviation of 0.023 (1) Å. There is an intra-molecular O-H⋯O hydrogen bond in the 3,5-dinitro-salicylate anion, which generates an S(6) ring motif. In the crystal, the protonated N atom and the 2-amino group are hydrogen bonded to the carboxyl-ate O atoms via a pair of N-H⋯O hydrogen bonds, forming an R(2) (2)(8) ring motif. Weak inter-molecular C-H⋯O inter-actions help to further stabilize the crystal structure.

Entities:  

Year:  2010        PMID: 21579230      PMCID: PMC2979276          DOI: 10.1107/S1600536810014480

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemistry of substituted pyridines, see: Pozharski et al. (1997 ▶); Katritzky et al. (1996 ▶); Nahringbauer & Kvick (1977 ▶). For 3,5-dinitro­salicylic acid, see: Hindawey et al. (1980 ▶); Issa et al. (1981 ▶). For details of hydrogen bonding, see: Jeffrey & Saenger (1991 ▶); Jeffrey (1997 ▶); Scheiner (1997 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C6H9N2C7H3N2O7 − M = 336.27 Triclinic, a = 5.8673 (7) Å b = 8.0991 (9) Å c = 15.2437 (17) Å α = 86.844 (3)° β = 84.252 (3)° γ = 81.209 (3)° V = 711.69 (14) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 100 K 0.29 × 0.14 × 0.08 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.963, T max = 0.990 12709 measured reflections 4947 independent reflections 3922 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.150 S = 1.08 4947 reflections 219 parameters H-atom parameters constrained Δρmax = 0.51 e Å−3 Δρmin = −0.46 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810014480/hb5405sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810014480/hb5405Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C7H3N2O7Z = 2
Mr = 336.27F(000) = 348
Triclinic, P1Dx = 1.569 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.8673 (7) ÅCell parameters from 5139 reflections
b = 8.0991 (9) Åθ = 2.7–32.4°
c = 15.2437 (17) ŵ = 0.13 mm1
α = 86.844 (3)°T = 100 K
β = 84.252 (3)°Block, yellow
γ = 81.209 (3)°0.29 × 0.14 × 0.08 mm
V = 711.69 (14) Å3
Bruker APEX DUO CCD area-detector diffractometer4947 independent reflections
Radiation source: fine-focus sealed tube3922 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 32.5°, θmin = 1.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −8→8
Tmin = 0.963, Tmax = 0.990k = −12→11
12709 measured reflectionsl = −22→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.150H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0741P)2 + 0.3055P] where P = (Fo2 + 2Fc2)/3
4947 reflections(Δ/σ)max < 0.001
219 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = −0.46 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.50349 (18)0.28625 (13)0.24313 (7)0.0151 (2)
H10.48770.27680.18820.018*
N20.82364 (19)0.41676 (14)0.19955 (7)0.0176 (2)
H2A0.80600.40150.14540.021*
H2B0.93520.46620.21210.021*
C10.6777 (2)0.36374 (15)0.26413 (8)0.0146 (2)
C20.3509 (2)0.22205 (16)0.30452 (8)0.0162 (2)
H20.23530.16920.28590.019*
C30.3654 (2)0.23421 (16)0.39271 (8)0.0177 (2)
C40.5424 (2)0.31915 (17)0.41660 (8)0.0196 (2)
H40.55530.33180.47610.023*
C50.6949 (2)0.38321 (16)0.35500 (8)0.0180 (2)
H50.80880.43910.37260.022*
C60.2014 (2)0.1628 (2)0.46135 (9)0.0252 (3)
H6A0.09300.11150.43290.038*
H6B0.11920.25080.49710.038*
H6C0.28730.08060.49800.038*
O10.17251 (16)0.61810 (13)0.14298 (6)0.01924 (19)
H1A0.16380.61190.08990.029*
O20.10528 (18)0.60967 (13)0.31694 (7)0.0243 (2)
O30.28454 (18)0.76459 (15)0.38862 (6)0.0270 (2)
O40.93341 (17)0.99542 (13)0.26211 (7)0.0237 (2)
O51.00019 (18)1.02494 (14)0.11971 (8)0.0274 (2)
O60.55546 (18)0.76372 (13)−0.07527 (6)0.0222 (2)
O70.26539 (17)0.63243 (12)−0.01529 (6)0.01923 (19)
N30.25086 (18)0.70325 (14)0.31952 (7)0.0166 (2)
N40.89119 (18)0.97295 (13)0.18590 (8)0.0181 (2)
C70.3389 (2)0.70035 (15)0.15497 (8)0.0136 (2)
C80.3891 (2)0.74498 (15)0.23904 (8)0.0141 (2)
C90.5696 (2)0.83248 (15)0.24908 (8)0.0152 (2)
H90.60040.85880.30490.018*
C100.7029 (2)0.87992 (15)0.17497 (8)0.0148 (2)
C110.6613 (2)0.84379 (15)0.09005 (8)0.0154 (2)
H110.75170.87880.04090.018*
C120.4831 (2)0.75506 (14)0.08054 (7)0.0136 (2)
C130.4365 (2)0.71642 (15)−0.01015 (8)0.0160 (2)
U11U22U33U12U13U23
N10.0161 (4)0.0167 (5)0.0128 (4)−0.0032 (4)−0.0022 (3)−0.0010 (3)
N20.0184 (5)0.0215 (5)0.0143 (4)−0.0086 (4)−0.0004 (3)−0.0001 (4)
C10.0161 (5)0.0138 (5)0.0138 (5)−0.0018 (4)−0.0014 (4)−0.0003 (4)
C20.0144 (5)0.0164 (5)0.0180 (5)−0.0032 (4)−0.0014 (4)−0.0009 (4)
C30.0183 (5)0.0184 (5)0.0156 (5)−0.0022 (4)0.0005 (4)0.0009 (4)
C40.0238 (6)0.0234 (6)0.0123 (5)−0.0048 (5)−0.0033 (4)−0.0007 (4)
C50.0200 (5)0.0205 (6)0.0149 (5)−0.0058 (5)−0.0039 (4)−0.0005 (4)
C60.0225 (6)0.0321 (7)0.0206 (6)−0.0078 (5)0.0030 (5)0.0045 (5)
O10.0192 (4)0.0257 (5)0.0154 (4)−0.0105 (4)−0.0028 (3)−0.0014 (3)
O20.0271 (5)0.0276 (5)0.0202 (5)−0.0141 (4)0.0037 (4)−0.0011 (4)
O30.0285 (5)0.0422 (6)0.0122 (4)−0.0098 (5)−0.0019 (4)−0.0062 (4)
O40.0210 (4)0.0230 (5)0.0296 (5)−0.0032 (4)−0.0110 (4)−0.0068 (4)
O50.0235 (5)0.0269 (5)0.0337 (6)−0.0121 (4)−0.0010 (4)0.0021 (4)
O60.0286 (5)0.0266 (5)0.0127 (4)−0.0099 (4)0.0000 (3)−0.0007 (3)
O70.0215 (4)0.0242 (5)0.0142 (4)−0.0094 (4)−0.0031 (3)−0.0008 (3)
N30.0163 (4)0.0197 (5)0.0134 (4)−0.0017 (4)−0.0011 (3)−0.0005 (4)
N40.0144 (4)0.0149 (5)0.0261 (5)−0.0027 (4)−0.0048 (4)−0.0025 (4)
C70.0133 (5)0.0139 (5)0.0135 (5)−0.0018 (4)−0.0015 (4)−0.0009 (4)
C80.0137 (5)0.0158 (5)0.0128 (5)−0.0021 (4)−0.0006 (4)−0.0009 (4)
C90.0145 (5)0.0151 (5)0.0162 (5)−0.0007 (4)−0.0038 (4)−0.0030 (4)
C100.0125 (5)0.0132 (5)0.0195 (5)−0.0031 (4)−0.0028 (4)−0.0017 (4)
C110.0148 (5)0.0140 (5)0.0171 (5)−0.0019 (4)−0.0007 (4)−0.0010 (4)
C120.0147 (5)0.0144 (5)0.0119 (5)−0.0029 (4)−0.0014 (4)−0.0008 (4)
C130.0187 (5)0.0162 (5)0.0136 (5)−0.0028 (4)−0.0028 (4)−0.0014 (4)
N1—C11.3509 (15)O1—H1A0.8200
N1—C21.3668 (15)O2—N31.2302 (14)
N1—H10.8600O3—N31.2348 (14)
N2—C11.3355 (15)O4—N41.2404 (15)
N2—H2A0.8600O5—N41.2291 (15)
N2—H2B0.8600O6—C131.2331 (15)
C1—C51.4181 (16)O7—C131.3067 (15)
C2—C31.3652 (17)N3—C81.4546 (15)
C2—H20.9300N4—C101.4563 (15)
C3—C41.4164 (18)C7—C81.4208 (16)
C3—C61.5019 (18)C7—C121.4372 (16)
C4—C51.3681 (18)C8—C91.3861 (16)
C4—H40.9300C9—C101.3794 (17)
C5—H50.9300C9—H90.9300
C6—H6A0.9600C10—C111.3956 (17)
C6—H6B0.9600C11—C121.3793 (16)
C6—H6C0.9600C11—H110.9300
O1—C71.2957 (14)C12—C131.4943 (16)
C1—N1—C2123.48 (10)O2—N3—O3122.24 (11)
C1—N1—H1118.2O2—N3—C8119.70 (10)
C2—N1—H1118.3O3—N3—C8118.06 (11)
C1—N2—H2A120.0O5—N4—O4123.31 (11)
C1—N2—H2B120.0O5—N4—C10118.76 (11)
H2A—N2—H2B120.0O4—N4—C10117.93 (11)
N2—C1—N1119.16 (11)O1—C7—C8123.94 (11)
N2—C1—C5123.65 (11)O1—C7—C12120.07 (10)
N1—C1—C5117.18 (11)C8—C7—C12115.98 (10)
C3—C2—N1121.14 (11)C9—C8—C7122.15 (11)
C3—C2—H2119.4C9—C8—N3116.22 (10)
N1—C2—H2119.4C7—C8—N3121.63 (10)
C2—C3—C4116.59 (11)C10—C9—C8118.97 (11)
C2—C3—C6122.06 (12)C10—C9—H9120.5
C4—C3—C6121.34 (12)C8—C9—H9120.5
C5—C4—C3122.13 (11)C9—C10—C11122.23 (11)
C5—C4—H4118.9C9—C10—N4118.70 (11)
C3—C4—H4118.9C11—C10—N4119.06 (11)
C4—C5—C1119.43 (11)C12—C11—C10118.54 (11)
C4—C5—H5120.3C12—C11—H11120.7
C1—C5—H5120.3C10—C11—H11120.7
C3—C6—H6A109.5C11—C12—C7122.12 (10)
C3—C6—H6B109.5C11—C12—C13118.93 (10)
H6A—C6—H6B109.5C7—C12—C13118.95 (10)
C3—C6—H6C109.5O6—C13—O7123.31 (11)
H6A—C6—H6C109.5O6—C13—C12120.35 (11)
H6B—C6—H6C109.5O7—C13—C12116.34 (10)
C7—O1—H1A109.5
C2—N1—C1—N2177.44 (11)N3—C8—C9—C10−178.15 (10)
C2—N1—C1—C5−2.27 (17)C8—C9—C10—C110.44 (18)
C1—N1—C2—C30.56 (19)C8—C9—C10—N4179.53 (11)
N1—C2—C3—C41.24 (18)O5—N4—C10—C9−175.21 (11)
N1—C2—C3—C6−179.26 (12)O4—N4—C10—C94.88 (17)
C2—C3—C4—C5−1.29 (19)O5—N4—C10—C113.91 (17)
C6—C3—C4—C5179.21 (13)O4—N4—C10—C11−176.00 (11)
C3—C4—C5—C1−0.4 (2)C9—C10—C11—C12−1.15 (18)
N2—C1—C5—C4−177.56 (12)N4—C10—C11—C12179.76 (11)
N1—C1—C5—C42.14 (18)C10—C11—C12—C70.51 (18)
O1—C7—C8—C9179.70 (12)C10—C11—C12—C13179.74 (11)
C12—C7—C8—C9−1.52 (17)O1—C7—C12—C11179.60 (11)
O1—C7—C8—N3−1.24 (19)C8—C7—C12—C110.77 (17)
C12—C7—C8—N3177.54 (10)O1—C7—C12—C130.37 (17)
O2—N3—C8—C9−171.71 (11)C8—C7—C12—C13−178.46 (10)
O3—N3—C8—C98.51 (17)C11—C12—C13—O6−0.21 (18)
O2—N3—C8—C79.17 (18)C7—C12—C13—O6179.05 (11)
O3—N3—C8—C7−170.60 (11)C11—C12—C13—O7−179.85 (11)
C7—C8—C9—C100.96 (18)C7—C12—C13—O7−0.59 (16)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O70.821.662.4200 (13)152
N1—H1···O6i0.861.822.6768 (14)174
N2—H2A···O7i0.862.112.9668 (15)176
N2—H2B···O1ii0.862.162.8468 (15)137
N2—H2B···O2ii0.862.403.1723 (16)149
C2—H2···O4iii0.932.493.4073 (16)169
C4—H4···O3iv0.932.393.2371 (16)151
C5—H5···O2ii0.932.443.2328 (17)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O70.821.662.4200 (13)152
N1—H1⋯O6i0.861.822.6768 (14)174
N2—H2A⋯O7i0.862.112.9668 (15)176
N2—H2B⋯O1ii0.862.162.8468 (15)137
N2—H2B⋯O2ii0.862.403.1723 (16)149
C2—H2⋯O4iii0.932.493.4073 (16)169
C4—H4⋯O3iv0.932.393.2371 (16)151
C5—H5⋯O2ii0.932.443.2328 (17)143

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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