Literature DB >> 24764970

(E)-13-(2-Bromo-phen-yl)micheliolide.

Narsimha Reddy Penthala1, Shobanbabu Bommagani1, Venumadhav Janganati1, Sean Parkin2, Peter A Crooks1.   

Abstract

The title compound, C21H23BrO3 [systematic name: (3E,3aS,6Z,9R,9aS,9bS)-3-(2-bromo-benzyl-idene)-9-hy-droxy-6,9-dimethyl-3,3a,4,5,7,8,9,9a-octa-hydro-azuleno[4,5-b]furan-2(9bH)-one] was prepared by the reaction of 1-bromo-2-iodo-benzene with micheliolide [systematic name: (3aS,R,9aS,9bS,Z)-9-hy-droxy-6,9-dimethyl-3-methyl-ene-3,3a,4,5,7,8,9,9a-octa-hydro-azuleno[4,5-b]furan-2(9bH)-one] under Heck reaction conditions. The title compound exhibits intra-molecular O-H⋯O hydrogen bonding between the hy-droxy group and the lactone ring O atom, forming a ring of graph-set motif S(6). The 2-bromo-phenyl group is trans to the lactone ring, indicating that this is the E isomer (geometry of the exocyclic C=C bond). The dihedral angle between the benzene ring of the 2-bromo-phenyl moiety and the mean plane of the lactone ring is 51.68 (7)°.

Entities:  

Year:  2014        PMID: 24764970      PMCID: PMC3998478          DOI: 10.1107/S1600536814002177

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of micheliolide Michael addition compounds, see: Rodriguez et al. (1976 ▶); Sethi et al. (1984 ▶); Neelakantan et al. (2009 ▶); Zhang et al. (2012 ▶). For details of the Heck chemistry, see: Han et al. (2009 ▶). For the crystal structure of micheliolide, see: Acosta et al. (1991 ▶). For the crystal structure of a similar compound, see: Penthala et al. (2013 ▶).

Experimental

Crystal data

C21H23BrO3 M = 403.30 Orthorhombic, a = 7.1617 (1) Å b = 13.1615 (2) Å c = 19.2306 (3) Å V = 1812.65 (5) Å3 Z = 4 Mo Kα radiation μ = 2.29 mm−1 T = 90 K 0.20 × 0.20 × 0.15 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.550, T max = 0.714 48139 measured reflections 4148 independent reflections 3871 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.064 S = 1.04 4148 reflections 231 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.34 e Å−3 Absolute structure: Flack parameter determined using 1569 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▶) Absolute structure parameter: 0.032 (3) Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 2006 ▶); data reduction: DENZO-SMN (Otwinowski & Minor, 2006 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008b ▶); molecular graphics: XP in (Sheldrick, 2008b ▶); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008b ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814002177/sj5372sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814002177/sj5372Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814002177/sj5372Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C21H23BrO3Dx = 1.478 Mg m3
Mr = 403.30Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 127083 reflections
a = 7.1617 (1) Åθ = 1.0–27.5°
b = 13.1615 (2) ŵ = 2.29 mm1
c = 19.2306 (3) ÅT = 90 K
V = 1812.65 (5) Å3Block, cut from needle, colourless
Z = 40.20 × 0.20 × 0.15 mm
F(000) = 832
Nonius KappaCCD diffractometer4148 independent reflections
Radiation source: fine-focus sealed-tube3871 reflections with I > 2σ(I)
Detector resolution: 9.1 pixels mm-1Rint = 0.047
φ and ω scans at fixed χ = 55°θmax = 27.5°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −9→9
Tmin = 0.550, Tmax = 0.714k = −17→17
48139 measured reflectionsl = −24→24
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.025H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.064w = 1/[σ2(Fo2) + (0.0352P)2 + 0.4253P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
4148 reflectionsΔρmax = 0.41 e Å3
231 parametersΔρmin = −0.34 e Å3
0 restraintsAbsolute structure: Flack parameter determined using 1569 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.032 (3)
Experimental. The crystal was mounted with polyisobutene oil on the tip of a fine glass fibre, fastened in a copper mounting pin with electrical solder. It was placed directly into the cold stream of a liquid nitrogen based cryostat.Diffraction data were collected with the crystal at 90 K, which is standard practice in this laboratory for the majority of flash-cooled crystals.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Br10.79983 (4)−0.11654 (2)0.35920 (2)0.03215 (9)
O10.7715 (3)0.26157 (14)0.45446 (10)0.0248 (4)
O20.5251 (3)0.34175 (14)0.40803 (9)0.0215 (4)
O30.3499 (3)0.53339 (15)0.43985 (11)0.0285 (5)
H30.434 (6)0.498 (3)0.444 (2)0.043*
C10.0338 (3)0.3743 (2)0.33548 (13)0.0202 (5)
C2−0.0575 (4)0.4794 (2)0.33076 (16)0.0252 (6)
H2A−0.05530.50460.28230.030*
H2B−0.18870.47650.34680.030*
C30.0577 (4)0.5486 (2)0.37792 (14)0.0243 (6)
H3A0.06330.61840.35890.029*
H3B0.00370.55120.42530.029*
C40.2513 (4)0.50008 (19)0.37900 (13)0.0208 (5)
C50.2022 (3)0.38520 (18)0.38337 (12)0.0185 (4)
H50.16020.37040.43190.022*
C60.3602 (3)0.31433 (18)0.36651 (14)0.0192 (5)
H60.39170.32110.31610.023*
C70.3212 (4)0.20208 (18)0.38266 (13)0.0198 (5)
H70.23140.19840.42240.024*
C80.2325 (4)0.1511 (2)0.31966 (14)0.0237 (6)
H8A0.24080.07640.32510.028*
H8B0.30310.17020.27740.028*
C90.0275 (4)0.1814 (2)0.31045 (16)0.0259 (6)
H9A−0.04130.15380.35090.031*
H9B−0.01930.14490.26900.031*
C10−0.0321 (4)0.2927 (2)0.30252 (14)0.0212 (5)
C110.5102 (4)0.1654 (2)0.40740 (13)0.0201 (5)
C120.6223 (4)0.2566 (2)0.42595 (13)0.0204 (5)
C130.5791 (4)0.07309 (19)0.42009 (13)0.0210 (5)
H130.70920.06970.42950.025*
C14−0.2025 (4)0.3016 (2)0.25629 (14)0.0257 (5)
H14A−0.24710.37200.25650.039*
H14B−0.30110.25670.27380.039*
H14C−0.16950.28170.20870.039*
C150.3630 (4)0.5270 (2)0.31404 (15)0.0255 (6)
H15A0.37760.60100.31110.038*
H15B0.29690.50240.27270.038*
H15C0.48640.49510.31650.038*
C160.4774 (4)−0.0247 (2)0.42131 (13)0.0204 (5)
C170.5616 (4)−0.1163 (2)0.40254 (13)0.0220 (5)
C180.4756 (4)−0.2095 (2)0.41364 (14)0.0252 (6)
H180.5356−0.27070.39990.030*
C190.3015 (5)−0.21243 (19)0.44500 (14)0.0261 (6)
H190.2434−0.27590.45420.031*
C200.2116 (4)−0.1224 (2)0.46308 (13)0.0251 (5)
H200.0909−0.12440.48350.030*
C210.2988 (4)−0.02945 (19)0.45117 (13)0.0228 (5)
H210.23640.03170.46340.027*
U11U22U33U12U13U23
Br10.03169 (14)0.02821 (14)0.03656 (15)0.00934 (12)0.00802 (12)0.00322 (13)
O10.0264 (10)0.0225 (9)0.0254 (9)−0.0003 (8)−0.0026 (8)0.0020 (8)
O20.0249 (9)0.0140 (8)0.0256 (9)−0.0014 (7)−0.0045 (7)0.0001 (7)
O30.0383 (12)0.0152 (9)0.0319 (11)0.0016 (8)−0.0109 (9)−0.0040 (8)
C10.0231 (11)0.0163 (12)0.0212 (11)−0.0009 (10)0.0027 (9)0.0025 (10)
C20.0257 (13)0.0145 (12)0.0355 (15)0.0004 (10)−0.0034 (11)0.0028 (11)
C30.0301 (13)0.0148 (12)0.0281 (14)0.0020 (10)0.0017 (11)0.0004 (10)
C40.0289 (12)0.0112 (11)0.0224 (13)−0.0009 (9)−0.0046 (10)−0.0001 (9)
C50.0231 (11)0.0120 (10)0.0204 (10)−0.0016 (12)0.0008 (9)0.0005 (9)
C60.0242 (11)0.0148 (11)0.0185 (12)−0.0012 (9)−0.0028 (10)−0.0006 (10)
C70.0258 (12)0.0119 (11)0.0218 (12)−0.0010 (10)0.0007 (10)−0.0009 (9)
C80.0304 (14)0.0162 (12)0.0246 (13)0.0016 (10)−0.0023 (11)−0.0038 (10)
C90.0290 (13)0.0172 (13)0.0316 (14)0.0001 (11)−0.0044 (11)−0.0055 (11)
C100.0229 (12)0.0187 (13)0.0221 (13)0.0003 (10)0.0010 (10)0.0000 (10)
C110.0261 (13)0.0175 (13)0.0168 (12)0.0002 (10)0.0008 (10)0.0004 (10)
C120.0254 (13)0.0176 (12)0.0182 (12)−0.0011 (10)0.0006 (10)0.0013 (10)
C130.0255 (13)0.0184 (12)0.0191 (12)−0.0010 (10)0.0022 (10)0.0006 (10)
C140.0236 (12)0.0222 (13)0.0312 (14)−0.0014 (12)−0.0005 (12)−0.0016 (11)
C150.0262 (13)0.0179 (13)0.0323 (15)−0.0013 (10)−0.0030 (11)0.0043 (11)
C160.0277 (13)0.0157 (12)0.0179 (12)0.0002 (10)−0.0028 (11)0.0009 (10)
C170.0243 (12)0.0205 (12)0.0211 (12)0.0033 (12)−0.0017 (9)0.0009 (11)
C180.0360 (15)0.0148 (13)0.0247 (14)0.0045 (11)−0.0032 (12)−0.0021 (11)
C190.0361 (14)0.0163 (12)0.0259 (13)−0.0040 (13)−0.0051 (14)0.0014 (10)
C200.0275 (12)0.0214 (12)0.0264 (12)−0.0042 (13)−0.0001 (11)0.0025 (11)
C210.0279 (12)0.0155 (12)0.0251 (12)0.0024 (12)−0.0004 (13)0.0019 (10)
Br1—C171.899 (3)C8—H8B0.9900
O1—C121.203 (3)C9—C101.533 (4)
O2—C121.364 (3)C9—H9A0.9900
O2—C61.470 (3)C9—H9B0.9900
O3—C41.435 (3)C10—C141.514 (4)
O3—H30.77 (4)C11—C131.335 (4)
C1—C101.333 (4)C11—C121.487 (4)
C1—C51.525 (3)C13—C161.479 (4)
C1—C21.532 (4)C13—H130.9500
C2—C31.527 (4)C14—H14A0.9800
C2—H2A0.9900C14—H14B0.9800
C2—H2B0.9900C14—H14C0.9800
C3—C41.527 (4)C15—H15A0.9800
C3—H3A0.9900C15—H15B0.9800
C3—H3B0.9900C15—H15C0.9800
C4—C151.525 (4)C16—C171.396 (4)
C4—C51.555 (3)C16—C211.403 (4)
C5—C61.502 (3)C17—C181.389 (4)
C5—H51.0000C18—C191.386 (4)
C6—C71.535 (3)C18—H180.9500
C6—H61.0000C19—C201.393 (4)
C7—C111.514 (4)C19—H190.9500
C7—C81.524 (4)C20—C211.392 (4)
C7—H71.0000C20—H200.9500
C8—C91.532 (4)C21—H210.9500
C8—H8A0.9900
C12—O2—C6110.22 (19)C8—C9—H9A106.9
C4—O3—H3106 (3)C10—C9—H9A106.9
C10—C1—C5130.0 (2)C8—C9—H9B106.9
C10—C1—C2123.2 (2)C10—C9—H9B106.9
C5—C1—C2106.8 (2)H9A—C9—H9B106.7
C3—C2—C1105.8 (2)C1—C10—C14120.2 (2)
C3—C2—H2A110.6C1—C10—C9128.6 (2)
C1—C2—H2A110.6C14—C10—C9110.8 (2)
C3—C2—H2B110.6C13—C11—C12119.4 (2)
C1—C2—H2B110.6C13—C11—C7132.7 (2)
H2A—C2—H2B108.7C12—C11—C7107.5 (2)
C4—C3—C2104.4 (2)O1—C12—O2121.6 (2)
C4—C3—H3A110.9O1—C12—C11129.3 (2)
C2—C3—H3A110.9O2—C12—C11109.1 (2)
C4—C3—H3B110.9C11—C13—C16127.8 (2)
C2—C3—H3B110.9C11—C13—H13116.1
H3A—C3—H3B108.9C16—C13—H13116.1
O3—C4—C15109.8 (2)C10—C14—H14A109.5
O3—C4—C3109.3 (2)C10—C14—H14B109.5
C15—C4—C3111.6 (2)H14A—C14—H14B109.5
O3—C4—C5111.4 (2)C10—C14—H14C109.5
C15—C4—C5112.9 (2)H14A—C14—H14C109.5
C3—C4—C5101.7 (2)H14B—C14—H14C109.5
C6—C5—C1114.0 (2)C4—C15—H15A109.5
C6—C5—C4115.0 (2)C4—C15—H15B109.5
C1—C5—C4103.7 (2)H15A—C15—H15B109.5
C6—C5—H5107.9C4—C15—H15C109.5
C1—C5—H5107.9H15A—C15—H15C109.5
C4—C5—H5107.9H15B—C15—H15C109.5
O2—C6—C5109.59 (19)C17—C16—C21117.4 (2)
O2—C6—C7105.82 (19)C17—C16—C13122.3 (2)
C5—C6—C7114.6 (2)C21—C16—C13119.7 (2)
O2—C6—H6108.9C18—C17—C16122.1 (2)
C5—C6—H6108.9C18—C17—Br1117.7 (2)
C7—C6—H6108.9C16—C17—Br1120.2 (2)
C11—C7—C8118.8 (2)C19—C18—C17119.3 (3)
C11—C7—C6102.0 (2)C19—C18—H18120.3
C8—C7—C6109.8 (2)C17—C18—H18120.3
C11—C7—H7108.6C18—C19—C20120.1 (2)
C8—C7—H7108.6C18—C19—H19120.0
C6—C7—H7108.6C20—C19—H19120.0
C7—C8—C9112.1 (2)C21—C20—C19119.9 (2)
C7—C8—H8A109.2C21—C20—H20120.0
C9—C8—H8A109.2C19—C20—H20120.0
C7—C8—H8B109.2C20—C21—C16121.0 (3)
C9—C8—H8B109.2C20—C21—H21119.5
H8A—C8—H8B107.9C16—C21—H21119.5
C8—C9—C10121.8 (2)
C10—C1—C2—C3178.0 (2)C2—C1—C10—C141.5 (4)
C5—C1—C2—C3−1.5 (3)C5—C1—C10—C98.9 (5)
C1—C2—C3—C426.5 (3)C2—C1—C10—C9−170.6 (3)
C2—C3—C4—O3−158.4 (2)C8—C9—C10—C1−39.4 (4)
C2—C3—C4—C1580.0 (3)C8—C9—C10—C14147.9 (3)
C2—C3—C4—C5−40.6 (3)C8—C7—C11—C13−48.2 (4)
C10—C1—C5—C631.2 (4)C6—C7—C11—C13−169.0 (3)
C2—C1—C5—C6−149.3 (2)C8—C7—C11—C12138.5 (2)
C10—C1—C5—C4157.0 (3)C6—C7—C11—C1217.7 (3)
C2—C1—C5—C4−23.5 (3)C6—O2—C12—O1173.0 (2)
O3—C4—C5—C6−79.2 (3)C6—O2—C12—C11−9.5 (3)
C15—C4—C5—C644.9 (3)C13—C11—C12—O1−3.0 (4)
C3—C4—C5—C6164.5 (2)C7—C11—C12—O1171.3 (3)
O3—C4—C5—C1155.6 (2)C13—C11—C12—O2179.7 (2)
C15—C4—C5—C1−80.3 (2)C7—C11—C12—O2−6.0 (3)
C3—C4—C5—C139.3 (2)C12—C11—C13—C16164.5 (2)
C12—O2—C6—C5145.0 (2)C7—C11—C13—C16−8.2 (5)
C12—O2—C6—C721.0 (3)C11—C13—C16—C17148.9 (3)
C1—C5—C6—O2171.08 (19)C11—C13—C16—C21−40.2 (4)
C4—C5—C6—O251.4 (3)C21—C16—C17—C18−1.1 (4)
C1—C5—C6—C7−70.1 (3)C13—C16—C17—C18170.0 (3)
C4—C5—C6—C7170.2 (2)C21—C16—C17—Br1178.06 (18)
O2—C6—C7—C11−22.9 (2)C13—C16—C17—Br1−10.8 (3)
C5—C6—C7—C11−143.8 (2)C16—C17—C18—C19−0.7 (4)
O2—C6—C7—C8−149.8 (2)Br1—C17—C18—C19−179.9 (2)
C5—C6—C7—C889.3 (3)C17—C18—C19—C202.0 (4)
C11—C7—C8—C9168.4 (2)C18—C19—C20—C21−1.6 (4)
C6—C7—C8—C9−74.9 (3)C19—C20—C21—C16−0.3 (4)
C7—C8—C9—C1057.4 (4)C17—C16—C21—C201.6 (4)
C5—C1—C10—C14−179.1 (2)C13—C16—C21—C20−169.8 (2)
D—H···AD—HH···AD···AD—H···A
O3—H3···O20.77 (4)2.26 (4)2.883 (3)139 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3⋯O20.77 (4)2.26 (4)2.883 (3)139 (4)
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