| Literature DB >> 24454134 |
Narsimha Reddy Penthala1, Venumadhav Janganati1, Sean Parkin2, Kottayil I Varughese3, Peter A Crooks1.
Abstract
The title compound, C21H25NO3 [systematic name: (3aS,9aR,10aR,10bS,E)-3-[(E)-4-(4-amino-benzyl-idene)-6,9a-dimethyl-3a,4,5,8,9,9a,10a,10b-octa-hydro-oxireno[2',3':9,10]cyclo-deca-[1,2-b]furan-2(3H)-one] was obtained from the reaction of parthenolide [synonym: 4,5-ep-oxy-germacra-1(10),11(13)-dieno-12,6-lactone] with 4-iodo-aniline under Heck reaction conditions. It was identified as the E-isomer (conformation about the exocyclic methyl-idene C=C bond; the conformation about the C=C bond in the ten-membered ring is also E). The mol-ecule is built up from fused ten-, five- (lactone) and three-membered (epoxide) rings with a 4-amino-phenyl group as a substituent. The ten-membered ring displays an approximate chair-chair conformation, while the lactone ring has an envelope conformation with the C atom bonded to the ring O atom as the flap. The dihedral angle between the benzene ring of the 4-amino-phenyl moiety and the lactone ring mean plane is 23.50 (8)°. In the crystal, mol-ecules are linked via N-H⋯O hydrogen bonds, between the amine group and the lactone and epoxide ring O atoms, forming chains propagating along the b-axis direction. Adjacent chains are linked via C-H⋯O inter-actions, forming an undulating two-dimensional network lying parallel to the plane (001). The absolute structure of the mol-ecule in the crystal was confirmed by resonance scattering [Flack parameter = 0.03 (3)].Entities:
Year: 2013 PMID: 24454134 PMCID: PMC3884358 DOI: 10.1107/S1600536813028730
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H25NO3 | |
| Melting point = 512–514 K | |
| Orthorhombic, | Cu |
| Hall symbol: P 2ac 2ab | Cell parameters from 9832 reflections |
| θ = 5.2–68.0° | |
| µ = 0.66 mm−1 | |
| Block, colourless | |
| 0.20 × 0.16 × 0.12 mm | |
| Bruker X8 Proteum diffractometer | 3296 independent reflections |
| Radiation source: fine-focus rotating anode | 3267 reflections with |
| Detector resolution: 5.6 pixels mm-1 | |
| φ and ω scans | θmax = 68.2°, θmin = 5.7° |
| Absorption correction: multi-scan ( | |
| 25400 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3296 reflections | Δρmax = 0.13 e Å−3 |
| 234 parameters | Δρmin = −0.14 e Å−3 |
| 0 restraints | Absolute structure: Flack parameter determined using 1383 quotients
[( |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.03 (3) |
| Experimental. Spectroscopic data for the title compound: 1H NMR (400 MHz, CDCl3): δ
7.54-7.55 (d, |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | 0.69671 (14) | 0.83851 (9) | 0.57032 (6) | 0.0269 (3) | |
| O2 | 0.57735 (14) | 0.71820 (9) | 0.43765 (6) | 0.0247 (3) | |
| O3 | 0.57901 (15) | 0.65318 (10) | 0.31945 (6) | 0.0276 (3) | |
| N1 | 0.48608 (19) | −0.03270 (12) | 0.45455 (10) | 0.0323 (3) | |
| H1A | 0.539 (3) | −0.055 (2) | 0.4989 (14) | 0.049* | |
| H2B | 0.495 (3) | −0.077 (2) | 0.4135 (14) | 0.049* | |
| C1 | 0.61245 (19) | 0.79003 (14) | 0.63430 (9) | 0.0255 (4) | |
| C2 | 0.7040 (2) | 0.76874 (16) | 0.70559 (9) | 0.0321 (4) | |
| H1 | 0.7143 | 0.8397 | 0.7344 | 0.038* | |
| H2A | 0.8102 | 0.7420 | 0.6926 | 0.038* | |
| C3 | 0.6202 (2) | 0.67944 (15) | 0.75440 (9) | 0.0325 (4) | |
| H3A | 0.6881 | 0.6579 | 0.7972 | 0.039* | |
| H3B | 0.5227 | 0.7117 | 0.7752 | 0.039* | |
| C4 | 0.5821 (2) | 0.57669 (14) | 0.70835 (9) | 0.0277 (4) | |
| H4 | 0.6688 | 0.5325 | 0.6928 | 0.033* | |
| C5 | 0.4420 (2) | 0.53993 (13) | 0.68657 (8) | 0.0248 (3) | |
| C6 | 0.4284 (2) | 0.44729 (13) | 0.62863 (8) | 0.0259 (3) | |
| H6A | 0.3432 | 0.3957 | 0.6438 | 0.031* | |
| H6B | 0.5268 | 0.4035 | 0.6282 | 0.031* | |
| C7 | 0.39551 (19) | 0.49041 (13) | 0.54839 (8) | 0.0237 (3) | |
| H7A | 0.3090 | 0.5455 | 0.5508 | 0.028* | |
| H7B | 0.3597 | 0.4263 | 0.5172 | 0.028* | |
| C8 | 0.53600 (18) | 0.54638 (12) | 0.50866 (8) | 0.0198 (3) | |
| H8 | 0.6346 | 0.5178 | 0.5321 | 0.024* | |
| C9 | 0.53593 (18) | 0.67758 (12) | 0.51252 (8) | 0.0209 (3) | |
| H9 | 0.4293 | 0.7050 | 0.5263 | 0.025* | |
| C10 | 0.65311 (18) | 0.72056 (12) | 0.56849 (8) | 0.0219 (3) | |
| H10 | 0.7423 | 0.6679 | 0.5775 | 0.026* | |
| C11 | 0.56586 (19) | 0.63346 (13) | 0.38588 (8) | 0.0225 (3) | |
| C12 | 0.54277 (18) | 0.52539 (12) | 0.42479 (8) | 0.0207 (3) | |
| C13 | 0.53493 (19) | 0.43138 (13) | 0.38311 (8) | 0.0223 (3) | |
| H13 | 0.5363 | 0.4441 | 0.3303 | 0.027* | |
| C14 | 0.2884 (2) | 0.58698 (15) | 0.71301 (10) | 0.0321 (4) | |
| H14A | 0.3071 | 0.6429 | 0.7526 | 0.048* | |
| H14B | 0.2236 | 0.5260 | 0.7331 | 0.048* | |
| H14C | 0.2345 | 0.6227 | 0.6706 | 0.048* | |
| C15 | 0.4537 (2) | 0.84179 (14) | 0.64419 (9) | 0.0301 (4) | |
| H15A | 0.4639 | 0.9142 | 0.6702 | 0.045* | |
| H15B | 0.3878 | 0.7913 | 0.6741 | 0.045* | |
| H15C | 0.4057 | 0.8537 | 0.5947 | 0.045* | |
| C16 | 0.52461 (18) | 0.31328 (13) | 0.40450 (9) | 0.0228 (3) | |
| C17 | 0.5641 (2) | 0.27104 (12) | 0.47583 (8) | 0.0253 (3) | |
| H17 | 0.6003 | 0.3214 | 0.5136 | 0.030* | |
| C18 | 0.5517 (2) | 0.15768 (13) | 0.49238 (9) | 0.0276 (3) | |
| H18 | 0.5777 | 0.1314 | 0.5414 | 0.033* | |
| C19 | 0.50076 (19) | 0.08115 (13) | 0.43735 (10) | 0.0266 (3) | |
| C20 | 0.46429 (19) | 0.12208 (14) | 0.36578 (9) | 0.0266 (3) | |
| H20 | 0.4306 | 0.0715 | 0.3276 | 0.032* | |
| C21 | 0.47670 (19) | 0.23526 (13) | 0.35002 (9) | 0.0245 (3) | |
| H21 | 0.4521 | 0.2611 | 0.3008 | 0.029* |
| O1 | 0.0341 (6) | 0.0208 (5) | 0.0258 (6) | −0.0064 (5) | 0.0045 (5) | −0.0028 (5) |
| O2 | 0.0368 (6) | 0.0174 (5) | 0.0199 (5) | −0.0020 (5) | 0.0000 (5) | 0.0017 (4) |
| O3 | 0.0358 (6) | 0.0279 (6) | 0.0190 (5) | −0.0027 (5) | −0.0006 (5) | 0.0043 (4) |
| N1 | 0.0364 (8) | 0.0191 (7) | 0.0415 (8) | −0.0011 (6) | 0.0020 (7) | 0.0013 (6) |
| C1 | 0.0310 (8) | 0.0222 (7) | 0.0232 (8) | −0.0057 (6) | 0.0029 (6) | −0.0029 (6) |
| C2 | 0.0339 (9) | 0.0375 (9) | 0.0248 (8) | −0.0065 (8) | −0.0004 (7) | −0.0055 (7) |
| C3 | 0.0343 (9) | 0.0430 (10) | 0.0201 (8) | −0.0023 (8) | −0.0030 (7) | 0.0005 (7) |
| C4 | 0.0320 (8) | 0.0297 (8) | 0.0212 (7) | 0.0066 (7) | 0.0028 (7) | 0.0048 (6) |
| C5 | 0.0342 (9) | 0.0220 (7) | 0.0183 (7) | 0.0041 (7) | 0.0033 (7) | 0.0048 (6) |
| C6 | 0.0346 (9) | 0.0194 (7) | 0.0236 (7) | 0.0020 (7) | 0.0069 (7) | 0.0046 (6) |
| C7 | 0.0269 (8) | 0.0203 (7) | 0.0238 (8) | −0.0003 (6) | 0.0024 (6) | 0.0014 (6) |
| C8 | 0.0237 (8) | 0.0164 (7) | 0.0191 (7) | 0.0006 (6) | 0.0002 (6) | 0.0006 (5) |
| C9 | 0.0266 (8) | 0.0175 (7) | 0.0185 (7) | 0.0021 (6) | 0.0016 (6) | 0.0008 (5) |
| C10 | 0.0261 (7) | 0.0177 (7) | 0.0220 (7) | −0.0004 (6) | 0.0016 (6) | 0.0014 (6) |
| C11 | 0.0256 (8) | 0.0206 (7) | 0.0212 (7) | 0.0012 (6) | −0.0012 (6) | −0.0002 (6) |
| C12 | 0.0229 (7) | 0.0194 (7) | 0.0197 (7) | −0.0002 (6) | −0.0007 (6) | 0.0014 (6) |
| C13 | 0.0254 (8) | 0.0233 (8) | 0.0183 (7) | 0.0023 (6) | −0.0002 (6) | 0.0009 (6) |
| C14 | 0.0346 (9) | 0.0279 (8) | 0.0340 (9) | 0.0007 (8) | 0.0070 (7) | −0.0037 (7) |
| C15 | 0.0374 (9) | 0.0242 (8) | 0.0287 (8) | 0.0011 (7) | 0.0045 (7) | −0.0054 (7) |
| C16 | 0.0260 (8) | 0.0196 (7) | 0.0229 (7) | 0.0015 (6) | 0.0009 (6) | −0.0024 (6) |
| C17 | 0.0325 (8) | 0.0198 (7) | 0.0235 (7) | 0.0036 (7) | −0.0022 (7) | −0.0033 (6) |
| C18 | 0.0329 (9) | 0.0235 (7) | 0.0265 (8) | 0.0046 (7) | −0.0001 (7) | 0.0014 (6) |
| C19 | 0.0242 (7) | 0.0192 (7) | 0.0365 (9) | 0.0005 (6) | 0.0031 (7) | −0.0004 (7) |
| C20 | 0.0256 (8) | 0.0229 (8) | 0.0314 (8) | −0.0004 (6) | −0.0019 (7) | −0.0060 (6) |
| C21 | 0.0265 (8) | 0.0242 (8) | 0.0229 (7) | 0.0016 (6) | −0.0011 (6) | −0.0031 (6) |
| O1—C10 | 1.4510 (18) | C8—C12 | 1.5101 (19) |
| O1—C1 | 1.4634 (19) | C8—C9 | 1.561 (2) |
| O2—C11 | 1.3667 (18) | C8—H8 | 1.0000 |
| O2—C9 | 1.4573 (17) | C9—C10 | 1.501 (2) |
| O3—C11 | 1.2072 (18) | C9—H9 | 1.0000 |
| N1—C19 | 1.393 (2) | C10—H10 | 1.0000 |
| N1—H1A | 0.94 (2) | C11—C12 | 1.472 (2) |
| N1—H2B | 0.90 (2) | C12—C13 | 1.342 (2) |
| C1—C10 | 1.472 (2) | C13—C16 | 1.457 (2) |
| C1—C15 | 1.502 (2) | C13—H13 | 0.9500 |
| C1—C2 | 1.510 (2) | C14—H14A | 0.9800 |
| C2—C3 | 1.547 (2) | C14—H14B | 0.9800 |
| C2—H1 | 0.9900 | C14—H14C | 0.9800 |
| C2—H2A | 0.9900 | C15—H15A | 0.9800 |
| C3—C4 | 1.505 (2) | C15—H15B | 0.9800 |
| C3—H3A | 0.9900 | C15—H15C | 0.9800 |
| C3—H3B | 0.9900 | C16—C21 | 1.401 (2) |
| C4—C5 | 1.334 (3) | C16—C17 | 1.403 (2) |
| C4—H4 | 0.9500 | C17—C18 | 1.383 (2) |
| C5—C14 | 1.504 (2) | C17—H17 | 0.9500 |
| C5—C6 | 1.511 (2) | C18—C19 | 1.404 (2) |
| C6—C7 | 1.539 (2) | C18—H18 | 0.9500 |
| C6—H6A | 0.9900 | C19—C20 | 1.395 (2) |
| C6—H6B | 0.9900 | C20—C21 | 1.378 (2) |
| C7—C8 | 1.545 (2) | C20—H20 | 0.9500 |
| C7—H7A | 0.9900 | C21—H21 | 0.9500 |
| C7—H7B | 0.9900 | ||
| C10—O1—C1 | 60.67 (10) | C10—C9—C8 | 111.63 (12) |
| C11—O2—C9 | 110.56 (11) | O2—C9—H9 | 109.7 |
| C19—N1—H1A | 114.0 (15) | C10—C9—H9 | 109.7 |
| C19—N1—H2B | 112.6 (15) | C8—C9—H9 | 109.7 |
| H1A—N1—H2B | 118 (2) | O1—C10—C1 | 60.08 (9) |
| O1—C1—C10 | 59.25 (9) | O1—C10—C9 | 121.02 (12) |
| O1—C1—C15 | 112.05 (13) | C1—C10—C9 | 123.89 (14) |
| C10—C1—C15 | 122.43 (14) | O1—C10—H10 | 113.8 |
| O1—C1—C2 | 117.39 (14) | C1—C10—H10 | 113.8 |
| C10—C1—C2 | 116.62 (15) | C9—C10—H10 | 113.8 |
| C15—C1—C2 | 116.15 (14) | O3—C11—O2 | 120.44 (14) |
| C1—C2—C3 | 110.08 (14) | O3—C11—C12 | 129.80 (14) |
| C1—C2—H1 | 109.6 | O2—C11—C12 | 109.72 (12) |
| C3—C2—H1 | 109.6 | C13—C12—C11 | 118.35 (13) |
| C1—C2—H2A | 109.6 | C13—C12—C8 | 132.77 (14) |
| C3—C2—H2A | 109.6 | C11—C12—C8 | 108.87 (12) |
| H1—C2—H2A | 108.2 | C12—C13—C16 | 131.43 (14) |
| C4—C3—C2 | 110.68 (13) | C12—C13—H13 | 114.3 |
| C4—C3—H3A | 109.5 | C16—C13—H13 | 114.3 |
| C2—C3—H3A | 109.5 | C5—C14—H14A | 109.5 |
| C4—C3—H3B | 109.5 | C5—C14—H14B | 109.5 |
| C2—C3—H3B | 109.5 | H14A—C14—H14B | 109.5 |
| H3A—C3—H3B | 108.1 | C5—C14—H14C | 109.5 |
| C5—C4—C3 | 128.15 (15) | H14A—C14—H14C | 109.5 |
| C5—C4—H4 | 115.9 | H14B—C14—H14C | 109.5 |
| C3—C4—H4 | 115.9 | C1—C15—H15A | 109.5 |
| C4—C5—C14 | 125.04 (14) | C1—C15—H15B | 109.5 |
| C4—C5—C6 | 120.33 (15) | H15A—C15—H15B | 109.5 |
| C14—C5—C6 | 114.58 (15) | C1—C15—H15C | 109.5 |
| C5—C6—C7 | 113.64 (12) | H15A—C15—H15C | 109.5 |
| C5—C6—H6A | 108.8 | H15B—C15—H15C | 109.5 |
| C7—C6—H6A | 108.8 | C21—C16—C17 | 117.15 (14) |
| C5—C6—H6B | 108.8 | C21—C16—C13 | 118.40 (14) |
| C7—C6—H6B | 108.8 | C17—C16—C13 | 124.42 (14) |
| H6A—C6—H6B | 107.7 | C18—C17—C16 | 121.43 (15) |
| C6—C7—C8 | 115.03 (13) | C18—C17—H17 | 119.3 |
| C6—C7—H7A | 108.5 | C16—C17—H17 | 119.3 |
| C8—C7—H7A | 108.5 | C17—C18—C19 | 120.49 (15) |
| C6—C7—H7B | 108.5 | C17—C18—H18 | 119.8 |
| C8—C7—H7B | 108.5 | C19—C18—H18 | 119.8 |
| H7A—C7—H7B | 107.5 | N1—C19—C20 | 121.19 (15) |
| C12—C8—C7 | 114.12 (13) | N1—C19—C18 | 120.33 (16) |
| C12—C8—C9 | 102.02 (11) | C20—C19—C18 | 118.47 (15) |
| C7—C8—C9 | 114.19 (12) | C21—C20—C19 | 120.52 (15) |
| C12—C8—H8 | 108.7 | C21—C20—H20 | 119.7 |
| C7—C8—H8 | 108.7 | C19—C20—H20 | 119.7 |
| C9—C8—H8 | 108.7 | C20—C21—C16 | 121.91 (15) |
| O2—C9—C10 | 109.13 (12) | C20—C21—H21 | 119.0 |
| O2—C9—C8 | 106.91 (11) | C16—C21—H21 | 119.0 |
| C10—O1—C1—C15 | −115.61 (15) | C8—C9—C10—O1 | 166.95 (12) |
| C10—O1—C1—C2 | 106.19 (17) | O2—C9—C10—C1 | 121.71 (15) |
| O1—C1—C2—C3 | −158.44 (14) | C8—C9—C10—C1 | −120.33 (15) |
| C10—C1—C2—C3 | −91.06 (18) | C9—O2—C11—O3 | 171.96 (15) |
| C15—C1—C2—C3 | 65.05 (19) | C9—O2—C11—C12 | −9.99 (16) |
| C1—C2—C3—C4 | 51.03 (19) | O3—C11—C12—C13 | 0.4 (3) |
| C2—C3—C4—C5 | −110.84 (19) | O2—C11—C12—C13 | −177.46 (14) |
| C3—C4—C5—C14 | −8.7 (3) | O3—C11—C12—C8 | 179.14 (17) |
| C3—C4—C5—C6 | 168.64 (15) | O2—C11—C12—C8 | 1.33 (18) |
| C4—C5—C6—C7 | −98.81 (18) | C7—C8—C12—C13 | −50.8 (2) |
| C14—C5—C6—C7 | 78.79 (18) | C9—C8—C12—C13 | −174.49 (17) |
| C5—C6—C7—C8 | 73.72 (17) | C7—C8—C12—C11 | 130.63 (13) |
| C6—C7—C8—C12 | 144.91 (13) | C9—C8—C12—C11 | 6.96 (17) |
| C6—C7—C8—C9 | −98.26 (15) | C11—C12—C13—C16 | 174.88 (16) |
| C11—O2—C9—C10 | 135.27 (13) | C8—C12—C13—C16 | −3.6 (3) |
| C11—O2—C9—C8 | 14.39 (16) | C12—C13—C16—C21 | 163.27 (17) |
| C12—C8—C9—O2 | −12.50 (15) | C12—C13—C16—C17 | −18.8 (3) |
| C7—C8—C9—O2 | −136.12 (12) | C21—C16—C17—C18 | −2.0 (2) |
| C12—C8—C9—C10 | −131.78 (13) | C13—C16—C17—C18 | −179.96 (16) |
| C7—C8—C9—C10 | 104.60 (15) | C16—C17—C18—C19 | 0.9 (3) |
| C1—O1—C10—C9 | 113.87 (16) | C17—C18—C19—N1 | −179.03 (16) |
| C15—C1—C10—O1 | 98.02 (16) | C17—C18—C19—C20 | 0.4 (2) |
| C2—C1—C10—O1 | −107.50 (15) | N1—C19—C20—C21 | 178.82 (16) |
| O1—C1—C10—C9 | −109.26 (15) | C18—C19—C20—C21 | −0.6 (2) |
| C15—C1—C10—C9 | −11.2 (2) | C19—C20—C21—C16 | −0.5 (2) |
| C2—C1—C10—C9 | 143.25 (15) | C17—C16—C21—C20 | 1.8 (2) |
| O2—C9—C10—O1 | 49.00 (18) | C13—C16—C21—C20 | 179.88 (15) |
| H··· | ||||
| N1—H1 | 0.94 (2) | 2.25 (3) | 3.133 (2) | 156 (2) |
| N1—H2 | 0.90 (2) | 2.57 (2) | 3.077 (2) | 116 (2) |
| C2—H2 | 0.99 | 2.63 | 3.372 (2) | 132 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.94 (2) | 2.25 (3) | 3.133 (2) | 156 (2) |
| N1—H2 | 0.90 (2) | 2.57 (2) | 3.077 (2) | 116 (2) |
| C2—H2 | 0.99 | 2.63 | 3.372 (2) | 132 |
Symmetry codes: (i) ; (ii) .