Literature DB >> 24764907

9-[4-(Azido-meth-yl)phen-yl]-9H-carbazole-3-carbo-nitrile.

C Ramathilagam1, P R Umarani2, N Venkatesan3, P Rajakumar3, B Gunasekaran4, V Manivannan5.   

Abstract

In the title compound C20H13N5, the dihedral angle between the carbazole ring system (r.m.s. deviation = 0.027 Å) and the pendant benzene ring is 55.08 (6)°. One of the azide N atoms is disordered over two positions in a 0.65 (2):0.35 (2) ratio. In the crystal, aromatic π-π stacking is observed [minimum centroid-centroid separation = 3.6499 (13) Å] as well as inversion-dimers connected by pairs of weak C-H⋯π inter-actions.

Entities:  

Year:  2014        PMID: 24764907      PMCID: PMC3998346          DOI: 10.1107/S1600536814001391

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of carbazole derivatives, see: Ramsewak et al. (1999 ▶); Tachibana et al. (2001 ▶); Itoigawa et al. (2000 ▶); Friend et al. (1999 ▶). For related structures, see: Velmurugan et al. (2010 ▶); Ramathilagam et al. (2011 ▶)

Experimental

Crystal data

C20H13N5 M = 323.35 Monoclinic, a = 9.8457 (2) Å b = 8.4032 (2) Å c = 19.9127 (5) Å β = 90.970 (2)° V = 1647.25 (7) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 295 K 0.25 × 0.20 × 0.20 mm

Data collection

Bruker kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.958, T max = 0.984 15375 measured reflections 4076 independent reflections 2676 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.230 S = 1.07 4076 reflections 236 parameters 10 restraints H-atom parameters constrained Δρmax = 0.67 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814001391/hb7185sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814001391/hb7185Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814001391/hb7185Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H13N5F(000) = 672
Mr = 323.35Dx = 1.304 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4076 reflections
a = 9.8457 (2) Åθ = 2.0–28.3°
b = 8.4032 (2) ŵ = 0.08 mm1
c = 19.9127 (5) ÅT = 295 K
β = 90.970 (2)°Block, pale yellow
V = 1647.25 (7) Å30.25 × 0.20 × 0.20 mm
Z = 4
Bruker kappa APEXII CCD diffractometer4076 independent reflections
Radiation source: fine-focus sealed tube2676 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
Detector resolution: 0 pixels mm-1θmax = 28.3°, θmin = 2.1°
ω and φ scansh = −12→13
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −10→11
Tmin = 0.958, Tmax = 0.984l = −26→26
15375 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.230H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.1219P)2 + 0.4961P] where P = (Fo2 + 2Fc2)/3
4076 reflections(Δ/σ)max < 0.001
236 parametersΔρmax = 0.67 e Å3
10 restraintsΔρmin = −0.32 e Å3
xyzUiso*/UeqOcc. (<1)
C10.1427 (2)0.6443 (3)−0.02437 (10)0.0462 (5)
C20.0810 (2)0.7908 (3)−0.03579 (11)0.0532 (5)
H20.08910.8728−0.00460.064*
C30.0079 (3)0.8108 (3)−0.09424 (12)0.0584 (6)
H3−0.03550.9073−0.10250.070*
C4−0.0026 (2)0.6891 (3)−0.14171 (11)0.0554 (6)
C50.0600 (2)0.5431 (3)−0.13083 (10)0.0502 (5)
H50.05330.4627−0.16280.060*
C60.1326 (2)0.5191 (2)−0.07139 (10)0.0453 (5)
C70.2076 (2)0.3867 (3)−0.04382 (11)0.0473 (5)
C80.2302 (2)0.2308 (3)−0.06541 (12)0.0541 (5)
H80.19610.1962−0.10670.065*
C90.3039 (2)0.1295 (3)−0.02440 (13)0.0602 (6)
H90.32020.0258−0.03840.072*
C100.3538 (3)0.1802 (3)0.03750 (13)0.0638 (6)
H100.40190.10890.06460.077*
C110.3343 (3)0.3342 (3)0.06016 (12)0.0591 (6)
H110.36870.36770.10160.071*
C120.2609 (2)0.4363 (3)0.01842 (11)0.0491 (5)
C130.2663 (2)0.6895 (2)0.08503 (10)0.0470 (5)
C140.4037 (2)0.7025 (3)0.09936 (12)0.0559 (6)
H140.46660.65110.07260.067*
C150.4469 (3)0.7928 (3)0.15393 (13)0.0607 (6)
H150.53930.80000.16400.073*
C160.3556 (3)0.8719 (3)0.19349 (11)0.0600 (6)
C170.2184 (3)0.8588 (3)0.17812 (11)0.0585 (6)
H170.15560.91190.20440.070*
C180.1733 (2)0.7679 (3)0.12418 (11)0.0535 (5)
H180.08090.75960.11440.064*
C19−0.0782 (3)0.7148 (3)−0.20322 (13)0.0720 (7)
C200.4028 (4)0.9678 (4)0.25333 (15)0.0909 (10)
H20A0.49850.99110.24790.109*
H20B0.35481.06860.25230.109*
N10.22210 (19)0.5936 (2)0.02970 (9)0.0501 (5)
N2−0.1372 (4)0.7353 (4)−0.25201 (14)0.1079 (10)
N30.4560 (12)0.8595 (18)0.3064 (5)0.106 (4)0.35 (2)
N3A0.3867 (14)0.9011 (9)0.3169 (3)0.134 (4)0.65 (2)
N40.3659 (4)0.7676 (7)0.32487 (16)0.1170 (13)
N50.3230 (6)0.6426 (7)0.3378 (3)0.186 (3)
U11U22U33U12U13U23
C10.0527 (11)0.0444 (11)0.0414 (10)−0.0050 (9)−0.0002 (8)0.0002 (8)
C20.0671 (13)0.0423 (12)0.0502 (12)−0.0001 (10)−0.0010 (10)−0.0016 (9)
C30.0714 (15)0.0498 (13)0.0538 (12)0.0052 (11)−0.0009 (11)0.0063 (10)
C40.0656 (14)0.0580 (14)0.0425 (11)−0.0009 (10)−0.0018 (10)0.0077 (9)
C50.0591 (12)0.0503 (12)0.0413 (10)−0.0080 (9)0.0015 (9)−0.0012 (9)
C60.0499 (11)0.0430 (11)0.0431 (10)−0.0062 (8)0.0037 (8)−0.0002 (8)
C70.0513 (11)0.0444 (11)0.0462 (11)−0.0047 (8)0.0020 (8)−0.0014 (8)
C80.0584 (12)0.0478 (12)0.0561 (13)−0.0058 (10)0.0016 (10)−0.0078 (10)
C90.0661 (14)0.0428 (12)0.0717 (15)0.0011 (10)0.0036 (12)−0.0033 (10)
C100.0712 (15)0.0511 (14)0.0688 (15)0.0082 (11)−0.0046 (12)0.0065 (11)
C110.0697 (14)0.0531 (14)0.0540 (13)0.0034 (11)−0.0085 (11)0.0006 (10)
C120.0547 (11)0.0431 (11)0.0496 (11)−0.0034 (9)0.0000 (9)−0.0013 (9)
C130.0587 (12)0.0416 (11)0.0405 (10)−0.0067 (9)−0.0041 (8)−0.0005 (8)
C140.0579 (13)0.0554 (13)0.0543 (12)−0.0036 (10)0.0004 (10)−0.0017 (10)
C150.0632 (14)0.0579 (14)0.0606 (13)−0.0114 (11)−0.0123 (11)0.0004 (11)
C160.0848 (17)0.0479 (13)0.0468 (12)−0.0102 (11)−0.0128 (11)−0.0002 (9)
C170.0772 (16)0.0525 (13)0.0458 (12)0.0007 (11)0.0028 (11)−0.0061 (10)
C180.0587 (12)0.0504 (13)0.0512 (12)−0.0028 (10)−0.0015 (10)−0.0019 (10)
C190.096 (2)0.0680 (17)0.0518 (14)0.0063 (14)−0.0078 (13)0.0073 (12)
C200.123 (3)0.083 (2)0.0659 (18)−0.0031 (18)−0.0312 (17)−0.0208 (15)
N10.0608 (11)0.0419 (10)0.0472 (10)0.0001 (8)−0.0076 (8)−0.0047 (7)
N20.157 (3)0.102 (2)0.0629 (15)0.021 (2)−0.0350 (17)0.0106 (15)
N30.074 (5)0.200 (7)0.044 (5)0.028 (5)−0.013 (3)−0.012 (5)
N3A0.157 (8)0.172 (6)0.073 (3)−0.066 (5)0.018 (4)−0.039 (4)
N40.112 (3)0.176 (4)0.0636 (17)0.046 (3)0.0171 (17)0.027 (2)
N50.194 (5)0.181 (4)0.187 (5)0.079 (3)0.087 (4)0.105 (4)
C1—N11.387 (3)C12—N11.395 (3)
C1—C21.389 (3)C13—C181.380 (3)
C1—C61.411 (3)C13—C141.382 (3)
C2—C31.368 (3)C13—N11.427 (3)
C2—H20.9300C14—C151.386 (3)
C3—C41.396 (3)C14—H140.9300
C3—H30.9300C15—C161.377 (4)
C4—C51.389 (3)C15—H150.9300
C4—C191.439 (3)C16—C171.385 (4)
C5—C61.387 (3)C16—C201.505 (3)
C5—H50.9300C17—C181.385 (3)
C6—C71.439 (3)C17—H170.9300
C7—C81.397 (3)C18—H180.9300
C7—C121.401 (3)C19—N21.137 (4)
C8—C91.378 (3)C20—N3A1.397 (8)
C8—H80.9300C20—N31.483 (11)
C9—C101.387 (4)C20—H20A0.9700
C9—H90.9300C20—H20B0.9700
C10—C111.385 (4)N3—N41.237 (14)
C10—H100.9300N3A—N41.1513 (10)
C11—C121.389 (3)N4—N51.163 (7)
C11—H110.9300
N1—C1—C2129.68 (19)C18—C13—C14120.1 (2)
N1—C1—C6108.53 (18)C18—C13—N1120.60 (19)
C2—C1—C6121.78 (19)C14—C13—N1119.3 (2)
C3—C2—C1118.0 (2)C13—C14—C15119.5 (2)
C3—C2—H2121.0C13—C14—H14120.3
C1—C2—H2121.0C15—C14—H14120.3
C2—C3—C4121.2 (2)C16—C15—C14121.2 (2)
C2—C3—H3119.4C16—C15—H15119.4
C4—C3—H3119.4C14—C15—H15119.4
C5—C4—C3120.9 (2)C15—C16—C17118.6 (2)
C5—C4—C19119.2 (2)C15—C16—C20121.1 (3)
C3—C4—C19119.9 (2)C17—C16—C20120.3 (3)
C6—C5—C4118.9 (2)C16—C17—C18120.9 (2)
C6—C5—H5120.6C16—C17—H17119.5
C4—C5—H5120.6C18—C17—H17119.5
C5—C6—C1119.2 (2)C13—C18—C17119.6 (2)
C5—C6—C7133.7 (2)C13—C18—H18120.2
C1—C6—C7107.10 (18)C17—C18—H18120.2
C8—C7—C12119.5 (2)N2—C19—C4179.6 (4)
C8—C7—C6133.7 (2)N3A—C20—C16117.7 (3)
C12—C7—C6106.80 (19)N3—C20—C16109.6 (6)
C9—C8—C7118.8 (2)N3A—C20—H20A107.9
C9—C8—H8120.6N3—C20—H20A82.6
C7—C8—H8120.6C16—C20—H20A107.9
C8—C9—C10120.8 (2)N3A—C20—H20B107.9
C8—C9—H9119.6N3—C20—H20B135.8
C10—C9—H9119.6C16—C20—H20B107.9
C11—C10—C9121.8 (2)H20A—C20—H20B107.2
C11—C10—H10119.1C1—N1—C12108.59 (17)
C9—C10—H10119.1C1—N1—C13125.89 (18)
C10—C11—C12117.1 (2)C12—N1—C13125.34 (18)
C10—C11—H11121.4N4—N3—C20110.4 (7)
C12—C11—H11121.4N4—N3A—C20122.6 (6)
C11—C12—N1129.1 (2)N3A—N4—N5167.6 (8)
C11—C12—C7121.9 (2)N5—N4—N3153.5 (8)
N1—C12—C7108.97 (19)
N1—C1—C2—C3179.5 (2)C14—C15—C16—C170.5 (4)
C6—C1—C2—C30.7 (3)C14—C15—C16—C20179.1 (2)
C1—C2—C3—C4−1.1 (4)C15—C16—C17—C180.1 (4)
C2—C3—C4—C50.5 (4)C20—C16—C17—C18−178.4 (2)
C2—C3—C4—C19−178.9 (2)C14—C13—C18—C17−0.4 (3)
C3—C4—C5—C60.6 (3)N1—C13—C18—C17179.3 (2)
C19—C4—C5—C6−180.0 (2)C16—C17—C18—C13−0.2 (3)
C4—C5—C6—C1−1.0 (3)C15—C16—C20—N3A−103.0 (8)
C4—C5—C6—C7179.6 (2)C17—C16—C20—N3A75.6 (8)
N1—C1—C6—C5−178.63 (18)C15—C16—C20—N3−69.1 (6)
C2—C1—C6—C50.4 (3)C17—C16—C20—N3109.5 (6)
N1—C1—C6—C70.9 (2)C2—C1—N1—C12180.0 (2)
C2—C1—C6—C7179.95 (19)C6—C1—N1—C12−1.1 (2)
C5—C6—C7—C8−3.3 (4)C2—C1—N1—C13−4.8 (4)
C1—C6—C7—C8177.3 (2)C6—C1—N1—C13174.15 (19)
C5—C6—C7—C12179.1 (2)C11—C12—N1—C1−176.2 (2)
C1—C6—C7—C12−0.4 (2)C7—C12—N1—C10.9 (2)
C12—C7—C8—C90.5 (3)C11—C12—N1—C138.5 (4)
C6—C7—C8—C9−176.9 (2)C7—C12—N1—C13−174.42 (19)
C7—C8—C9—C100.6 (4)C18—C13—N1—C157.2 (3)
C8—C9—C10—C11−1.1 (4)C14—C13—N1—C1−123.1 (2)
C9—C10—C11—C120.6 (4)C18—C13—N1—C12−128.3 (2)
C10—C11—C12—N1177.2 (2)C14—C13—N1—C1251.3 (3)
C10—C11—C12—C70.5 (4)N3A—C20—N3—N450.2 (7)
C8—C7—C12—C11−1.0 (3)C16—C20—N3—N4−61.0 (11)
C6—C7—C12—C11177.0 (2)N3—C20—N3A—N4−66.7 (13)
C8—C7—C12—N1−178.34 (19)C16—C20—N3A—N416.2 (17)
C6—C7—C12—N1−0.3 (2)C20—N3A—N4—N5−118 (3)
C18—C13—C14—C151.0 (3)C20—N3A—N4—N368.5 (11)
N1—C13—C14—C15−178.6 (2)C20—N3—N4—N3A−51.9 (9)
C13—C14—C15—C16−1.1 (4)C20—N3—N4—N5131.1 (12)
D—H···AD—HH···AD···AD—H···A
C14—H14···Cg3i0.932.913.673 (2)140
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C7–C12 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C14—H14⋯Cg3i 0.932.913.673 (2)140

Symmetry code: (i) .

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1.  A short history of SHELX.

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2.  Antioxidative activity of carbazoles from Murraya koenigii leaves.

Authors:  Y Tachibana; H Kikuzaki; N H Lajis; N Nakatani
Journal:  J Agric Food Chem       Date:  2001-11       Impact factor: 5.279

3.  Biologically active carbazole alkaloids from Murraya koenigii.

Authors:  R S Ramsewak; M G Nair; G M Strasburg; D L DeWitt; J L Nitiss
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4.  Antitumor agents. 203. Carbazole alkaloid murrayaquinone A and related synthetic carbazolequinones as cytotoxic agents.

Authors:  M Itoigawa; Y Kashiwada; C Ito; H Furukawa; Y Tachibana; K F Bastow; K H Lee
Journal:  J Nat Prod       Date:  2000-07       Impact factor: 4.050

5.  2-(1,2,3,4-Tetra-hydro-9H-carbazol-1-yl-idene)propane-dinitrile.

Authors:  R Velmurugan; M Sekar; A Chandramohan; P Ramesh; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-30

6.  9-p-Tolyl-9H-carbazole-3-carbonitrile.

Authors:  C Ramathilagam; N Venkatesan; P Rajakumar; P R Umarani; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
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