Literature DB >> 2475853

Identification of new human repetitive sequences: characterization of the corresponding cDNAs and their expression in embryonal carcinoma cells.

G La Mantia1, G Pengue, D Maglione, A Pannuti, A Pascucci, L Lania.   

Abstract

We have identified new repeated interspersed DNA sequences by analysis of homologous RNA transcripts from a human teratocarcinoma cell line (NTERA-2 clone D1). The abundance of transcripts varies upon retinoic acid induced differentiation of NTERA-2/D1 cells, and it is highest when the cells display the embryonal carcinoma phenotype. The expression of these novel repeated sequences appears to be tissue specific as no detectable expression was found in various cell lines of different embryological derivation. Characterization of the RNA transcripts by analysis of recombinant cDNA clones indicated that transcripts of different genomic units are present in undifferentiated embryonal teratocarcinoma cells. Nucleotide sequencing of the cloned cDNAs reveals a complex structure composed by unique and tandemly repeated sub-elements.

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Year:  1989        PMID： 2475853      PMCID： PMC318249          DOI： 10.1093/nar/17.15.5913

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  28 in total

Review 1.  The origin and evolution of retroposons.

Authors:  J H Rogers
Journal:  Int Rev Cytol       Date:  1985

2.  Sequence analysis of a KpnI family member near the 3' end of human beta-globin gene.

Authors:  M Hattori; S Hidaka; Y Sakaki
Journal:  Nucleic Acids Res       Date:  1985-11-11       Impact factor: 16.971

3.  Posttranscriptional control of human homeobox gene expression in induced NTERA-2 embryonal carcinoma cells.

Authors:  A Simeone; D Acampora; M D'Esposito; A Faiella; M Pannese; L Scotto; M Montanucci; G D'Alessandro; F Mavilio; E Boncinelli
Journal:  Mol Reprod Dev       Date:  1989       Impact factor: 2.609

4.  Most highly repeated dispersed DNA families in the mouse genome.

Authors:  K L Bennett; R E Hill; D F Pietras; M Woodworth-Gutai; C Kane-Haas; J M Houston; J K Heath; N D Hastie
Journal:  Mol Cell Biol       Date:  1984-08       Impact factor: 4.272

5.  A comprehensive sequence analysis program for the IBM personal computer.

Authors:  C Queen; L J Korn
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

6.  A transposon-like element in human DNA.

Authors:  K E Paulson; N Deka; C W Schmid; R Misra; C W Schindler; M G Rush; L Kadyk; L Leinwand
Journal:  Nature       Date:  1985 Jul 25-31       Impact factor: 49.962

7.  Expression of a cytoplasmic LINE-1 transcript is regulated in a human teratocarcinoma cell line.

Authors:  J Skowronski; M F Singer
Journal:  Proc Natl Acad Sci U S A       Date:  1985-09       Impact factor: 11.205

8.  Post-transcriptional regulation of glyceraldehyde-3-phosphate-dehydrogenase gene expression in rat tissues.

Authors:  M Piechaczyk; J M Blanchard; L Marty; C Dani; F Panabieres; S El Sabouty; P Fort; P Jeanteur
Journal:  Nucleic Acids Res       Date:  1984-09-25       Impact factor: 16.971

9.  Alu sequences are processed 7SL RNA genes.

Authors:  E Ullu; C Tschudi
Journal:  Nature       Date:  1984 Nov 8-14       Impact factor: 49.962

10.  Defining the beginning and end of KpnI family segments.

Authors:  G Grimaldi; J Skowronski; M F Singer
Journal:  EMBO J       Date:  1984-08       Impact factor: 11.598
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  12 in total

1.  Prototypic sequences for human repetitive DNA.

Authors:  J Jurka; J Walichiewicz; A Milosavljevic
Journal:  J Mol Evol       Date:  1992-10       Impact factor: 2.395

2.  Identification of regulatory elements within the minimal promoter region of the human endogenous ERV9 proviruses: accurate transcription initiation is controlled by an Inr-like element.

Authors:  G La Mantia; B Majello; A Di Cristofano; M Strazzullo; G Minchiotti; L Lania
Journal:  Nucleic Acids Res       Date:  1992-08-25       Impact factor: 16.971

3.  Identification and characterization of novel human endogenous retroviral sequences prefentially expressed in undifferentiated embryonal carcinoma cells.

Authors:  G La Mantia; D Maglione; G Pengue; A Di Cristofano; A Simeone; L Lanfrancone; L Lania
Journal:  Nucleic Acids Res       Date:  1991-04-11       Impact factor: 16.971

4.  A revised nomenclature for transcribed human endogenous retroviral loci.

Authors:  Jens Mayer; Jonas Blomberg; Ruth L Seal
Journal:  Mob DNA       Date:  2011-05-04

5.  Evolutionary relationship between human major histocompatibility complex HLA-DR haplotypes.

Authors:  A C Svensson; N Setterblad; U Pihlgren; L Rask; G Andersson
Journal:  Immunogenetics       Date:  1996       Impact factor: 2.846

6.  Isolation of novel human endogenous retrovirus-like elements with foamy virus-related pol sequence.

Authors:  A Cordonnier; J F Casella; T Heidmann
Journal:  J Virol       Date:  1995-09       Impact factor: 5.103

7.  Primate DRB genes from the DR3 and DR8 haplotypes contain ERV9 LTR elements at identical positions.

Authors:  A C Svensson; N Setterblad; S Sigurdardóttir; L Rask; G Andersson
Journal:  Immunogenetics       Date:  1995       Impact factor: 2.846

Review 8.  Evolution and biological significance of human retroelements.

Authors:  C Leib-Mösch; W Seifarth
Journal:  Virus Genes       Date:  1995       Impact factor: 2.332

9.  Molecular characterization and placental expression of HERV-W, a new human endogenous retrovirus family.

Authors:  J L Blond; F Besème; L Duret; O Bouton; F Bedin; H Perron; B Mandrand; F Mallet
Journal:  J Virol       Date:  1999-02       Impact factor: 5.103

10.  Characterization and genomic mapping of the ZNF80 locus: expression of this zinc-finger gene is driven by a solitary LTR of ERV9 endogenous retroviral family.

Authors:  A Di Cristofano; M Strazzullo; L Longo; G La Mantia
Journal:  Nucleic Acids Res       Date:  1995-08-11       Impact factor: 16.971
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