Literature DB >> 24752343

New kids on the block: novel informatics methods for natural product discovery.

Franziska Hufsky1, Kerstin Scheubert, Sebastian Böcker.   

Abstract

Covering: 2008 to 2014 Mass spectrometry is a key technology for the identification and structural elucidation of natural products. Manual interpretation of the resulting data is tedious and time-consuming, so methods for automated analysis are highly sought after. In this review, we focus on four recently developed methods for the detection and investigation of small molecules, namely MetFrag/MetFusion, ISIS, FingerID, and FT-BLAST. These methods have the potential to significantly advance the field of computational mass spectrometry for the research of natural products. For example, they may help with the dereplication of compounds at an early stage of the drug discovery process; that is, the detection of molecules that are identical or highly similar to known drugs or drug leads. Furthermore, when a potential drug lead has been determined, these tools may help to identify it and elucidate its structure.

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Year:  2014        PMID: 24752343     DOI: 10.1039/c3np70101h

Source DB:  PubMed          Journal:  Nat Prod Rep        ISSN: 0265-0568            Impact factor:   13.423


  21 in total

1.  Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics.

Authors:  Arpana Vaniya; Oliver Fiehn
Journal:  Trends Analyt Chem       Date:  2015-06-01       Impact factor: 12.296

Review 2.  The re-emergence of natural products for drug discovery in the genomics era.

Authors:  Alan L Harvey; RuAngelie Edrada-Ebel; Ronald J Quinn
Journal:  Nat Rev Drug Discov       Date:  2015-01-23       Impact factor: 84.694

Review 3.  Mass spectrometry tools and workflows for revealing microbial chemistry.

Authors:  Tal Luzzatto-Knaan; Alexey V Melnik; Pieter C Dorrestein
Journal:  Analyst       Date:  2015-08-07       Impact factor: 4.616

Review 4.  Comparative mass spectrometry-based metabolomics strategies for the investigation of microbial secondary metabolites.

Authors:  Brett C Covington; John A McLean; Brian O Bachmann
Journal:  Nat Prod Rep       Date:  2017-01-04       Impact factor: 13.423

Review 5.  Natural products as mediators of disease.

Authors:  Neha Garg; Tal Luzzatto-Knaan; Alexey V Melnik; Andrés Mauricio Caraballo-Rodríguez; Dimitrios J Floros; Daniel Petras; Rachel Gregor; Pieter C Dorrestein; Vanessa V Phelan
Journal:  Nat Prod Rep       Date:  2016-11-22       Impact factor: 13.423

6.  Using In Silico Fragmentation to Improve Routine Residue Screening in Complex Matrices.

Authors:  Anton Kaufmann; Patrick Butcher; Kathryn Maden; Stephan Walker; Mirjam Widmer
Journal:  J Am Soc Mass Spectrom       Date:  2017-09-12       Impact factor: 3.109

7.  Using MS-FINDER for identifying 19 natural products in the CASMI 2016 contest.

Authors:  Arpana Vaniya; Stephanie N Samra; Mine Palazoglu; Hiroshi Tsugawa; Oliver Fiehn
Journal:  Phytochem Lett       Date:  2016-12-09       Impact factor: 1.679

Review 8.  Identification of small molecules using accurate mass MS/MS search.

Authors:  Tobias Kind; Hiroshi Tsugawa; Tomas Cajka; Yan Ma; Zijuan Lai; Sajjan S Mehta; Gert Wohlgemuth; Dinesh Kumar Barupal; Megan R Showalter; Masanori Arita; Oliver Fiehn
Journal:  Mass Spectrom Rev       Date:  2017-04-24       Impact factor: 10.946

Review 9.  Modern mass spectrometry for synthetic biology and structure-based discovery of natural products.

Authors:  Matthew T Henke; Neil L Kelleher
Journal:  Nat Prod Rep       Date:  2016-07-04       Impact factor: 13.423

Review 10.  Trends in the application of high-resolution mass spectrometry for human biomonitoring: An analytical primer to studying the environmental chemical space of the human exposome.

Authors:  Syam S Andra; Christine Austin; Dhavalkumar Patel; Georgia Dolios; Mahmoud Awawda; Manish Arora
Journal:  Environ Int       Date:  2017-01-04       Impact factor: 9.621

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