Literature DB >> 24747990

Hot biological catalysis: isothermal titration calorimetry to characterize enzymatic reactions.

Luca Mazzei1, Stefano Ciurli1, Barbara Zambelli2.   

Abstract

Isothermal titration calorimetry (ITC) is a well-described technique that measures the heat released or absorbed during a chemical reaction, using it as an intrinsic probe to characterize virtually every chemical process. Nowadays, this technique is extensively applied to determine thermodynamic parameters of biomolecular binding equilibria. In addition, ITC has been demonstrated to be able of directly measuring kinetics and thermodynamic parameters (kcat, KM, ΔH) of enzymatic reactions, even though this application is still underexploited. As heat changes spontaneously occur during enzymatic catalysis, ITC does not require any modification or labeling of the system under analysis and can be performed in solution. Moreover, the method needs little amount of material. These properties make ITC an invaluable, powerful and unique tool to study enzyme kinetics in several applications, such as, for example, drug discovery. In this work an experimental ITC-based method to quantify kinetics and thermodynamics of enzymatic reactions is thoroughly described. This method is applied to determine kcat and KM of the enzymatic hydrolysis of urea by Canavalia ensiformis (jack bean) urease. Calculation of intrinsic molar enthalpy (ΔHint) of the reaction is performed. The values thus obtained are consistent with previous data reported in literature, demonstrating the reliability of the methodology.

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Year:  2014        PMID: 24747990      PMCID: PMC4162446          DOI: 10.3791/51487

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  18 in total

1.  Structure-based rationalization of urease inhibition by phosphate: novel insights into the enzyme mechanism.

Authors:  S Benini; W R Rypniewski; K S Wilson; S Ciurli; S Mangani
Journal:  J Biol Inorg Chem       Date:  2001-10       Impact factor: 3.358

Review 2.  Applications of isothermal titration calorimetry in pure and applied research--survey of the literature from 2010.

Authors:  Rajesh Ghai; Robert J Falconer; Brett M Collins
Journal:  J Mol Recognit       Date:  2012-01       Impact factor: 2.137

3.  Investigation of the enzymatic activity of the Na+,K+-ATPase via isothermal titration microcalorimetry.

Authors:  Raimund Noske; Flemming Cornelius; Ronald J Clarke
Journal:  Biochim Biophys Acta       Date:  2010-03-31

4.  Advantages of isothermal titration calorimetry for xylanase kinetics in comparison to chemical-reducing-end assays.

Authors:  Martin J Baumann; Leigh Murphy; Nina Lei; Kristian B R M Krogh; Kim Borch; Peter Westh
Journal:  Anal Biochem       Date:  2010-11-11       Impact factor: 3.365

Review 5.  Application of isothermal titration calorimetry in the biological sciences: things are heating up!

Authors:  John E Ladbury
Journal:  Biotechniques       Date:  2004-12       Impact factor: 1.993

6.  The competitive inhibition of the urease-catalyzed hydrolysis of urea by phosphate.

Authors:  K M HARMON; C NIEMANN
Journal:  J Biol Chem       Date:  1949-02       Impact factor: 5.157

7.  Determining enzyme kinetics via isothermal titration calorimetry.

Authors:  Neil A Demarse; Marie C Killian; Lee D Hansen; Colette F Quinn
Journal:  Methods Mol Biol       Date:  2013

8.  Chemistry of Ni2+ in urease: sensing, trafficking, and catalysis.

Authors:  Barbara Zambelli; Francesco Musiani; Stefano Benini; Stefano Ciurli
Journal:  Acc Chem Res       Date:  2011-05-04       Impact factor: 22.384

9.  High-affinity Ni2+ binding selectively promotes binding of Helicobacter pylori NikR to its target urease promoter.

Authors:  Barbara Zambelli; Alberto Danielli; Simona Romagnoli; Paolo Neyroz; Stefano Ciurli; Vincenzo Scarlato
Journal:  J Mol Biol       Date:  2008-09-04       Impact factor: 5.469

10.  Isothermal titration calorimetry for measuring macromolecule-ligand affinity.

Authors:  Michael R Duff; Jordan Grubbs; Elizabeth E Howell
Journal:  J Vis Exp       Date:  2011-09-07       Impact factor: 1.355

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  4 in total

1.  Fluoride inhibition of Sporosarcina pasteurii urease: structure and thermodynamics.

Authors:  Stefano Benini; Michele Cianci; Luca Mazzei; Stefano Ciurli
Journal:  J Biol Inorg Chem       Date:  2014-08-12       Impact factor: 3.358

2.  Quantitative Determination of Ca2+-binding to Ca2+-sensor Proteins by Isothermal Titration Calorimetry.

Authors:  Seher Abbas; Karl-Wilhelm Koch
Journal:  Bio Protoc       Date:  2020-04-05

3.  Thermodynamics and Kinetics of Glycolytic Reactions. Part I: Kinetic Modeling Based on Irreversible Thermodynamics and Validation by Calorimetry.

Authors:  Kristina Vogel; Thorsten Greinert; Monique Reichard; Christoph Held; Hauke Harms; Thomas Maskow
Journal:  Int J Mol Sci       Date:  2020-11-06       Impact factor: 5.923

4.  Thermodynamics and Kinetics of Glycolytic Reactions. Part II: Influence of Cytosolic Conditions on Thermodynamic State Variables and Kinetic Parameters.

Authors:  Kristina Vogel; Thorsten Greinert; Monique Reichard; Christoph Held; Hauke Harms; Thomas Maskow
Journal:  Int J Mol Sci       Date:  2020-10-25       Impact factor: 5.923

  4 in total

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