Literature DB >> 24747271

Statistical atlas construction via weighted functional boxplots.

Yi Hong1, Brad Davis2, J S Marron3, Roland Kwitt4, Nikhil Singh3, Julia S Kimbell3, Elizabeth Pitkin3, Richard Superfine3, Stephanie D Davis5, Carlton J Zdanski3, Marc Niethammer6.   

Abstract

Atlas-building from population data is widely used in medical imaging. However, the emphasis of atlas-building approaches is typically to estimate a spatial alignment to compute a mean/median shape or image based on population data. In this work, we focus on the statistical characterization of the population data, once spatial alignment has been achieved. We introduce and propose the use of the weighted functional boxplot. This allows the generalization of concepts such as the median, percentiles, or outliers to spaces where the data objects are functions, shapes, or images, and allows spatio-temporal atlas-building based on kernel regression. In our experiments, we demonstrate the utility of the approach to construct statistical atlases for pediatric upper airways and corpora callosa revealing their growth patterns. We also define a score system based on the pediatric airway atlas to quantitatively measure the severity of subglottic stenosis (SGS) in the airway. This scoring allows the classification of pre- and post-surgery SGS subjects and radiographically normal controls. Experimental results show the utility of atlas information to assess the effect of airway surgery in children.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Kernel regression; Pediatric upper airways; Statistical atlas-building; Weighted functional boxplots

Mesh:

Year:  2014        PMID: 24747271      PMCID: PMC4029168          DOI: 10.1016/j.media.2014.03.001

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  8 in total

Review 1.  The upper airway: congenital malformations.

Authors:  Samuel J Daniel
Journal:  Paediatr Respir Rev       Date:  2006-06-06       Impact factor: 2.726

2.  Multi-atlas based segmentation of brain images: atlas selection and its effect on accuracy.

Authors:  P Aljabar; R A Heckemann; A Hammers; J V Hajnal; D Rueckert
Journal:  Neuroimage       Date:  2009-02-23       Impact factor: 6.556

3.  Contour boxplots: a method for characterizing uncertainty in feature sets from simulation ensembles.

Authors:  Ross T Whitaker; Mahsa Mirzargar; Robert M Kirby
Journal:  IEEE Trans Vis Comput Graph       Date:  2013-12       Impact factor: 4.579

4.  Weighted functional boxplot with application to statistical atlas construction.

Authors:  Yi Hong; Brad Davis; J S Marron; Roland Kwitt; Marc Niethammer
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

5.  Manifold modeling for brain population analysis.

Authors:  Samuel Gerber; Tolga Tasdizen; P Thomas Fletcher; Sarang Joshi; Ross Whitaker
Journal:  Med Image Anal       Date:  2010-06-04       Impact factor: 8.545

6.  Proposed grading system for subglottic stenosis based on endotracheal tube sizes.

Authors:  C M Myer; D M O'Connor; R T Cotton
Journal:  Ann Otol Rhinol Laryngol       Date:  1994-04       Impact factor: 1.547

7.  Unbiased diffeomorphic atlas construction for computational anatomy.

Authors:  S Joshi; Brad Davis; Matthieu Jomier; Guido Gerig
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

8.  The geometric median on Riemannian manifolds with application to robust atlas estimation.

Authors:  P Thomas Fletcher; Suresh Venkatasubramanian; Sarang Joshi
Journal:  Neuroimage       Date:  2008-11-13       Impact factor: 6.556

  8 in total
  6 in total

1.  Shape analysis based on depth-ordering.

Authors:  Yi Hong; Yi Gao; Marc Niethammer; Sylvain Bouix
Journal:  Med Image Anal       Date:  2015-04-16       Impact factor: 8.545

2.  Relationship between degree of obstruction and airflow limitation in subglottic stenosis.

Authors:  Emily L Lin; Jonathan M Bock; Carlton J Zdanski; Julia S Kimbell; Guilherme J M Garcia
Journal:  Laryngoscope       Date:  2017-11-24       Impact factor: 3.325

3.  Pediatric sleep-related breathing disorders: advances in imaging and computational modeling.

Authors:  Sally L Davidson Ward; Raouf Amin; Raanan Arens; Stephanie Davis; Ephraim Gutmark; Richard Superfine; Brian Wong; Carlton Zdanski; Michael C K Khoo
Journal:  IEEE Pulse       Date:  2014 Sep-Oct       Impact factor: 0.924

4.  Analysis of circulating adipokines in patients newly diagnosed with solid cancer: Associations with measures of adiposity and tumor characteristics.

Authors:  Nehad Ayoub; Mohammad Alkhatatbeh; Malak Jibreel; Mera Ababneh
Journal:  Oncol Lett       Date:  2017-02-01       Impact factor: 2.967

5.  Quantitative assessment of the upper airway in infants and children with subglottic stenosis.

Authors:  Carlton Zdanski; Stephanie Davis; Yi Hong; Di Miao; Cory Quammen; Sorin Mitran; Brad Davis; Marc Niethammer; Julia Kimbell; Elizabeth Pitkin; Jason Fine; Lynn Fordham; Bradley Vaughn; Richard Superfine
Journal:  Laryngoscope       Date:  2015-07-30       Impact factor: 3.325

6.  Volumetric nasal cavity analysis in children with unilateral and bilateral cleft lip and palate.

Authors:  Zainab Farzal; Jonathan Walsh; Gabriella Lopes de Rezende Barbosa; Carlton J Zdanski; Stephanie D Davis; Richard Superfine; Luiz A Pimenta; Julia S Kimbell; Amelia Fischer Drake
Journal:  Laryngoscope       Date:  2015-08-12       Impact factor: 3.325

  6 in total

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