Literature DB >> 24744982

Functional analysis of the miRNA-mRNA interaction network in C. elegans.

Minh Than1, Min Han2.   

Abstract

MicroRNAs (miRNAs) are conserved small non-coding RNAs that typically regulate gene expression by binding to the 3' untranslated region (UTR) of mRNAs. Developmental functions of miRNAs have been extensively studied, but additional roles in various cellular processes remain to be understood. The investigation of the biological importance of individual miRNA-target interactions and the miRNA-target interaction network as a whole has been an exciting and challenging field of study. Here we briefly discuss the contributions our lab has made to our understanding of the physiological impact of this miRNA-network in C. elegans, in the context of recent studies in this advancing field. These studies have advanced our knowledge of the role of miRNAs in ensuring a robust cellular response to different physiological conditions. We briefly outline the genetic, biochemical, and computational strategies utilized to understand miRNA functions and discuss our recent study of the miRNA-interaction network in neurons and potential directions for future studies.

Entities:  

Keywords:  AIN-IP; ain-1; ain-2; dauer formation; gene expression; miRISC; microRNA; pathogen response

Year:  2013        PMID: 24744982      PMCID: PMC3917963          DOI: 10.4161/worm.26894

Source DB:  PubMed          Journal:  Worm        ISSN: 2162-4046


  21 in total

1.  Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2.

Authors:  Liang Zhang; Lei Ding; Tom H Cheung; Meng-Qiu Dong; Jun Chen; Aileen K Sewell; Xuedong Liu; John R Yates; Min Han
Journal:  Mol Cell       Date:  2007-11-30       Impact factor: 17.970

2.  A whole-genome RNAi Screen for C. elegans miRNA pathway genes.

Authors:  Devin H Parry; Jinling Xu; Gary Ruvkun
Journal:  Curr Biol       Date:  2007-11-20       Impact factor: 10.834

Review 3.  microRNA functions.

Authors:  Natascha Bushati; Stephen M Cohen
Journal:  Annu Rev Cell Dev Biol       Date:  2007       Impact factor: 13.827

4.  Effect of life history on microRNA expression during C. elegans development.

Authors:  Xantha Karp; Molly Hammell; Maria C Ow; Victor Ambros
Journal:  RNA       Date:  2011-02-22       Impact factor: 4.942

5.  Prediction of mammalian microRNA targets.

Authors:  Benjamin P Lewis; I-hung Shih; Matthew W Jones-Rhoades; David P Bartel; Christopher B Burge
Journal:  Cell       Date:  2003-12-26       Impact factor: 41.582

6.  mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts.

Authors:  Molly Hammell; Dang Long; Liang Zhang; Andrew Lee; C Steven Carmack; Min Han; Ye Ding; Victor Ambros
Journal:  Nat Methods       Date:  2008-09       Impact factor: 28.547

7.  Many families of C. elegans microRNAs are not essential for development or viability.

Authors:  Ezequiel Alvarez-Saavedra; H Robert Horvitz
Journal:  Curr Biol       Date:  2010-01-21       Impact factor: 10.834

8.  The C. elegans microRNA mir-71 acts in neurons to promote germline-mediated longevity through regulation of DAF-16/FOXO.

Authors:  Konstantinos Boulias; H Robert Horvitz
Journal:  Cell Metab       Date:  2012-04-04       Impact factor: 27.287

9.  Functional analysis of neuronal microRNAs in Caenorhabditis elegans dauer formation by combinational genetics and Neuronal miRISC immunoprecipitation.

Authors:  Minh T Than; Brian A Kudlow; Min Han
Journal:  PLoS Genet       Date:  2013-06-20       Impact factor: 5.917

10.  Most Caenorhabditis elegans microRNAs are individually not essential for development or viability.

Authors:  Eric A Miska; Ezequiel Alvarez-Saavedra; Allison L Abbott; Nelson C Lau; Andrew B Hellman; Shannon M McGonagle; David P Bartel; Victor R Ambros; H Robert Horvitz
Journal:  PLoS Genet       Date:  2007-12       Impact factor: 5.917

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  2 in total

1.  Dynamic mRNA and miRNA expression analysis in response to intermuscular bone development of blunt snout bream (Megalobrama amblycephala).

Authors:  Shi-Ming Wan; Shao-Kui Yi; Jia Zhong; Chun-Hong Nie; Ning-Nan Guan; Wei-Zhuo Zhang; Ze-Xia Gao
Journal:  Sci Rep       Date:  2016-08-03       Impact factor: 4.379

2.  High-Throughput Profiling of Caenorhabditis elegans Starvation-Responsive microRNAs.

Authors:  Laura Garcia-Segura; Cei Abreu-Goodger; Armando Hernandez-Mendoza; Tzvetanka D Dimitrova Dinkova; Luis Padilla-Noriega; Martha Elva Perez-Andrade; Juan Miranda-Rios
Journal:  PLoS One       Date:  2015-11-10       Impact factor: 3.240

  2 in total

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