Literature DB >> 24738471

Multispecies QSAR modeling for predicting the aquatic toxicity of diverse organic chemicals for regulatory toxicology.

Kunwar P Singh1, Shikha Gupta, Anuj Kumar, Dinesh Mohan.   

Abstract

The research aims to develop multispecies quantitative structure-activity relationships (QSARs) modeling tools capable of predicting the acute toxicity of diverse chemicals in various Organization for Economic Co-operation and Development (OECD) recommended test species of different trophic levels for regulatory toxicology. Accordingly, the ensemble learning (EL) approach based classification and regression QSAR models, such as decision treeboost (DTB) and decision tree forest (DTF) implementing stochastic gradient boosting and bagging algorithms were developed using the algae (P. subcapitata) experimental toxicity data for chemicals. The EL-QSAR models were successfully applied to predict toxicities of wide groups of chemicals in other test species including algae (S. obliguue), daphnia, fish, and bacteria. Structural diversity of the selected chemicals and those of the end-point toxicity data of five different test species were tested using the Tanimoto similarity index and Kruskal-Wallis (K-W) statistics. Predictive and generalization abilities of the constructed QSAR models were compared using statistical parameters. The developed QSAR models (DTB and DTF) yielded a considerably high classification accuracy in complete data of model building (algae) species (97.82%, 99.01%) and ranged between 92.50%-94.26% and 92.14%-94.12% in four test species, respectively, whereas regression QSAR models (DTB and DTF) rendered high correlation (R(2)) between the measured and model predicted toxicity end-point values and low mean-squared error in model building (algae) species (0.918, 0.15; 0.905, 0.21) and ranged between 0.575 and 0.672, 0.18-0.51 and 0.605-0.689 and 0.20-0.45 in four different test species. The developed QSAR models exhibited good predictive and generalization abilities in different test species of varied trophic levels and can be used for predicting the toxicities of new chemicals for screening and prioritization of chemicals for regulation.

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Year:  2014        PMID: 24738471     DOI: 10.1021/tx400371w

Source DB:  PubMed          Journal:  Chem Res Toxicol        ISSN: 0893-228X            Impact factor:   3.739


  8 in total

1.  Modeling the binding affinity of structurally diverse industrial chemicals to carbon using the artificial intelligence approaches.

Authors:  Shikha Gupta; Nikita Basant; Premanjali Rai; Kunwar P Singh
Journal:  Environ Sci Pollut Res Int       Date:  2015-07-11       Impact factor: 4.223

2.  Ensemble QSAR Modeling to Predict Multispecies Fish Toxicity Lethal Concentrations and Points of Departure.

Authors:  Thomas Y Sheffield; Richard S Judson
Journal:  Environ Sci Technol       Date:  2019-10-10       Impact factor: 9.028

3.  Modeling the toxicity of chemical pesticides in multiple test species using local and global QSTR approaches.

Authors:  Nikita Basant; Shikha Gupta; Kunwar P Singh
Journal:  Toxicol Res (Camb)       Date:  2015-12-10       Impact factor: 3.524

4.  Estimating sensory irritation potency of volatile organic chemicals using QSARs based on decision tree methods for regulatory purpose.

Authors:  Shikha Gupta; Nikita Basant; Kunwar P Singh
Journal:  Ecotoxicology       Date:  2015-02-24       Impact factor: 2.823

5.  Modeling the reactivities of hydroxyl radical and ozone towards atmospheric organic chemicals using quantitative structure-reactivity relationship approaches.

Authors:  Shikha Gupta; Nikita Basant; Dinesh Mohan; Kunwar P Singh
Journal:  Environ Sci Pollut Res Int       Date:  2016-04-04       Impact factor: 4.223

6.  QSAR modeling for predicting reproductive toxicity of chemicals in rats for regulatory purposes.

Authors:  Nikita Basant; Shikha Gupta; Kunwar P Singh
Journal:  Toxicol Res (Camb)       Date:  2016-04-26       Impact factor: 3.524

7.  New Models to Predict the Acute and Chronic Toxicities of Representative Species of the Main Trophic Levels of Aquatic Environments.

Authors:  Cosimo Toma; Claudia I Cappelli; Alberto Manganaro; Anna Lombardo; Jürgen Arning; Emilio Benfenati
Journal:  Molecules       Date:  2021-11-19       Impact factor: 4.411

8.  Mild and Efficient Synthesis of Diverse Organo-AuI -L Complexes in Green Solvents.

Authors:  Fredric J L Ingner; Ann-Cathrin Schmitt; Andreas Orthaber; Paul J Gates; Lukasz T Pilarski
Journal:  ChemSusChem       Date:  2020-03-03       Impact factor: 8.928

  8 in total

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