Literature DB >> 30090350

Modeling the toxicity of chemical pesticides in multiple test species using local and global QSTR approaches.

Nikita Basant1, Shikha Gupta2, Kunwar P Singh2.   

Abstract

The safety assessment processes require the toxicity data of chemicals in multiple test species and thus, emphasize the need for computational methods capable of toxicity prediction in multiple test species. Pesticides are designed toxic substances and find extensive applications worldwide. In this study, we have established local and global QSTR (quantitative structure-toxicity relationship) and ISC QSAAR (interspecies correlation quantitative structure activity-activity relationship) models for predicting the toxicities of pesticides in multiple aquatic test species using the toxicity data in crustacean (Daphnia magna, Americamysis bahia, Gammarus fasciatus, and Penaeus duorarum) and fish (Oncorhynchus mykiss and Lepomis macrochirus) species in accordance with the OECD guidelines. The ensemble learning based QSTR models (decision tree forest, DTF and decision tree boost, DTB) were constructed and validated using several statistical coefficients derived on the test data. In all the QSTR and QSAAR models, Log P was an important predictor. The constructed local, global and interspecies QSAAR models yielded high correlations (R2) of >0.941; >0.943 and >0.826, respectively between the measured and model predicted endpoint toxicity values in the test data. The performances of the local and global QSTR models were comparable. Furthermore, the chemical applicability domains of these QSTR/QSAAR models were determined using the leverage and standardization approaches. The results suggest for the appropriateness of the developed QSTR/QSAAR models to reliably predict the aquatic toxicity of structurally diverse pesticides in multiple test species and can be used for the screening and prioritization of new pesticides.

Entities:  

Year:  2015        PMID: 30090350      PMCID: PMC6060685          DOI: 10.1039/c5tx00321k

Source DB:  PubMed          Journal:  Toxicol Res (Camb)        ISSN: 2045-452X            Impact factor:   3.524


  48 in total

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2.  Structure based model for the prediction of phospholipidosis induction potential of small molecules.

Authors:  Hongmao Sun; Sampada Shahane; Menghang Xia; Christopher P Austin; Ruili Huang
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Journal:  Altern Lab Anim       Date:  2005-04       Impact factor: 1.303

4.  y-Randomization and its variants in QSPR/QSAR.

Authors:  Christoph Rücker; Gerta Rücker; Markus Meringer
Journal:  J Chem Inf Model       Date:  2007-09-20       Impact factor: 4.956

Review 5.  Directions in QSAR modeling for regulatory uses in OECD member countries, EU and in Russia.

Authors:  Natalja Fjodorova; Marjana Novich; Marjan Vrachko; Vjacheslav Smirnov; Nina Kharchevnikova; Zoya Zholdakova; Sergei Novikov; Natalja Skvortsova; Dmitrii Filimonov; Vladimir Poroikov; Emilio Benfenati
Journal:  J Environ Sci Health C Environ Carcinog Ecotoxicol Rev       Date:  2008 Apr-Jun       Impact factor: 3.781

6.  Formation of mechanistic categories and local models to facilitate the prediction of toxicity.

Authors:  Mark T D Cronin; Steven J Enoch; Mark Hewitt; Judith C Madden
Journal:  ALTEX       Date:  2011       Impact factor: 6.043

7.  Predicting aquatic toxicities of chemical pesticides in multiple test species using nonlinear QSTR modeling approaches.

Authors:  Nikita Basant; Shikha Gupta; Kunwar P Singh
Journal:  Chemosphere       Date:  2015-07-02       Impact factor: 7.086

Review 8.  Biodiversity loss and its impact on humanity.

Authors:  Bradley J Cardinale; J Emmett Duffy; Andrew Gonzalez; David U Hooper; Charles Perrings; Patrick Venail; Anita Narwani; Georgina M Mace; David Tilman; David A Wardle; Ann P Kinzig; Gretchen C Daily; Michel Loreau; James B Grace; Anne Larigauderie; Diane S Srivastava; Shahid Naeem
Journal:  Nature       Date:  2012-06-06       Impact factor: 49.962

9.  Development and validation of theoretical linear solvation energy relationship models for toxicity prediction to fathead minnow (Pimephales promelas).

Authors:  Felichesmi Lyakurwa; Xianhai Yang; Xuehua Li; Xianliang Qiao; Jingwen Chen
Journal:  Chemosphere       Date:  2013-11-09       Impact factor: 7.086

10.  Development of in silico models for predicting LSER molecular parameters and for acute toxicity prediction to fathead minnow (Pimephales promelas).

Authors:  Felichesmi Selestini Lyakurwa; Xianhai Yang; Xuehua Li; Xianliang Qiao; Jingwen Chen
Journal:  Chemosphere       Date:  2014-04-06       Impact factor: 7.086

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  3 in total

1.  QSAR modeling for predicting reproductive toxicity of chemicals in rats for regulatory purposes.

Authors:  Nikita Basant; Shikha Gupta; Kunwar P Singh
Journal:  Toxicol Res (Camb)       Date:  2016-04-26       Impact factor: 3.524

2.  The kernel-weighted local polynomial regression (KwLPR) approach: an efficient, novel tool for development of QSAR/QSAAR toxicity extrapolation models.

Authors:  Agnieszka Gajewicz-Skretna; Supratik Kar; Magdalena Piotrowska; Jerzy Leszczynski
Journal:  J Cheminform       Date:  2021-02-12       Impact factor: 5.514

3.  Predicting the membrane permeability of organic fluorescent probes by the deep neural network based lipophilicity descriptor DeepFl-LogP.

Authors:  Kareem Soliman; Florian Grimm; Christian A Wurm; Alexander Egner
Journal:  Sci Rep       Date:  2021-03-26       Impact factor: 4.379

  3 in total

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