Literature DB >> 24735881

Loss of Tet enzymes compromises proper differentiation of embryonic stem cells.

Meelad M Dawlaty1, Achim Breiling2, Thuc Le3, M Inmaculada Barrasa1, Günter Raddatz2, Qing Gao1, Benjamin E Powell1, Albert W Cheng4, Kym F Faull5, Frank Lyko2, Rudolf Jaenisch6.   

Abstract

Tet enzymes (Tet1/2/3) convert 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC) and are dynamically expressed during development. Whereas loss of individual Tet enzymes or combined deficiency of Tet1/2 allows for embryogenesis, the effect of complete loss of Tet activity and 5hmC marks in development is not established. We have generated Tet1/2/3 triple-knockout (TKO) mouse embryonic stem cells (ESCs) and examined their developmental potential. Combined deficiency of all three Tets depleted 5hmC and impaired ESC differentiation, as seen in poorly differentiated TKO embryoid bodies (EBs) and teratomas. Consistent with impaired differentiation, TKO ESCs contributed poorly to chimeric embryos, a defect rescued by Tet1 reexpression, and could not support embryonic development. Global gene-expression and methylome analyses of TKO EBs revealed promoter hypermethylation and deregulation of genes implicated in embryonic development and differentiation. These findings suggest a requirement for Tet- and 5hmC-mediated DNA demethylation in proper regulation of gene expression during ESC differentiation and development.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 24735881      PMCID: PMC4035811          DOI: 10.1016/j.devcel.2014.03.003

Source DB:  PubMed          Journal:  Dev Cell        ISSN: 1534-5807            Impact factor:   12.270


  33 in total

1.  Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.

Authors:  Yu-Fei He; Bin-Zhong Li; Zheng Li; Peng Liu; Yang Wang; Qingyu Tang; Jianping Ding; Yingying Jia; Zhangcheng Chen; Lin Li; Yan Sun; Xiuxue Li; Qing Dai; Chun-Xiao Song; Kangling Zhang; Chuan He; Guo-Liang Xu
Journal:  Science       Date:  2011-08-04       Impact factor: 47.728

2.  Deletion of Tet2 in mice leads to dysregulated hematopoietic stem cells and subsequent development of myeloid malignancies.

Authors:  Zhe Li; Xiaoqiang Cai; Chen-Leng Cai; Jiapeng Wang; Wenyong Zhang; Bruce E Petersen; Feng-Chun Yang; Mingjiang Xu
Journal:  Blood       Date:  2011-07-29       Impact factor: 22.113

3.  Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development.

Authors:  Meelad M Dawlaty; Achim Breiling; Thuc Le; Günter Raddatz; M Inmaculada Barrasa; Albert W Cheng; Qing Gao; Benjamin E Powell; Zhe Li; Mingjiang Xu; Kym F Faull; Frank Lyko; Rudolf Jaenisch
Journal:  Dev Cell       Date:  2013-01-24       Impact factor: 12.270

4.  Epigenomic analysis of multilineage differentiation of human embryonic stem cells.

Authors:  Wei Xie; Matthew D Schultz; Ryan Lister; Zhonggang Hou; Nisha Rajagopal; Pradipta Ray; John W Whitaker; Shulan Tian; R David Hawkins; Danny Leung; Hongbo Yang; Tao Wang; Ah Young Lee; Scott A Swanson; Jiuchun Zhang; Yun Zhu; Audrey Kim; Joseph R Nery; Mark A Urich; Samantha Kuan; Chia-an Yen; Sarit Klugman; Pengzhi Yu; Kran Suknuntha; Nicholas E Propson; Huaming Chen; Lee E Edsall; Ulrich Wagner; Yan Li; Zhen Ye; Ashwinikumar Kulkarni; Zhenyu Xuan; Wen-Yu Chung; Neil C Chi; Jessica E Antosiewicz-Bourget; Igor Slukvin; Ron Stewart; Michael Q Zhang; Wei Wang; James A Thomson; Joseph R Ecker; Bing Ren
Journal:  Cell       Date:  2013-05-09       Impact factor: 41.582

5.  Transcriptional and epigenetic dynamics during specification of human embryonic stem cells.

Authors:  Casey A Gifford; Michael J Ziller; Hongcang Gu; Cole Trapnell; Julie Donaghey; Alexander Tsankov; Alex K Shalek; David R Kelley; Alexander A Shishkin; Robbyn Issner; Xiaolan Zhang; Michael Coyne; Jennifer L Fostel; Laurie Holmes; Jim Meldrim; Mitchell Guttman; Charles Epstein; Hongkun Park; Oliver Kohlbacher; John Rinn; Andreas Gnirke; Eric S Lander; Bradley E Bernstein; Alexander Meissner
Journal:  Cell       Date:  2013-05-09       Impact factor: 41.582

6.  Hydroxylation of 5-methylcytosine by TET2 maintains the active state of the mammalian HOXA cluster.

Authors:  Michael T Bocker; Francesca Tuorto; Günter Raddatz; Tanja Musch; Feng-Chun Yang; Mingjiang Xu; Frank Lyko; Achim Breiling
Journal:  Nat Commun       Date:  2012-05-08       Impact factor: 14.919

7.  Methylome analysis using MeDIP-seq with low DNA concentrations.

Authors:  Oluwatosin Taiwo; Gareth A Wilson; Tiffany Morris; Stefanie Seisenberger; Wolf Reik; Daniel Pearce; Stephan Beck; Lee M Butcher
Journal:  Nat Protoc       Date:  2012-03-08       Impact factor: 13.491

8.  5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells.

Authors:  Hume Stroud; Suhua Feng; Shannon Morey Kinney; Sriharsa Pradhan; Steven E Jacobsen
Journal:  Genome Biol       Date:  2011-06-20       Impact factor: 13.583

9.  Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.

Authors:  Shinsuke Ito; Li Shen; Qing Dai; Susan C Wu; Leonard B Collins; James A Swenberg; Chuan He; Yi Zhang
Journal:  Science       Date:  2011-07-21       Impact factor: 47.728

10.  Synergistic mechanisms of DNA demethylation during transition to ground-state pluripotency.

Authors:  Jamie A Hackett; Sabine Dietmann; Kazuhiro Murakami; Thomas A Down; Harry G Leitch; M Azim Surani
Journal:  Stem Cell Reports       Date:  2013-12-17       Impact factor: 7.765

View more
  141 in total

1.  Arsenite Targets the Zinc Finger Domains of Tet Proteins and Inhibits Tet-Mediated Oxidation of 5-Methylcytosine.

Authors:  Shuo Liu; Ji Jiang; Lin Li; Nicholas J Amato; Zi Wang; Yinsheng Wang
Journal:  Environ Sci Technol       Date:  2015-09-23       Impact factor: 9.028

2.  Tex10 Coordinates Epigenetic Control of Super-Enhancer Activity in Pluripotency and Reprogramming.

Authors:  Junjun Ding; Xin Huang; Ningyi Shao; Hongwei Zhou; Dung-Fang Lee; Francesco Faiola; Miguel Fidalgo; Diana Guallar; Arven Saunders; Pavel V Shliaha; Hailong Wang; Avinash Waghray; Dmitri Papatsenko; Carlos Sánchez-Priego; Dan Li; Ye Yuan; Ihor R Lemischka; Li Shen; Kevin Kelley; Haiteng Deng; Xiaohua Shen; Jianlong Wang
Journal:  Cell Stem Cell       Date:  2015-04-30       Impact factor: 24.633

3.  Dynamic Enhancer DNA Methylation as Basis for Transcriptional and Cellular Heterogeneity of ESCs.

Authors:  Yuelin Song; Patrick R van den Berg; Styliani Markoulaki; Frank Soldner; Alessandra Dall'Agnese; Jonathan E Henninger; Jesse Drotar; Nicholas Rosenau; Malkiel A Cohen; Richard A Young; Stefan Semrau; Yonatan Stelzer; Rudolf Jaenisch
Journal:  Mol Cell       Date:  2019-08-15       Impact factor: 17.970

Review 4.  The Mechanisms of Generation, Recognition, and Erasure of DNA 5-Methylcytosine and Thymine Oxidations.

Authors:  Hideharu Hashimoto; Xing Zhang; Paula M Vertino; Xiaodong Cheng
Journal:  J Biol Chem       Date:  2015-07-07       Impact factor: 5.157

Review 5.  Epigenetic control of myeloid cell differentiation, identity and function.

Authors:  Damiana Álvarez-Errico; Roser Vento-Tormo; Michael Sieweke; Esteban Ballestar
Journal:  Nat Rev Immunol       Date:  2015-01       Impact factor: 53.106

Review 6.  The interplay of epigenetic marks during stem cell differentiation and development.

Authors:  Yaser Atlasi; Hendrik G Stunnenberg
Journal:  Nat Rev Genet       Date:  2017-08-14       Impact factor: 53.242

7.  Role of transcription complexes in the formation of the basal methylation pattern in early development.

Authors:  Razi Greenfield; Amalia Tabib; Ilana Keshet; Joshua Moss; Ofra Sabag; Alon Goren; Howard Cedar
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-26       Impact factor: 11.205

8.  DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain.

Authors:  Yasuhiro Kyono; Samhitha Raj; Christopher J Sifuentes; Nicolas Buisine; Laurent Sachs; Robert J Denver
Journal:  Dev Biol       Date:  2020-03-31       Impact factor: 3.582

9.  Cyclic DNA remethylation following active demethylation at euchromatic regions in mouse embryonic stem cells.

Authors:  Musashi Kubiura-Ichimaru; Takamasa Ito; Louis Lefebvre; Masako Tada
Journal:  Chromosome Res       Date:  2020-11-17       Impact factor: 5.239

10.  Overlapping Requirements for Tet2 and Tet3 in Normal Development and Hematopoietic Stem Cell Emergence.

Authors:  Cheng Li; Yahui Lan; Lianna Schwartz-Orbach; Evgenia Korol; Mamta Tahiliani; Todd Evans; Mary G Goll
Journal:  Cell Rep       Date:  2015-08-06       Impact factor: 9.423

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.