Literature DB >> 25936917

Tex10 Coordinates Epigenetic Control of Super-Enhancer Activity in Pluripotency and Reprogramming.

Junjun Ding1, Xin Huang1, Ningyi Shao2, Hongwei Zhou1, Dung-Fang Lee1, Francesco Faiola1, Miguel Fidalgo1, Diana Guallar1, Arven Saunders3, Pavel V Shliaha4, Hailong Wang5, Avinash Waghray3, Dmitri Papatsenko1, Carlos Sánchez-Priego1, Dan Li3, Ye Yuan3, Ihor R Lemischka6, Li Shen2, Kevin Kelley7, Haiteng Deng8, Xiaohua Shen8, Jianlong Wang9.   

Abstract

Super-enhancers (SEs) are large clusters of transcriptional enhancers that are co-occupied by multiple lineage-specific transcription factors driving expression of genes that define cell identity. In embryonic stem cells (ESCs), SEs are highly enriched for the core pluripotency factors Oct4, Sox2, and Nanog. In this study, we sought to dissect the molecular control mechanism of SE activity in pluripotency and reprogramming. Starting from a protein interaction network surrounding Sox2, we identified Tex10 as a key pluripotency factor that plays a functionally significant role in ESC self-renewal, early embryo development, and reprogramming. Tex10 is enriched at SEs in a Sox2-dependent manner and coordinates histone acetylation and DNA demethylation at SEs. Tex10 activity is also important for pluripotency and reprogramming in human cells. Our study therefore highlights Tex10 as a core component of the pluripotency network and sheds light on its role in epigenetic control of SE activity for cell fate determination.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 25936917      PMCID: PMC4458159          DOI: 10.1016/j.stem.2015.04.001

Source DB:  PubMed          Journal:  Cell Stem Cell        ISSN: 1875-9777            Impact factor:   24.633


  53 in total

1.  Super-enhancers in the control of cell identity and disease.

Authors:  Denes Hnisz; Brian J Abraham; Tong Ihn Lee; Ashley Lau; Violaine Saint-André; Alla A Sigova; Heather A Hoke; Richard A Young
Journal:  Cell       Date:  2013-10-10       Impact factor: 41.582

2.  5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation.

Authors:  Gary C Hon; Chun-Xiao Song; Tingting Du; Fulai Jin; Siddarth Selvaraj; Ah Young Lee; Chia-An Yen; Zhen Ye; Shi-Qing Mao; Bang-An Wang; Samantha Kuan; Lee E Edsall; Boxuan Simen Zhao; Guo-Liang Xu; Chuan He; Bing Ren
Journal:  Mol Cell       Date:  2014-09-25       Impact factor: 17.970

Review 3.  Modification of enhancer chromatin: what, how, and why?

Authors:  Eliezer Calo; Joanna Wysocka
Journal:  Mol Cell       Date:  2013-03-07       Impact factor: 17.970

4.  Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells.

Authors:  Yun Huang; Lukas Chavez; Xing Chang; Xue Wang; William A Pastor; Jinsuk Kang; Jorge A Zepeda-Martínez; Utz J Pape; Steven E Jacobsen; Bjoern Peters; Anjana Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-13       Impact factor: 11.205

5.  An extended transcriptional network for pluripotency of embryonic stem cells.

Authors:  Jonghwan Kim; Jianlin Chu; Xiaohua Shen; Jianlong Wang; Stuart H Orkin
Journal:  Cell       Date:  2008-03-21       Impact factor: 41.582

6.  The dyskerin ribonucleoprotein complex as an OCT4/SOX2 coactivator in embryonic stem cells.

Authors:  Yick W Fong; Jaclyn J Ho; Carla Inouye; Robert Tjian
Journal:  Elife       Date:  2014-11-19       Impact factor: 8.140

Review 7.  The cell cycle and pluripotency.

Authors:  Christopher Hindley; Anna Philpott
Journal:  Biochem J       Date:  2013-04-15       Impact factor: 3.857

8.  A direct physical interaction between Nanog and Sox2 regulates embryonic stem cell self-renewal.

Authors:  Alessia Gagliardi; Nicholas P Mullin; Zi Ying Tan; Douglas Colby; Anastasia I Kousa; Florian Halbritter; Jason T Weiss; Anastasia Felker; Karel Bezstarosti; Rebecca Favaro; Jeroen Demmers; Silvia K Nicolis; Simon R Tomlinson; Raymond A Poot; Ian Chambers
Journal:  EMBO J       Date:  2013-07-26       Impact factor: 11.598

9.  MBD3/NuRD facilitates induction of pluripotency in a context-dependent manner.

Authors:  Rodrigo L dos Santos; Luca Tosti; Aliaksandra Radzisheuskaya; Isabel M Caballero; Keisuke Kaji; Brian Hendrich; José C R Silva
Journal:  Cell Stem Cell       Date:  2014-05-15       Impact factor: 24.633

10.  Role of Tet proteins in enhancer activity and telomere elongation.

Authors:  Falong Lu; Yuting Liu; Lan Jiang; Shinpei Yamaguchi; Yi Zhang
Journal:  Genes Dev       Date:  2014-09-15       Impact factor: 11.361

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  42 in total

1.  Network plasticity of pluripotency transcription factors in embryonic stem cells.

Authors:  Adam Filipczyk; Carsten Marr; Simon Hastreiter; Justin Feigelman; Michael Schwarzfischer; Philipp S Hoppe; Dirk Loeffler; Konstantinos D Kokkaliaris; Max Endele; Bernhard Schauberger; Oliver Hilsenbeck; Stavroula Skylaki; Jan Hasenauer; Konstantinos Anastassiadis; Fabian J Theis; Timm Schroeder
Journal:  Nat Cell Biol       Date:  2015-09-21       Impact factor: 28.824

2.  The SIN3A/HDAC Corepressor Complex Functionally Cooperates with NANOG to Promote Pluripotency.

Authors:  Arven Saunders; Xin Huang; Miguel Fidalgo; Michael H Reimer; Francesco Faiola; Junjun Ding; Carlos Sánchez-Priego; Diana Guallar; Carmen Sáenz; Dan Li; Jianlong Wang
Journal:  Cell Rep       Date:  2017-02-14       Impact factor: 9.423

Review 3.  Ground rules of the pluripotency gene regulatory network.

Authors:  Mo Li; Juan Carlos Izpisua Belmonte
Journal:  Nat Rev Genet       Date:  2017-01-03       Impact factor: 53.242

4.  DUX-miR-344-ZMYM2-Mediated Activation of MERVL LTRs Induces a Totipotent 2C-like State.

Authors:  Fan Yang; Xin Huang; Ruge Zang; Jiayu Chen; Miguel Fidalgo; Carlos Sanchez-Priego; Jihong Yang; Alexander Caichen; Fanglin Ma; Todd Macfarlan; Huayan Wang; Shaorong Gao; Hongwei Zhou; Jianlong Wang
Journal:  Cell Stem Cell       Date:  2020-02-06       Impact factor: 24.633

Review 5.  Mechanisms of gene regulation in human embryos and pluripotent stem cells.

Authors:  Thorold W Theunissen; Rudolf Jaenisch
Journal:  Development       Date:  2017-12-15       Impact factor: 6.868

6.  The Elongation Factor Spt6 Maintains ESC Pluripotency by Controlling Super-Enhancers and Counteracting Polycomb Proteins.

Authors:  A Hongjun Wang; Aster H Juan; Kyung Dae Ko; Pei-Fang Tsai; Hossein Zare; Stefania Dell'Orso; Vittorio Sartorelli
Journal:  Mol Cell       Date:  2017-10-12       Impact factor: 17.970

7.  SEA: a super-enhancer archive.

Authors:  Yanjun Wei; Shumei Zhang; Shipeng Shang; Bin Zhang; Song Li; Xinyu Wang; Fang Wang; Jianzhong Su; Qiong Wu; Hongbo Liu; Yan Zhang
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

8.  Zfp281 Coordinates Opposing Functions of Tet1 and Tet2 in Pluripotent States.

Authors:  Miguel Fidalgo; Xin Huang; Diana Guallar; Carlos Sanchez-Priego; Victor Julian Valdes; Arven Saunders; Junjun Ding; Wen-Shu Wu; Carlos Clavel; Jianlong Wang
Journal:  Cell Stem Cell       Date:  2016-06-23       Impact factor: 24.633

Review 9.  Chromatin regulation and dynamics in stem cells.

Authors:  David C Klein; Sarah J Hainer
Journal:  Curr Top Dev Biol       Date:  2019-12-30       Impact factor: 4.897

10.  Polycomb group RING finger proteins 3/5 activate transcription via an interaction with the pluripotency factor Tex10 in embryonic stem cells.

Authors:  Wukui Zhao; Yikai Huang; Jingzi Zhang; Mengjie Liu; Haijing Ji; Congcong Wang; Ning Cao; Chaojun Li; Yin Xia; Qing Jiang; Jinzhong Qin
Journal:  J Biol Chem       Date:  2017-10-20       Impact factor: 5.157

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