Literature DB >> 33764773

Opportunities and Limitations for Assigning Relative Configurations of Antibacterial Bislactones using GIAO NMR Shift Calculations.

Sonja L Knowles1, Christopher D Roberts1, Mario Augustinović1, Laura Flores-Bocanegra1, Huzefa A Raja1, Kimberly N Heath-Borrero2, Joanna E Burdette2, Joseph O Falkinham Iii3, Cedric J Pearce4, Nicholas H Oberlies1.   

Abstract

Four new bislactones, dihydroacremonol (1), clonostachyone (2), acremodiol B (3), and acremodiol C (4), along with one known compound, hymeglusin (5), were isolated from cultures of two fungal strains (MSX59876 and MSX59260). Both strains were identified based on phylogenetic analysis of molecular data as Clonostachys spp.; yet, they biosynthesized a suite of related, but different, secondary metabolites. Given the challenges associated with elucidating the structures and configurations of bislactones, GIAO NMR calculations were tested as a complement to traditional NMR and HRESIMS experiments. Fortuitously, the enantiomer of the new natural product (4) was known as a synthetic compound, and the predicted configuration from GIAO NMR calculations (i.e., for the relative configuration) and optical rotation calculations (i.e., for the absolute configuration) matched those of the synthesis product. These results engendered confidence in using similar procedures, particularly the mixture of GIAO NMR shift calculations coupled with an orthogonal technique, to predict the configuration of 1-3; however, there were important limitations, which are discussed for each of these. The metabolites displayed antimicrobial activities, with compounds 1 and 4 being the most potent against Staphylococcus aureus with MICs of 1 and 4 μg/mL, respectively.

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Year:  2021        PMID: 33764773      PMCID: PMC8108483          DOI: 10.1021/acs.jnatprod.0c01309

Source DB:  PubMed          Journal:  J Nat Prod        ISSN: 0163-3864            Impact factor:   4.050


  40 in total

1.  Structure validation of natural products by quantum-mechanical GIAO calculations of 13C NMR chemical shifts.

Authors:  Giampaolo Barone; Luigi Gomez-Paloma; Dario Duca; Arturo Silvestri; Raffaele Riccio; Giuseppe Bifulco
Journal:  Chemistry       Date:  2002-07-15       Impact factor: 5.236

2.  Beyond DP4: an Improved Probability for the Stereochemical Assignment of Isomeric Compounds using Quantum Chemical Calculations of NMR Shifts.

Authors:  Nicolás Grimblat; María M Zanardi; Ariel M Sarotti
Journal:  J Org Chem       Date:  2015-12-10       Impact factor: 4.354

3.  Bioactivity profiling using HPLC/microtiter-plate analysis: application to a New Zealand marine alga-derived fungus, Gliocladium sp.

Authors:  Gerhard Lang; Maya I Mitova; Gill Ellis; Sonia van der Sar; Richard K Phipps; John W Blunt; Nicholas J Cummings; Anthony L J Cole; Murray H G Munro
Journal:  J Nat Prod       Date:  2006-04       Impact factor: 4.050

4.  Application of electronic circular dichroism in configurational and conformational analysis of organic compounds.

Authors:  Nina Berova; Lorenzo Di Bari; Gennaro Pescitelli
Journal:  Chem Soc Rev       Date:  2007-02-05       Impact factor: 54.564

5.  Efficient Protocol for Accurately Calculating 13C Chemical Shifts of Conformationally Flexible Natural Products: Scope, Assessment, and Limitations.

Authors:  Warren Hehre; Phillip Klunzinger; Bernard Deppmeier; Andy Driessen; Noritaka Uchida; Masaru Hashimoto; Eri Fukushi; Yusuke Takata
Journal:  J Nat Prod       Date:  2019-07-19       Impact factor: 4.050

6.  SpecDis: quantifying the comparison of calculated and experimental electronic circular dichroism spectra.

Authors:  Torsten Bruhn; Anu Schaumlöffel; Yasmin Hemberger; Gerhard Bringmann
Journal:  Chirality       Date:  2013-04       Impact factor: 2.437

7.  Chemoinformatic expedition of the chemical space of fungal products.

Authors:  Mariana González-Medina; Fernando D Prieto-Martínez; J Jesús Naveja; Oscar Méndez-Lucio; Tamam El-Elimat; Cedric J Pearce; Nicholas H Oberlies; Mario Figueroa; José L Medina-Franco
Journal:  Future Med Chem       Date:  2016-08-03       Impact factor: 3.808

8.  Chemical Diversity of Metabolites from Fungi, Cyanobacteria, and Plants Relative to FDA-Approved Anticancer Agents.

Authors:  Tamam El-Elimat; Xiaoli Zhang; David Jarjoura; Franklin J Moy; Jimmy Orjala; A Douglas Kinghorn; Cedric J Pearce; Nicholas H Oberlies
Journal:  ACS Med Chem Lett       Date:  2012-07-12       Impact factor: 4.345

9.  High-resolution MS, MS/MS, and UV database of fungal secondary metabolites as a dereplication protocol for bioactive natural products.

Authors:  Tamam El-Elimat; Mario Figueroa; Brandie M Ehrmann; Nadja B Cech; Cedric J Pearce; Nicholas H Oberlies
Journal:  J Nat Prod       Date:  2013-08-16       Impact factor: 4.050

10.  Greensporones: resorcylic acid lactones from an aquatic Halenospora sp.

Authors:  Tamam El-Elimat; Huzefa A Raja; Cynthia S Day; Wei-Lun Chen; Steven M Swanson; Nicholas H Oberlies
Journal:  J Nat Prod       Date:  2014-08-05       Impact factor: 4.050

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  1 in total

1.  Polychlorinated cyclopentenes from a marine derived Periconia sp. (strain G1144).

Authors:  Kristóf B Cank; Robert A Shepherd; Sonja L Knowles; Manuel Rangel-Grimaldo; Huzefa A Raja; Zoie L Bunch; Nadja B Cech; Christopher A Rice; Dennis E Kyle; Joseph O Falkinham; Joanna E Burdette; Nicholas H Oberlies
Journal:  Phytochemistry       Date:  2022-04-11       Impact factor: 4.004

  1 in total

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