Literature DB >> 24709164

Heavy enzymes--experimental and computational insights in enzyme dynamics.

Katarzyna Swiderek1, J Javier Ruiz-Pernía2, Vicent Moliner3, Iñaki Tuñón4.   

Abstract

The role of protein motions in the chemical step of enzyme-catalyzed reactions is the subject of an open debate in the scientific literature. The systematic use of isotopically substituted enzymes has been revealed as a useful tool to quantify the role of these motions. According to the Born-Oppenheimer approximation, changing the mass of the protein does not change the forces acting on the system but alters the frequencies of the protein motions, which in turn can affect the rate constant. Experimental and theoretical studies carried out in this field are presented in this article and discussed in the framework of Transition State Theory.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24709164     DOI: 10.1016/j.cbpa.2014.03.005

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  20 in total

1.  Benchmarking Quantum Mechanics/Molecular Mechanics (QM/MM) Methods on the Thymidylate Synthase-Catalyzed Hydride Transfer.

Authors:  Katarzyna Świderek; Kemel Arafet; Amnon Kohen; Vicent Moliner
Journal:  J Chem Theory Comput       Date:  2017-02-22       Impact factor: 6.006

2.  Transition States and transition state analogue interactions with enzymes.

Authors:  Vern L Schramm
Journal:  Acc Chem Res       Date:  2015-04-07       Impact factor: 22.384

3.  Dynamic and Electrostatic Effects on the Reaction Catalyzed by HIV-1 Protease.

Authors:  Agnieszka Krzemińska; Vicent Moliner; Katarzyna Świderek
Journal:  J Am Chem Soc       Date:  2016-12-09       Impact factor: 15.419

4.  Modulating Enzyme Catalysis through Mutations Designed to Alter Rapid Protein Dynamics.

Authors:  Ioanna Zoi; Javier Suarez; Dimitri Antoniou; Scott A Cameron; Vern L Schramm; Steven D Schwartz
Journal:  J Am Chem Soc       Date:  2016-03-08       Impact factor: 15.419

5.  Role of Protein Motions in Catalysis by Formate Dehydrogenase.

Authors:  Dimitri Antoniou; Steven D Schwartz
Journal:  J Phys Chem B       Date:  2020-10-16       Impact factor: 2.991

Review 6.  Engineered control of enzyme structural dynamics and function.

Authors:  David D Boehr; Rebecca N D'Amico; Kathleen F O'Rourke
Journal:  Protein Sci       Date:  2018-02-16       Impact factor: 6.725

7.  Protein Conformational Landscapes and Catalysis. Influence of Active Site Conformations in the Reaction Catalyzed by L-Lactate Dehydrogenase.

Authors:  Katarzyna Świderek; Iñaki Tuñón; Sergio Martí; Vicent Moliner
Journal:  ACS Catal       Date:  2015-01-07       Impact factor: 13.084

Review 8.  Promoting Vibrations and the Function of Enzymes. Emerging Theoretical and Experimental Convergence.

Authors:  Vern L Schramm; Steven D Schwartz
Journal:  Biochemistry       Date:  2018-04-10       Impact factor: 3.162

Review 9.  Enzymatic Transition States and Drug Design.

Authors:  Vern L Schramm
Journal:  Chem Rev       Date:  2018-10-18       Impact factor: 60.622

10.  Inverse heavy enzyme isotope effects in methylthioadenosine nucleosidases.

Authors:  Morais Brown; Ioanna Zoi; Dimitri Antoniou; Hilda A Namanja-Magliano; Steven D Schwartz; Vern L Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-05       Impact factor: 11.205

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