Literature DB >> 24699741

Crystallization and preliminary neutron diffraction experiment of human farnesyl pyrophosphate synthase complexed with risedronate.

Takeshi Yokoyama1, Andreas Ostermann2, Mineyuki Mizuguchi1, Nobuo Niimura3, Tobias E Schrader4, Ichiro Tanaka3.   

Abstract

Nitrogen-containing bisphosphonates (N-BPs), such as risedronate and zoledronate, are currently used as a clinical drug for bone-resorption diseases and are potent inhibitors of farnesyl pyrophosphate synthase (FPPS). X-ray crystallographic analyses of FPPS with N-BPs have revealed that N-BPs bind to FPPS with three magnesium ions and several water molecules. To understand the structural characteristics of N-BPs bound to FPPS, including H atoms and hydration by water, neutron diffraction studies were initiated using BIODIFF at the Heinz Maier-Leibnitz Zentrum (MLZ). FPPS-risedronate complex crystals of approximate dimensions 2.8 × 2.5 × 1.5 mm (∼3.5 mm(3)) were obtained by repeated macro-seeding. Monochromatic neutron diffraction data were collected to 2.4 Å resolution with 98.4% overall completeness. Here, the first successful neutron data collection from FPPS in complex with N-BPs is reported.

Entities:  

Keywords:  farnesyl pyrophosphate synthase; neutron protein crystallography

Mesh:

Substances:

Year:  2014        PMID: 24699741      PMCID: PMC3976065          DOI: 10.1107/S2053230X14004087

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  19 in total

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Authors:  J E Dunford
Journal:  Curr Pharm Des       Date:  2010       Impact factor: 3.116

Review 2.  The role of water molecules in computational drug design.

Authors:  Stephanie B A de Beer; Nico P E Vermeulen; Chris Oostenbrink
Journal:  Curr Top Med Chem       Date:  2010       Impact factor: 3.295

Review 3.  Prenyl proteins in eukaryotic cells: a new type of membrane anchor.

Authors:  J A Glomset; M H Gelb; C C Farnsworth
Journal:  Trends Biochem Sci       Date:  1990-04       Impact factor: 13.807

4.  Bisphosphonates inhibit the growth of Trypanosoma brucei, Trypanosoma cruzi, Leishmania donovani, Toxoplasma gondii, and Plasmodium falciparum: a potential route to chemotherapy.

Authors:  M B Martin; J S Grimley; J C Lewis; H T Heath; B N Bailey; H Kendrick; V Yardley; A Caldera; R Lira; J A Urbina; S N Moreno; R Docampo; S L Croft; E Oldfield
Journal:  J Med Chem       Date:  2001-03-15       Impact factor: 7.446

5.  Hydrogen-bond network and pH sensitivity in transthyretin: Neutron crystal structure of human transthyretin.

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Journal:  J Struct Biol       Date:  2012-01-11       Impact factor: 2.867

6.  Zoledronate stimulates gamma delta T cells in prostate cancer patients.

Authors:  Michio Naoe; Yoshio Ogawa; Kumiko Takeshita; Jun Morita; Takeshi Shichijo; Khozo Fuji; Takashi Fukagai; Sanju Iwamoto; Shuji Terao
Journal:  Oncol Res       Date:  2010       Impact factor: 5.574

Review 7.  Farnesyl diphosphate synthase; regulation of product specificity.

Authors:  Anna Szkopińska; Danuta Płochocka
Journal:  Acta Biochim Pol       Date:  2005       Impact factor: 2.149

8.  Direct observation of hydrogen atom dynamics and interactions by ultrahigh resolution neutron protein crystallography.

Authors:  Julian C-H Chen; B Leif Hanson; S Zoë Fisher; Paul Langan; Andrey Y Kovalevsky
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

Review 9.  New insights into the molecular mechanisms of action of bisphosphonates.

Authors:  Michael J Rogers
Journal:  Curr Pharm Des       Date:  2003       Impact factor: 3.116

10.  Zoledronic acid directly suppresses cell proliferation and induces apoptosis in highly tumorigenic prostate and breast cancers.

Authors:  Hussain Almubarak; Antonia Jones; Risa Chaisuparat; Ming Zhang; Timothy F Meiller; Mark A Scheper
Journal:  J Carcinog       Date:  2011-01-15
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  1 in total

1.  Positive selection and functional divergence of farnesyl pyrophosphate synthase genes in plants.

Authors:  Jieying Qian; Yong Liu; Naixia Chao; Chengtong Ma; Qicong Chen; Jian Sun; Yaosheng Wu
Journal:  BMC Mol Biol       Date:  2017-02-04       Impact factor: 2.946

  1 in total

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