Literature DB >> 24695741

Enigmatic distribution, evolution, and function of inteins.

Olga Novikova1, Natalya Topilina2, Marlene Belfort2.   

Abstract

Inteins are mobile genetic elements capable of self-splicing post-translationally. They exist in all three domains of life including in viruses and bacteriophage, where they have a sporadic distribution even among very closely related species. In this review, we address this anomalous distribution from the point of view of the evolution of the host species as well as the intrinsic features of the inteins that contribute to their genetic mobility. We also discuss the incidence of inteins in functionally important sites of their host proteins. Finally, we describe instances of conditional protein splicing. These latter observations lead us to the hypothesis that some inteins have adapted to become sensors that play regulatory roles within their host protein, to the advantage of the organism in which they reside.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Bioinformatics; Conditional Splicing; DNA Enzymes; Intein Gain and Loss; Intein Localization; Invasion; Microbiology; Molecular Evolution; Protein Splicing; Splicing

Mesh:

Substances:

Year:  2014        PMID: 24695741      PMCID: PMC4031506          DOI: 10.1074/jbc.R114.548255

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  93 in total

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Authors:  Emma Hambly; Curtis A Suttle
Journal:  Curr Opin Microbiol       Date:  2005-08       Impact factor: 7.934

2.  Elimination of in vivo cleavage between target protein and intein in the intein-mediated protein purification systems.

Authors:  Chunxian Cui; Wentao Zhao; Jianglei Chen; Jianjun Wang; Qianqian Li
Journal:  Protein Expr Purif       Date:  2006-06-15       Impact factor: 1.650

3.  Symbiosis as an adaptive process and source of phenotypic complexity.

Authors:  Nancy A Moran
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-09       Impact factor: 11.205

4.  The mechanism of protein splicing and its modulation by mutation.

Authors:  M Q Xu; F B Perler
Journal:  EMBO J       Date:  1996-10-01       Impact factor: 11.598

Review 5.  Recent progress in intein research: from mechanism to directed evolution and applications.

Authors:  Gerrit Volkmann; Henning D Mootz
Journal:  Cell Mol Life Sci       Date:  2012-08-28       Impact factor: 9.261

6.  Protein splicing: estimation of the rate of O-N and S-N acyl rearrangements, the last step of the splicing process.

Authors:  Y Shao; H Paulus
Journal:  J Pept Res       Date:  1997-09

7.  Tracking the in vivo evolution of multidrug resistance in Staphylococcus aureus by whole-genome sequencing.

Authors:  Michael M Mwangi; Shang Wei Wu; Yanjiao Zhou; Krzysztof Sieradzki; Herminia de Lencastre; Paul Richardson; David Bruce; Edward Rubin; Eugene Myers; Eric D Siggia; Alexander Tomasz
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-21       Impact factor: 11.205

8.  Conservation of intron and intein insertion sites: implications for life histories of parasitic genetic elements.

Authors:  Kristen S Swithers; Alireza G Senejani; Gregory P Fournier; J Peter Gogarten
Journal:  BMC Evol Biol       Date:  2009-12-31       Impact factor: 3.260

9.  The role of reticulate evolution in creating innovation and complexity.

Authors:  Kristen S Swithers; Shannon M Soucy; J Peter Gogarten
Journal:  Int J Evol Biol       Date:  2012-07-12

10.  Bacterial biosensors for screening isoform-selective ligands for human thyroid receptors α-1 and β-1.

Authors:  Izabela Gierach; Jingjing Li; Wan-Yi Wu; Gary J Grover; David W Wood
Journal:  FEBS Open Bio       Date:  2012-08-15       Impact factor: 2.693

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  45 in total

1.  SufB intein of Mycobacterium tuberculosis as a sensor for oxidative and nitrosative stresses.

Authors:  Natalya I Topilina; Cathleen M Green; Pradeepa Jayachandran; Danielle S Kelley; Matthew J Stanger; Carol Lyn Piazza; Sasmita Nayak; Marlene Belfort
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-03       Impact factor: 11.205

2.  A mesophilic cysteine-less split intein for protein trans-splicing applications under oxidizing conditions.

Authors:  Maniraj Bhagawati; Tobias M E Terhorst; Friederike Füsser; Simon Hoffmann; Tim Pasch; Shmuel Pietrokovski; Henning D Mootz
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-14       Impact factor: 11.205

3.  A promiscuous split intein with expanded protein engineering applications.

Authors:  Adam J Stevens; Giridhar Sekar; Neel H Shah; Anahita Z Mostafavi; David Cowburn; Tom W Muir
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-24       Impact factor: 11.205

4.  Comparative Genomics of Chrysochromulina Ericina Virus and Other Microalga-Infecting Large DNA Viruses Highlights Their Intricate Evolutionary Relationship with the Established Mimiviridae Family.

Authors:  Lucie Gallot-Lavallée; Guillaume Blanc; Jean-Michel Claverie
Journal:  J Virol       Date:  2017-06-26       Impact factor: 5.103

Review 5.  Chemoenzymatic Semisynthesis of Proteins.

Authors:  Robert E Thompson; Tom W Muir
Journal:  Chem Rev       Date:  2019-11-27       Impact factor: 60.622

6.  Impact of a homing intein on recombination frequency and organismal fitness.

Authors:  Adit Naor; Neta Altman-Price; Shannon M Soucy; Anna G Green; Yulia Mitiagin; Israela Turgeman-Grott; Noam Davidovich; Johann Peter Gogarten; Uri Gophna
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-26       Impact factor: 11.205

7.  Improved protein splicing using embedded split inteins.

Authors:  Josef A Gramespacher; Adam J Stevens; Robert E Thompson; Tom W Muir
Journal:  Protein Sci       Date:  2018-01-17       Impact factor: 6.725

8.  Biochemical properties of bacterial reverse transcriptase-related (rvt) gene products: multimerization, protein priming, and nucleotide preference.

Authors:  Irina A Yushenova; Irina R Arkhipova
Journal:  Curr Genet       Date:  2018-05-14       Impact factor: 3.886

Review 9.  Mobile self-splicing introns and inteins as environmental sensors.

Authors:  Marlene Belfort
Journal:  Curr Opin Microbiol       Date:  2017-05-05       Impact factor: 7.934

10.  An Atypical Mechanism of Split Intein Molecular Recognition and Folding.

Authors:  Adam J Stevens; Giridhar Sekar; Josef A Gramespacher; David Cowburn; Tom W Muir
Journal:  J Am Chem Soc       Date:  2018-09-10       Impact factor: 15.419

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