Literature DB >> 24692306

Nucleic acid based logical systems.

Da Han1, Huaizhi Kang, Tao Zhang, Cuichen Wu, Cuisong Zhou, Mingxu You, Zhuo Chen, Xiaobing Zhang, Weihong Tan.   

Abstract

Researchers increasingly visualize a significant role for artificial biochemical logical systems in biological engineering, much like digital logic circuits in electrical engineering. Those logical systems could be utilized as a type of servomechanism to control nanodevices in vitro, monitor chemical reactions in situ, or regulate gene expression in vivo. Nucleic acids (NA), as carriers of genetic information with well-regulated and predictable structures, are promising materials for the design and engineering of biochemical circuits. A number of logical devices based on nucleic acids (NA) have been designed to handle various processes for technological or biotechnological purposes. This article focuses on the most recent and important developments in NA-based logical devices and their evolution from in vitro, through cellular, even towards in vivo biological applications.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  DNA computation; DNA nanobiotechnology; logical systems; nucleic acids

Mesh:

Substances:

Year:  2014        PMID: 24692306      PMCID: PMC5512706          DOI: 10.1002/chem.201304891

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  48 in total

1.  Training a molecular automaton to play a game.

Authors:  Renjun Pei; Elizabeth Matamoros; Manhong Liu; Darko Stefanovic; Milan N Stojanovic
Journal:  Nat Nanotechnol       Date:  2010-10-24       Impact factor: 39.213

2.  Locked nucleic acid molecular beacons.

Authors:  Lin Wang; Chaoyong James Yang; Colin D Medley; Steven A Benner; Weihong Tan
Journal:  J Am Chem Soc       Date:  2005-11-16       Impact factor: 15.419

3.  Boolean control of aptamer binding states.

Authors:  Dmitry M Kolpashchikov; Milan N Stojanovic
Journal:  J Am Chem Soc       Date:  2005-08-17       Impact factor: 15.419

4.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

5.  Three-input majority logic gate and multiple input logic circuit based on DNA strand displacement.

Authors:  Wei Li; Yang Yang; Hao Yan; Yan Liu
Journal:  Nano Lett       Date:  2013-05-30       Impact factor: 11.189

6.  Molecular computation of solutions to combinatorial problems.

Authors:  L M Adleman
Journal:  Science       Date:  1994-11-11       Impact factor: 47.728

7.  A logical molecular circuit for programmable and autonomous regulation of protein activity using DNA aptamer-protein interactions.

Authors:  Da Han; Zhi Zhu; Cuichen Wu; Lu Peng; Leiji Zhou; Basri Gulbakan; Guizhi Zhu; Kathryn R Williams; Weihong Tan
Journal:  J Am Chem Soc       Date:  2012-12-13       Impact factor: 15.419

8.  Programming an in vitro DNA oscillator using a molecular networking strategy.

Authors:  Kevin Montagne; Raphael Plasson; Yasuyuki Sakai; Teruo Fujii; Yannick Rondelez
Journal:  Mol Syst Biol       Date:  2011-02-01       Impact factor: 11.429

9.  Construction of an in vitro bistable circuit from synthetic transcriptional switches.

Authors:  Jongmin Kim; Kristin S White; Erik Winfree
Journal:  Mol Syst Biol       Date:  2006-12-12       Impact factor: 11.429

10.  Autonomous molecular cascades for evaluation of cell surfaces.

Authors:  Maria Rudchenko; Steven Taylor; Payal Pallavi; Alesia Dechkovskaia; Safana Khan; Vincent P Butler; Sergei Rudchenko; Milan N Stojanovic
Journal:  Nat Nanotechnol       Date:  2013-07-28       Impact factor: 39.213

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  6 in total

1.  A survey of advancements in nucleic acid-based logic gates and computing for applications in biotechnology and biomedicine.

Authors:  Cuichen Wu; Shuo Wan; Weijia Hou; Liqin Zhang; Jiehua Xu; Cheng Cui; Yanyue Wang; Jun Hu; Weihong Tan
Journal:  Chem Commun (Camb)       Date:  2015-03-04       Impact factor: 6.222

2.  A Nonenzymatic Hairpin DNA Cascade Reaction Provides High Signal Gain of mRNA Imaging inside Live Cells.

Authors:  Cuichen Wu; Sena Cansiz; Liqin Zhang; I-Ting Teng; Liping Qiu; Juan Li; Yuan Liu; Cuisong Zhou; Rong Hu; Tao Zhang; Cheng Cui; Liang Cui; Weihong Tan
Journal:  J Am Chem Soc       Date:  2015-04-08       Impact factor: 15.419

3.  Chemically induced fluorescence switching of carbon-dots and its multiple logic gate implementation.

Authors:  Namasivayam Dhenadhayalan; King-Chuen Lin
Journal:  Sci Rep       Date:  2015-05-06       Impact factor: 4.379

Review 4.  Nucleic Acid Templated Reactions for Chemical Biology.

Authors:  Margherita Di Pisa; Oliver Seitz
Journal:  ChemMedChem       Date:  2017-06-21       Impact factor: 3.466

5.  Antibody-controlled actuation of DNA-based molecular circuits.

Authors:  Wouter Engelen; Lenny H H Meijer; Bram Somers; Tom F A de Greef; Maarten Merkx
Journal:  Nat Commun       Date:  2017-02-17       Impact factor: 14.919

Review 6.  Engineered Aptamers to Probe Molecular Interactions on the Cell Surface.

Authors:  Sana Batool; Sanam Bhandari; Shanell George; Precious Okeoma; Nabeela Van; Hazan E Zümrüt; Prabodhika Mallikaratchy
Journal:  Biomedicines       Date:  2017-08-29
  6 in total

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