Literature DB >> 16089464

Boolean control of aptamer binding states.

Dmitry M Kolpashchikov1, Milan N Stojanovic.   

Abstract

Molecules that perform Boolean calculations can analyze a series of inputs and make a decision to produce or not to produce an output, based on the presence or absence of inputs and a particular formula they encode. We now report that molecular computation performed by deoxyribozyme-based logic gates can be used to control the functional state of aptamers, switching them on or off based on the outcome of such computation.

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Year:  2005        PMID: 16089464     DOI: 10.1021/ja051362f

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  17 in total

1.  DNA nanotechnology for nucleic acid analysis: DX motif-based sensor.

Authors:  Dmitry M Kolpashchikov; Yulia V Gerasimova; Mohammad S Khan
Journal:  Chembiochem       Date:  2011-10-18       Impact factor: 3.164

2.  A microfluidic DNA computing processor for gene expression analysis and gene drug synthesis.

Authors:  Yu Zhang; Hao Yu; Jianhua Qin; Bingcheng Lin
Journal:  Biomicrofluidics       Date:  2009-11-06       Impact factor: 2.800

Review 3.  Aptamers for allosteric regulation.

Authors:  Jan L Vinkenborg; Nora Karnowski; Michael Famulok
Journal:  Nat Chem Biol       Date:  2011-07-18       Impact factor: 15.040

4.  Bridging the Two Worlds: A Universal Interface between Enzymatic and DNA Computing Systems.

Authors:  Shay Mailloux; Yulia V Gerasimova; Nataliia Guz; Dmitry M Kolpashchikov; Evgeny Katz
Journal:  Angew Chem Int Ed Engl       Date:  2015-04-09       Impact factor: 15.336

5.  Nucleic acid based logical systems.

Authors:  Da Han; Huaizhi Kang; Tao Zhang; Cuichen Wu; Cuisong Zhou; Mingxu You; Zhuo Chen; Xiaobing Zhang; Weihong Tan
Journal:  Chemistry       Date:  2014-04-01       Impact factor: 5.236

6.  A logical molecular circuit for programmable and autonomous regulation of protein activity using DNA aptamer-protein interactions.

Authors:  Da Han; Zhi Zhu; Cuichen Wu; Lu Peng; Leiji Zhou; Basri Gulbakan; Guizhi Zhu; Kathryn R Williams; Weihong Tan
Journal:  J Am Chem Soc       Date:  2012-12-13       Impact factor: 15.419

7.  Input-dependent induction of oligonucleotide structural motifs for performing molecular logic.

Authors:  Tao Li; Damian Ackermann; Anna M Hall; Michael Famulok
Journal:  J Am Chem Soc       Date:  2012-02-08       Impact factor: 15.419

Review 8.  Hypervalent Iodine-Mediated Late-Stage Peptide and Protein Functionalization.

Authors:  Emmanuelle M D Allouche; Elija Grinhagena; Jerome Waser
Journal:  Angew Chem Int Ed Engl       Date:  2021-12-08       Impact factor: 16.823

9.  Reversible energy-transfer switching on a DNA scaffold.

Authors:  Magnus Bälter; Martin Hammarson; Patricia Remón; Shiming Li; Nittaya Gale; Tom Brown; Joakim Andréasson
Journal:  J Am Chem Soc       Date:  2015-02-17       Impact factor: 15.419

10.  A modular DNA signal translator for the controlled release of a protein by an aptamer.

Authors:  Stefan Beyer; Friedrich C Simmel
Journal:  Nucleic Acids Res       Date:  2006-03-17       Impact factor: 16.971

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