Literature DB >> 2468367

Statistical discrimination of fractal and Markov models of single-channel gating.

S J Korn1, R Horn.   

Abstract

A statistical comparison is presented of Markov and fractal models of ion channel gating. The analysis is based on single-channel data from two types of ion channels: open times from a 90 pS Ca-activated K channel from GH3 pituitary cells, and closed times from a nonselective channel from rabbit corneal endothelium (Liebovitch et al., 1987a). Maximum likelihood methods were used to fit the data. For both data sets the best Markov model had three exponential components. The best Markov model had a higher likelihood than the fractal model, and the Asymptotic Information Criterion favored the Markov model for each data set. A more detailed analysis, using the Monte Carlo methods described in Horn (1987), showed that the Markov model was not significantly better than the fractal model for the corneal endothelium channels. The inability to discriminate the models definitively in this case was shown to be due in part to the small size of the data set.

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Year:  1988        PMID: 2468367      PMCID: PMC1330395          DOI: 10.1016/S0006-3495(88)83023-6

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  19 in total

1.  Calcium-activated potassium channels in rat muscle inactivate from a short-duration open state.

Authors:  B S Pallotta
Journal:  J Physiol       Date:  1985-06       Impact factor: 5.182

2.  Relaxations, fluctuations and ion transfer across membranes.

Authors:  H M Fishman
Journal:  Prog Biophys Mol Biol       Date:  1985       Impact factor: 3.667

3.  Fractal model of ion-channel kinetics.

Authors:  L S Liebovitch; J Fischbarg; J P Koniarek; I Todorova; M Wang
Journal:  Biochim Biophys Acta       Date:  1987-01-26

4.  Quantitative description of three modes of activity of fast chloride channels from rat skeletal muscle.

Authors:  A L Blatz; K L Magleby
Journal:  J Physiol       Date:  1986-09       Impact factor: 5.182

5.  Statistical methods for model discrimination. Applications to gating kinetics and permeation of the acetylcholine receptor channel.

Authors:  R Horn
Journal:  Biophys J       Date:  1987-02       Impact factor: 4.033

6.  Sampling, log binning, fitting, and plotting durations of open and shut intervals from single channels and the effects of noise.

Authors:  O B McManus; A L Blatz; K L Magleby
Journal:  Pflugers Arch       Date:  1987-11       Impact factor: 3.657

7.  Data transformations for improved display and fitting of single-channel dwell time histograms.

Authors:  F J Sigworth; S M Sine
Journal:  Biophys J       Date:  1987-12       Impact factor: 4.033

8.  Relationships of agonist properties to the single channel kinetics of nicotinic acetylcholine receptors.

Authors:  R L Papke; G Millhauser; Z Lieberman; R E Oswald
Journal:  Biophys J       Date:  1988-01       Impact factor: 4.033

9.  Fractal analysis of a voltage-dependent potassium channel from cultured mouse hippocampal neurons.

Authors:  L S Liebovitch; J M Sullivan
Journal:  Biophys J       Date:  1987-12       Impact factor: 4.033

10.  Kinetics of activation of acetylcholine receptors in a mouse muscle cell line under a range of acetylcholine concentrations.

Authors:  S Hestrin; J I Korenbrot; A V Maricq
Journal:  Biophys J       Date:  1987-03       Impact factor: 4.033

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  39 in total

1.  A possible resolution of the gating paradox.

Authors:  L P Endresen; J S Høye
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

2.  Evolving potassium channels by means of yeast selection reveals structural elements important for selectivity.

Authors:  Delphine Bichet; Yu-Fung Lin; Christian A Ibarra; Cindy Shen Huang; B Alexander Yi; Yuh Nung Jan; Lily Yeh Jan
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-22       Impact factor: 11.205

3.  Distributions-per-level: a means of testing level detectors and models of patch-clamp data.

Authors:  I Schröder; T Huth; V Suitchmezian; J Jarosik; S Schnell; U P Hansen
Journal:  J Membr Biol       Date:  2004-01-01       Impact factor: 1.843

Review 4.  Activation of skeletal muscle nicotinic acetylcholine receptors.

Authors:  C J Lingle; D Maconochie; J H Steinbach
Journal:  J Membr Biol       Date:  1992-03       Impact factor: 1.843

5.  A subsequent fit of time series and amplitude histogram of patch-clamp records reveals rate constants up to 1 per microsecond.

Authors:  I Schröder; P Harlfinger; T Huth; U P Hansen
Journal:  J Membr Biol       Date:  2005-01       Impact factor: 1.843

6.  A sodium channel gating model based on single channel, macroscopic ionic, and gating currents in the squid giant axon.

Authors:  C A Vandenberg; F Bezanilla
Journal:  Biophys J       Date:  1991-12       Impact factor: 4.033

7.  Biological transport processes and space dimension.

Authors:  W Nadler; D L Stein
Journal:  Proc Natl Acad Sci U S A       Date:  1991-08-01       Impact factor: 11.205

8.  Diffusion model in ion channel gating. Extension to agonist-activated ion channels.

Authors:  R E Oswald; G L Millhauser; A A Carter
Journal:  Biophys J       Date:  1991-05       Impact factor: 4.033

9.  The power of two-dimensional dwell-time analysis for model discrimination, temporal resolution, multichannel analysis and level detection.

Authors:  Tobias Huth; Indra Schroeder; Ulf-Peter Hansen
Journal:  J Membr Biol       Date:  2007-06-06       Impact factor: 1.843

10.  Activation of bovine tracheal chloride channels by amino group-specific reagents.

Authors:  M Duszyk; Y Shu; A K Ho; S F Man
Journal:  J Physiol       Date:  1998-10-01       Impact factor: 5.182

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