Literature DB >> 15070737

Evolving potassium channels by means of yeast selection reveals structural elements important for selectivity.

Delphine Bichet1, Yu-Fung Lin, Christian A Ibarra, Cindy Shen Huang, B Alexander Yi, Yuh Nung Jan, Lily Yeh Jan.   

Abstract

Potassium channels are widely distributed. To serve their physiological functions, such as neuronal signaling, control of insulin release, and regulation of heart rate and blood flow, it is essential that K+ channels allow K+ but not the smaller and more abundant Na+ ions to go through. The narrowest part of the channel pore, the selectivity filter formed by backbone carbonyls of the GYG-containing K+ channel signature sequence, approximates the hydration shell of K+ ions. However, the K+ channel signature sequence is not sufficient for K+ selectivity. To identify structural elements important for K+ selectivity, we randomly mutagenized the G protein-coupled inwardly rectifying potassium channel 3.2 (GIRK2) bearing the S177W mutation on the second transmembrane segment. This mutation confers constitutive channel activity but abolishes K+ selectivity and hence the channel's ability to complement the K+ transport deficiency of Deltatrk1Deltatrk2 mutant yeast. S177W-containing GIRK2 mutants that support yeast growth in low-K+ medium contain multiple suppressors, each partially restoring K+ selectivity to S177W-containing double mutants. These suppressors include mutations in the first transmembrane segment and the pore helix, likely exerting long-range actions to restore K+ selectivity, as well as a mutation of a second transmembrane segment residue facing the cytoplasmic half of the pore, below the selectivity filter. Some of these suppressors also affected channel gating (channel open time and opening frequency determined in single-channel analyses), revealing intriguing interplay between ion permeation and channel gating.

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Year:  2004        PMID: 15070737      PMCID: PMC384766          DOI: 10.1073/pnas.0401195101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  44 in total

1.  Structural basis of inward rectification: cytoplasmic pore of the G protein-gated inward rectifier GIRK1 at 1.8 A resolution.

Authors:  Motohiko Nishida; Roderick MacKinnon
Journal:  Cell       Date:  2002-12-27       Impact factor: 41.582

2.  The pore helix is involved in stabilizing the open state of inwardly rectifying K+ channels.

Authors:  Noga Alagem; Semen Yesylevskyy; Eitan Reuveny
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

3.  Subunit stoichiometry of a mammalian K+ channel determined by construction of multimeric cDNAs.

Authors:  E R Liman; J Tytgat; P Hess
Journal:  Neuron       Date:  1992-11       Impact factor: 17.173

Review 4.  Merging functional studies with structures of inward-rectifier K(+) channels.

Authors:  Delphine Bichet; Friederike A Haass; Lily Yeh Jan
Journal:  Nat Rev Neurosci       Date:  2003-12       Impact factor: 34.870

5.  Statistical discrimination of fractal and Markov models of single-channel gating.

Authors:  S J Korn; R Horn
Journal:  Biophys J       Date:  1988-11       Impact factor: 4.033

6.  Data transformations for improved display and fitting of single-channel dwell time histograms.

Authors:  F J Sigworth; S M Sine
Journal:  Biophys J       Date:  1987-12       Impact factor: 4.033

7.  Kinetic states and modes of single large-conductance calcium-activated potassium channels in cultured rat skeletal muscle.

Authors:  O B McManus; K L Magleby
Journal:  J Physiol       Date:  1988-08       Impact factor: 5.182

8.  Electrostatic tuning of Mg2+ affinity in an inward-rectifier K+ channel.

Authors:  Z Lu; R MacKinnon
Journal:  Nature       Date:  1994-09-15       Impact factor: 49.962

9.  Mutations in the K+ channel signature sequence.

Authors:  L Heginbotham; Z Lu; T Abramson; R MacKinnon
Journal:  Biophys J       Date:  1994-04       Impact factor: 4.033

10.  Ser165 in the second transmembrane region of the Kir2.1 channel determines its susceptibility to blockade by intracellular Mg2+.

Authors:  Yuichiro Fujiwara; Yoshihiro Kubo
Journal:  J Gen Physiol       Date:  2002-11       Impact factor: 4.086

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  27 in total

1.  Endoplasmic reticulum-associated degradation of the renal potassium channel, ROMK, leads to type II Bartter syndrome.

Authors:  Brighid M O'Donnell; Timothy D Mackie; Arohan R Subramanya; Jeffrey L Brodsky
Journal:  J Biol Chem       Date:  2017-06-19       Impact factor: 5.157

2.  The endosomal trafficking factors CORVET and ESCRT suppress plasma membrane residence of the renal outer medullary potassium channel (ROMK).

Authors:  Timothy D Mackie; Bo-Young Kim; Arohan R Subramanya; Daniel J Bain; Allyson F O'Donnell; Paul A Welling; Jeffrey L Brodsky
Journal:  J Biol Chem       Date:  2018-01-08       Impact factor: 5.157

3.  The pore helix dipole has a minor role in inward rectifier channel function.

Authors:  Franck C Chatelain; Noga Alagem; Qiang Xu; Raika Pancaroglu; Eitan Reuveny; Daniel L Minor
Journal:  Neuron       Date:  2005-09-15       Impact factor: 17.173

4.  Elongation of outer transmembrane domain alters function of miniature K+ channel Kcv.

Authors:  Brigitte Hertel; Sascha Tayefeh; Mario Mehmel; Stefan M Kast; James Van Etten; Anna Moroni; Gerhard Thiel
Journal:  J Membr Biol       Date:  2006-05-17       Impact factor: 1.843

5.  Tuning a potassium channel--the caress of the surroundings.

Authors:  Peter C Jordan
Journal:  Biophys J       Date:  2007-05-18       Impact factor: 4.033

6.  Tuning ion coordination architectures to enable selective partitioning.

Authors:  Sameer Varma; Susan B Rempe
Journal:  Biophys J       Date:  2007-05-18       Impact factor: 4.033

7.  Identification of yeast proteins necessary for cell-surface function of a potassium channel.

Authors:  Friederike A Haass; Martin Jonikas; Peter Walter; Jonathan S Weissman; Yuh-Nung Jan; Lily Y Jan; Maya Schuldiner
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-07       Impact factor: 11.205

8.  Using yeast to study potassium channel function and interactions with small molecules.

Authors:  Sviatoslav N Bagriantsev; Daniel L Minor
Journal:  Methods Mol Biol       Date:  2013

9.  An essential ligand-binding domain in the membrane receptor for retinol-binding protein revealed by large-scale mutagenesis and a human polymorphism.

Authors:  Riki Kawaguchi; Jiamei Yu; Patrick Wiita; Jane Honda; Hui Sun
Journal:  J Biol Chem       Date:  2008-04-03       Impact factor: 5.157

Review 10.  Searching for interesting channels: pairing selection and molecular evolution methods to study ion channel structure and function.

Authors:  Daniel L Minor
Journal:  Mol Biosyst       Date:  2009-06-19
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