Literature DB >> 24671496

High-density single-particle tracking: quantifying molecule organization and dynamics at the nanoscale.

Jean-Baptiste Sibarita1.   

Abstract

The organization and dynamics of proteins are fundamental parameters for cellular function. Their study, at the single-molecule level, provides precise information on molecular interactions. Over the last 30 years, the single-particle tracking imaging technique has proven its capability to efficiently quantify such parameters in many biological systems, with nanometric accuracy and millisecond temporal resolutions. Nevertheless, the low concentration of labeling required for single-molecule imaging usually prevents the extraction of large statistics. The advent of high-density single-molecule-based super-resolution techniques has revolutionized the field, allowing monitoring of thousands of biomolecules in the minute timescale and providing unprecedented insight into the molecular organization and dynamics of cellular compounds. In this issue, I will review the main principles of single-particle tracking, a highly interdisciplinary technique at the interface between microscopy, image analysis and labeling strategies. I will point out the advantages brought by high-density single-particle tracking which will be illustrated with a few recent biological results.

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Year:  2014        PMID: 24671496     DOI: 10.1007/s00418-014-1214-1

Source DB:  PubMed          Journal:  Histochem Cell Biol        ISSN: 0948-6143            Impact factor:   4.304


  69 in total

1.  Quantitative comparison of algorithms for tracking single fluorescent particles.

Authors:  M K Cheezum; W F Walker; W H Guilford
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

2.  High-density mapping of single-molecule trajectories with photoactivated localization microscopy.

Authors:  Suliana Manley; Jennifer M Gillette; George H Patterson; Hari Shroff; Harald F Hess; Eric Betzig; Jennifer Lippincott-Schwartz
Journal:  Nat Methods       Date:  2008-01-13       Impact factor: 28.547

3.  Real-time computation of subdiffraction-resolution fluorescence images.

Authors:  S Wolter; M Schüttpelz; M Tscherepanow; S VAN DE Linde; M Heilemann; M Sauer
Journal:  J Microsc       Date:  2010-01       Impact factor: 1.758

4.  Fluorescence nanoscopy by ground-state depletion and single-molecule return.

Authors:  Jonas Fölling; Mariano Bossi; Hannes Bock; Rebecca Medda; Christian A Wurm; Birka Hein; Stefan Jakobs; Christian Eggeling; Stefan W Hell
Journal:  Nat Methods       Date:  2008-09-15       Impact factor: 28.547

5.  Tracking kinesin-driven movements with nanometre-scale precision.

Authors:  J Gelles; B J Schnapp; M P Sheetz
Journal:  Nature       Date:  1988-02-04       Impact factor: 49.962

6.  Localizing and tracking single nanoscale emitters in three dimensions with high spatiotemporal resolution using a double-helix point spread function.

Authors:  Michael A Thompson; Matthew D Lew; Majid Badieirostami; W E Moerner
Journal:  Nano Lett       Date:  2010-01       Impact factor: 11.189

7.  Photoactivatable mCherry for high-resolution two-color fluorescence microscopy.

Authors:  Fedor V Subach; George H Patterson; Suliana Manley; Jennifer M Gillette; Jennifer Lippincott-Schwartz; Vladislav V Verkhusha
Journal:  Nat Methods       Date:  2009-01-25       Impact factor: 28.547

8.  Objective comparison of particle tracking methods.

Authors:  Nicolas Chenouard; Ihor Smal; Fabrice de Chaumont; Martin Maška; Ivo F Sbalzarini; Yuanhao Gong; Janick Cardinale; Craig Carthel; Stefano Coraluppi; Mark Winter; Andrew R Cohen; William J Godinez; Karl Rohr; Yannis Kalaidzidis; Liang Liang; James Duncan; Hongying Shen; Yingke Xu; Klas E G Magnusson; Joakim Jaldén; Helen M Blau; Perrine Paul-Gilloteaux; Philippe Roudot; Charles Kervrann; François Waharte; Jean-Yves Tinevez; Spencer L Shorte; Joost Willemse; Katherine Celler; Gilles P van Wezel; Han-Wei Dan; Yuh-Show Tsai; Carlos Ortiz de Solórzano; Jean-Christophe Olivo-Marin; Erik Meijering
Journal:  Nat Methods       Date:  2014-01-19       Impact factor: 28.547

9.  Robust single-particle tracking in live-cell time-lapse sequences.

Authors:  Khuloud Jaqaman; Dinah Loerke; Marcel Mettlen; Hirotaka Kuwata; Sergio Grinstein; Sandra L Schmid; Gaudenz Danuser
Journal:  Nat Methods       Date:  2008-07-20       Impact factor: 28.547

10.  Single-molecule imaging of transcription factor binding to DNA in live mammalian cells.

Authors:  J Christof M Gebhardt; David M Suter; Rahul Roy; Ziqing W Zhao; Alec R Chapman; Srinjan Basu; Tom Maniatis; X Sunney Xie
Journal:  Nat Methods       Date:  2013-03-24       Impact factor: 28.547

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  12 in total

Review 1.  The Histochemistry and Cell Biology pandect: the year 2014 in review.

Authors:  Douglas J Taatjes; Jürgen Roth
Journal:  Histochem Cell Biol       Date:  2015-03-06       Impact factor: 4.304

2.  Single-particle tracking photoactivated localization microscopy of membrane proteins in living plant tissues.

Authors:  Vincent Bayle; Jean-Bernard Fiche; Claire Burny; Matthieu Pierre Platre; Marcelo Nollmann; Alexandre Martinière; Yvon Jaillais
Journal:  Nat Protoc       Date:  2021-02-24       Impact factor: 13.491

Review 3.  Advanced imaging and labelling methods to decipher brain cell organization and function.

Authors:  Daniel Choquet; Matthieu Sainlos; Jean-Baptiste Sibarita
Journal:  Nat Rev Neurosci       Date:  2021-03-12       Impact factor: 34.870

4.  In this special issue. In focus: Single-molecule super-resolution microscopy.

Authors:  Jürgen Roth; Mike Heilemann
Journal:  Histochem Cell Biol       Date:  2014-05-21       Impact factor: 4.304

5.  Single nanoparticle tracking of [Formula: see text]-methyl-d-aspartate receptors in cultured and intact brain tissue.

Authors:  Juan A Varela; Joana S Ferreira; Julien P Dupuis; Pauline Durand; Delphine Bouchet; Laurent Groc
Journal:  Neurophotonics       Date:  2016-07-12       Impact factor: 3.593

6.  Localization-based super-resolution imaging meets high-content screening.

Authors:  Anne Beghin; Adel Kechkar; Corey Butler; Florian Levet; Marine Cabillic; Olivier Rossier; Gregory Giannone; Rémi Galland; Daniel Choquet; Jean-Baptiste Sibarita
Journal:  Nat Methods       Date:  2017-10-30       Impact factor: 28.547

7.  Single-particle tracking uncovers dynamics of glutamate-induced retrograde transport of NF-κB p65 in living neurons.

Authors:  Darius Widera; Christin Klenke; Deepak Nair; Meike Heidbreder; Sebastian Malkusch; Jean-Baptiste Sibarita; Daniel Choquet; Barbara Kaltschmidt; Mike Heilemann; Christian Kaltschmidt
Journal:  Neurophotonics       Date:  2016-05-18       Impact factor: 3.593

8.  A quantitative imaging-based screen reveals the exocyst as a network hub connecting endocytosis and exocytosis.

Authors:  Mini Jose; Sylvain Tollis; Deepak Nair; Romain Mitteau; Christophe Velours; Aurelie Massoni-Laporte; Anne Royou; Jean-Baptiste Sibarita; Derek McCusker
Journal:  Mol Biol Cell       Date:  2015-05-06       Impact factor: 4.138

9.  The Nanoworld of the Tripartite Synapse: Insights from Super-Resolution Microscopy.

Authors:  Janosch P Heller; Dmitri A Rusakov
Journal:  Front Cell Neurosci       Date:  2017-11-24       Impact factor: 5.505

10.  Super-resolution microscopy reveals majorly mono- and dimeric presenilin1/γ-secretase at the cell surface.

Authors:  Abril Angélica Escamilla-Ayala; Ragna Sannerud; Magali Mondin; Karin Poersch; Wendy Vermeire; Laura Paparelli; Caroline Berlage; Marcelle Koenig; Lucia Chavez-Gutierrez; Maximilian H Ulbrich; Sebastian Munck; Hideaki Mizuno; Wim Annaert
Journal:  Elife       Date:  2020-07-07       Impact factor: 8.140

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