Literature DB >> 29083400

Localization-based super-resolution imaging meets high-content screening.

Anne Beghin1,2, Adel Kechkar3, Corey Butler1,2,4, Florian Levet1,2,5, Marine Cabillic1,2, Olivier Rossier1,2, Gregory Giannone1,2, Rémi Galland1,2, Daniel Choquet1,2,5, Jean-Baptiste Sibarita1,2.   

Abstract

Single-molecule localization microscopy techniques have proven to be essential tools for quantitatively monitoring biological processes at unprecedented spatial resolution. However, these techniques are very low throughput and are not yet compatible with fully automated, multiparametric cellular assays. This shortcoming is primarily due to the huge amount of data generated during imaging and the lack of software for automation and dedicated data mining. We describe an automated quantitative single-molecule-based super-resolution methodology that operates in standard multiwell plates and uses analysis based on high-content screening and data-mining software. The workflow is compatible with fixed- and live-cell imaging and allows extraction of quantitative data like fluorophore photophysics, protein clustering or dynamic behavior of biomolecules. We demonstrate that the method is compatible with high-content screening using 3D dSTORM and DNA-PAINT based super-resolution microscopy as well as single-particle tracking.

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Year:  2017        PMID: 29083400     DOI: 10.1038/nmeth.4486

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  52 in total

1.  High-density mapping of single-molecule trajectories with photoactivated localization microscopy.

Authors:  Suliana Manley; Jennifer M Gillette; George H Patterson; Hari Shroff; Harald F Hess; Eric Betzig; Jennifer Lippincott-Schwartz
Journal:  Nat Methods       Date:  2008-01-13       Impact factor: 28.547

Review 2.  Microscopic imaging techniques for drug discovery.

Authors:  Andrew Bullen
Journal:  Nat Rev Drug Discov       Date:  2008-01       Impact factor: 84.694

3.  Super-resolution imaging reveals that AMPA receptors inside synapses are dynamically organized in nanodomains regulated by PSD95.

Authors:  Deepak Nair; Eric Hosy; Jennifer D Petersen; Audrey Constals; Gregory Giannone; Daniel Choquet; Jean-Baptiste Sibarita
Journal:  J Neurosci       Date:  2013-08-07       Impact factor: 6.167

4.  Correlative light microscopy for high-content screening.

Authors:  Benjamin Flottmann; Manuel Gunkel; Tautvydas Lisauskas; Mike Heilemann; Vytaute Starkuviene; Jürgen Reymann; Holger Erfle
Journal:  Biotechniques       Date:  2013-11       Impact factor: 1.993

5.  Super-resolution microscopy with DNA-PAINT.

Authors:  Joerg Schnitzbauer; Maximilian T Strauss; Thomas Schlichthaerle; Florian Schueder; Ralf Jungmann
Journal:  Nat Protoc       Date:  2017-05-18       Impact factor: 13.491

6.  Regulation of AMPA receptor surface trafficking and synaptic plasticity by a cognitive enhancer and antidepressant molecule.

Authors:  H Zhang; L-A Etherington; A-S Hafner; D Belelli; F Coussen; P Delagrange; F Chaouloff; M Spedding; J J Lambert; D Choquet; L Groc
Journal:  Mol Psychiatry       Date:  2012-06-26       Impact factor: 15.992

7.  Resolution doubling in 3D-STORM imaging through improved buffers.

Authors:  Nicolas Olivier; Debora Keller; Pierre Gönczy; Suliana Manley
Journal:  PLoS One       Date:  2013-07-17       Impact factor: 3.240

8.  FALCON: fast and unbiased reconstruction of high-density super-resolution microscopy data.

Authors:  Junhong Min; Cédric Vonesch; Hagai Kirshner; Lina Carlini; Nicolas Olivier; Seamus Holden; Suliana Manley; Jong Chul Ye; Michael Unser
Journal:  Sci Rep       Date:  2014-04-03       Impact factor: 4.379

9.  Hippocampal LTP and contextual learning require surface diffusion of AMPA receptors.

Authors:  A C Penn; C L Zhang; F Georges; L Royer; C Breillat; E Hosy; J D Petersen; Y Humeau; D Choquet
Journal:  Nature       Date:  2017-09-13       Impact factor: 49.962

10.  Surface mobility of postsynaptic AMPARs tunes synaptic transmission.

Authors:  Martin Heine; Laurent Groc; Renato Frischknecht; Jean-Claude Béïque; Brahim Lounis; Gavin Rumbaugh; Richard L Huganir; Laurent Cognet; Daniel Choquet
Journal:  Science       Date:  2008-04-11       Impact factor: 47.728

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  28 in total

1.  Excitation-multiplexed multicolor superresolution imaging with fm-STORM and fm-DNA-PAINT.

Authors:  Pablo A Gómez-García; Erik T Garbacik; Jason J Otterstrom; Maria F Garcia-Parajo; Melike Lakadamyali
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-03       Impact factor: 11.205

2.  Super-resolution localization microscopy: Toward high throughput, high quality, and low cost.

Authors:  Hongqiang Ma; Yang Liu
Journal:  APL Photonics       Date:  2020-06-24

3.  Deep learning massively accelerates super-resolution localization microscopy.

Authors:  Wei Ouyang; Andrey Aristov; Mickaël Lelek; Xian Hao; Christophe Zimmer
Journal:  Nat Biotechnol       Date:  2018-04-16       Impact factor: 54.908

Review 4.  Visualizing the genome in high resolution challenges our textbook understanding.

Authors:  Melike Lakadamyali; Maria Pia Cosma
Journal:  Nat Methods       Date:  2020-03-02       Impact factor: 28.547

5.  A robust unsupervised machine-learning method to quantify the morphological heterogeneity of cells and nuclei.

Authors:  Jude M Phillip; Kyu-Sang Han; Wei-Chiang Chen; Denis Wirtz; Pei-Hsun Wu
Journal:  Nat Protoc       Date:  2021-01-11       Impact factor: 13.491

6.  PCIe-based FPGA-GPU heterogeneous computation for real-time multi-emitter fitting in super-resolution localization microscopy.

Authors:  Dan Gui; Yunjiu Chen; Weibing Kuang; Mingtao Shang; Yingjun Zhang; Zhen-Li Huang
Journal:  Biomed Opt Express       Date:  2022-05-16       Impact factor: 3.562

7.  Single-molecule localization microscopy.

Authors:  Mickaël Lelek; Melina T Gyparaki; Gerti Beliu; Florian Schueder; Juliette Griffié; Suliana Manley; Ralf Jungmann; Markus Sauer; Melike Lakadamyali; Christophe Zimmer
Journal:  Nat Rev Methods Primers       Date:  2021-06-03

8.  CaMKII activation persistently segregates postsynaptic proteins via liquid phase separation.

Authors:  Tomohisa Hosokawa; Pin-Wu Liu; Qixu Cai; Joana S Ferreira; Florian Levet; Corey Butler; Jean-Baptiste Sibarita; Daniel Choquet; Laurent Groc; Eric Hosy; Mingjie Zhang; Yasunori Hayashi
Journal:  Nat Neurosci       Date:  2021-04-29       Impact factor: 24.884

Review 9.  Super-resolution microscopy: a closer look at synaptic dysfunction in Alzheimer disease.

Authors:  Pranesh Padmanabhan; Andrew Kneynsberg; Jürgen Götz
Journal:  Nat Rev Neurosci       Date:  2021-11-01       Impact factor: 34.870

Review 10.  Technological advances in super-resolution microscopy to study cellular processes.

Authors:  Charles Bond; Adriana N Santiago-Ruiz; Qing Tang; Melike Lakadamyali
Journal:  Mol Cell       Date:  2022-01-20       Impact factor: 17.970

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