Literature DB >> 24670637

Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 Å.

Satomi Niwa1, Long-Jiang Yu2, Kazuki Takeda1, Yu Hirano3, Tomoaki Kawakami4, Zheng-Yu Wang-Otomo4, Kunio Miki3.   

Abstract

The light-harvesting core antenna (LH1) and the reaction centre (RC) of purple photosynthetic bacteria form a supramolecular complex (LH1-RC) to use sunlight energy in a highly efficient manner. Here we report the first near-atomic structure, to our knowledge, of a LH1-RC complex, namely that of a Ca(2+)-bound complex from Thermochromatium tepidum, which reveals detailed information on the arrangement and interactions of the protein subunits and the cofactors. The RC is surrounded by 16 heterodimers of the LH1 αβ-subunit that form a completely closed structure. The Ca(2+) ions are located at the periplasmic side of LH1. Thirty-two bacteriochlorophyll and 16 spirilloxanthin molecules in the LH1 ring form an elliptical assembly. The geometries of the pigment assembly involved in the absorption characteristics of the bacteriochlorophyll in LH1 and excitation energy transfer among the pigments are reported. In addition, possible ubiquinone channels in the closed LH1 complex are proposed based on the atomic structure.

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Year:  2014        PMID: 24670637     DOI: 10.1038/nature13197

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  36 in total

1.  Crystal structure of the RC-LH1 core complex from Rhodopseudomonas palustris.

Authors:  Aleksander W Roszak; Tina D Howard; June Southall; Alastair T Gardiner; Christopher J Law; Neil W Isaacs; Richard J Cogdell
Journal:  Science       Date:  2003-12-12       Impact factor: 47.728

2.  Projection structure of the photosynthetic reaction centre-antenna complex of Rhodospirillum rubrum at 8.5 A resolution.

Authors:  Stuart J Jamieson; Peiyi Wang; Pu Qian; John Y Kirkland; Matthew J Conroy; C Neil Hunter; Per A Bullough
Journal:  EMBO J       Date:  2002-08-01       Impact factor: 11.598

3.  Structural role of PufX in the dimerization of the photosynthetic core complex of Rhodobacter sphaeroides.

Authors:  Simon Scheuring; Francesco Francia; Johan Busselez; Bruno Andrea Melandri; Jean-Louis Rigaud; Daniel Lévy
Journal:  J Biol Chem       Date:  2003-10-27       Impact factor: 5.157

4.  Flexibility and size heterogeneity of the LH1 light harvesting complex revealed by atomic force microscopy: functional significance for bacterial photosynthesis.

Authors:  Svetlana Bahatyrova; Raoul N Frese; Kees O van der Werf; Cees Otto; C Neil Hunter; John D Olsen
Journal:  J Biol Chem       Date:  2004-03-01       Impact factor: 5.157

5.  Purification, characterization and crystallization of the core complex from thermophilic purple sulfur bacterium Thermochromatium tepidum.

Authors:  Hiroaki Suzuki; Yu Hirano; Yukihiro Kimura; Shinichi Takaichi; Masayuki Kobayashi; Kunio Miki; Zheng-Yu Wang
Journal:  Biochim Biophys Acta       Date:  2007-06-16

6.  Calcium ions are involved in the unusual red shift of the light-harvesting 1 Qy transition of the core complex in thermophilic purple sulfur bacterium Thermochromatium tepidum.

Authors:  Yukihiro Kimura; Yu Hirano; Long-Jiang Yu; Hiroaki Suzuki; Masayuki Kobayashi; Zheng-Yu Wang
Journal:  J Biol Chem       Date:  2008-03-10       Impact factor: 5.157

7.  Metal cations modulate the bacteriochlorophyll-protein interaction in the light-harvesting 1 core complex from Thermochromatium tepidum.

Authors:  Yukihiro Kimura; Yuta Inada; Tomoko Numata; Teruhisa Arikawa; Yong Li; Jian-Ping Zhang; Zheng-Yu Wang; Takashi Ohno
Journal:  Biochim Biophys Acta       Date:  2012-03-21

8.  The structure and thermal motion of the B800-850 LH2 complex from Rps.acidophila at 2.0A resolution and 100K: new structural features and functionally relevant motions.

Authors:  Miroslav Z Papiz; Steve M Prince; Tina Howard; Richard J Cogdell; Neil W Isaacs
Journal:  J Mol Biol       Date:  2003-03-07       Impact factor: 5.469

9.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

10.  The crystal structure of the light-harvesting complex II (B800-850) from Rhodospirillum molischianum.

Authors:  J Koepke; X Hu; C Muenke; K Schulten; H Michel
Journal:  Structure       Date:  1996-05-15       Impact factor: 5.006

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  44 in total

1.  Charge-density analysis of an iron-sulfur protein at an ultra-high resolution of 0.48 Å.

Authors:  Yu Hirano; Kazuki Takeda; Kunio Miki
Journal:  Nature       Date:  2016-05-18       Impact factor: 49.962

2.  Consequences of saturation mutagenesis of the protein ligand to the B-side monomeric bacteriochlorophyll in reaction centers from Rhodobacter capsulatus.

Authors:  Kaitlyn M Faries; Claire E Kohout; Grace Xiyu Wang; Deborah K Hanson; Dewey Holten; Philip D Laible; Christine Kirmaier
Journal:  Photosynth Res       Date:  2019-03-11       Impact factor: 3.573

3.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

4.  Structural biology: The purple heart of photosynthesis.

Authors:  Richard J Cogdell; Aleksander W Roszak
Journal:  Nature       Date:  2014-03-26       Impact factor: 49.962

Review 5.  Natural strategies for photosynthetic light harvesting.

Authors:  Roberta Croce; Herbert van Amerongen
Journal:  Nat Chem Biol       Date:  2014-07       Impact factor: 15.040

6.  Light harvesting by lamellar chromatophores in Rhodospirillum photometricum.

Authors:  Danielle E Chandler; Johan Strümpfer; Melih Sener; Simon Scheuring; Klaus Schulten
Journal:  Biophys J       Date:  2014-06-03       Impact factor: 4.033

7.  Heterologous Production of the Photosynthetic Reaction Center and Light Harvesting 1 Complexes of the Thermophile Thermochromatium tepidum in the Mesophile Rhodobacter sphaeroides and Thermal Stability of a Hybrid Core Complex.

Authors:  D Jun; V Huang; J T Beatty
Journal:  Appl Environ Microbiol       Date:  2017-09-29       Impact factor: 4.792

Review 8.  Contribution of low-temperature single-molecule techniques to structural issues of pigment-protein complexes from photosynthetic purple bacteria.

Authors:  Alexander Löhner; Richard Cogdell; Jürgen Köhler
Journal:  J R Soc Interface       Date:  2018-01       Impact factor: 4.118

9.  Unusual features in the photosynthetic machinery of Halorhodospira halochloris DSM 1059 revealed by complete genome sequencing.

Authors:  Yusuke Tsukatani; Yuu Hirose; Jiro Harada; Chinatsu Yonekawa; Hitoshi Tamiaki
Journal:  Photosynth Res       Date:  2019-01-30       Impact factor: 3.573

10.  Cryo-EM structure of the photosynthetic RC-LH1-PufX supercomplex at 2.8-Å resolution.

Authors:  Laura Bracun; Atsushi Yamagata; Bern M Christianson; Tohru Terada; Daniel P Canniffe; Mikako Shirouzu; Lu-Ning Liu
Journal:  Sci Adv       Date:  2021-06-16       Impact factor: 14.136

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