Literature DB >> 24662220

Gene expression regulation mediated through reversible m⁶A RNA methylation.

Ye Fu1, Dan Dominissini2, Gideon Rechavi3, Chuan He1.   

Abstract

Cellular RNAs carry diverse chemical modifications that used to be regarded as static and having minor roles in 'fine-tuning' structural and functional properties of RNAs. In this Review, we focus on reversible methylation through the most prevalent mammalian mRNA internal modification, N(6)-methyladenosine (m(6)A). Recent studies have discovered protein 'writers', 'erasers' and 'readers' of this RNA chemical mark, as well as its dynamic deposition on mRNA and other types of nuclear RNA. These findings strongly indicate dynamic regulatory roles that are analogous to the well-known reversible epigenetic modifications of DNA and histone proteins. This reversible RNA methylation adds a new dimension to the developing picture of post-transcriptional regulation of gene expression.

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Year:  2014        PMID: 24662220     DOI: 10.1038/nrg3724

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  119 in total

1.  Molecular biology. Methylation talk between histones and DNA.

Authors:  A Bird
Journal:  Science       Date:  2001-12-07       Impact factor: 47.728

Review 2.  MicroRNAs: small RNAs with a big role in gene regulation.

Authors:  Lin He; Gregory J Hannon
Journal:  Nat Rev Genet       Date:  2004-07       Impact factor: 53.242

Review 3.  P bodies: at the crossroads of post-transcriptional pathways.

Authors:  Ana Eulalio; Isabelle Behm-Ansmant; Elisa Izaurralde
Journal:  Nat Rev Mol Cell Biol       Date:  2007-01       Impact factor: 94.444

4.  JmjC-domain-containing proteins and histone demethylation.

Authors:  Robert J Klose; Eric M Kallin; Yi Zhang
Journal:  Nat Rev Genet       Date:  2006-09       Impact factor: 53.242

5.  Structure of the yeast tRNA m7G methylation complex.

Authors:  Nicolas Leulliot; Maxime Chaillet; Dominique Durand; Nathalie Ulryck; Karine Blondeau; Herman van Tilbeurgh
Journal:  Structure       Date:  2008-01       Impact factor: 5.006

Review 6.  Toll-like receptor and RIG-I-like receptor signaling.

Authors:  Taro Kawai; Shizuo Akira
Journal:  Ann N Y Acad Sci       Date:  2008-11       Impact factor: 5.691

Review 7.  RNA nucleotide methylation.

Authors:  Yuri Motorin; Mark Helm
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-03-23       Impact factor: 9.957

8.  Sequences containing methylated nucleotides at the 5' termini of messenger RNAs: possible implications for processing.

Authors:  F Rottman; A J Shatkin; R P Perry
Journal:  Cell       Date:  1974-11       Impact factor: 41.582

Review 9.  Regulation of cytoplasmic mRNA decay.

Authors:  Daniel R Schoenberg; Lynne E Maquat
Journal:  Nat Rev Genet       Date:  2012-03-06       Impact factor: 53.242

10.  The fat mass and obesity associated gene (Fto) regulates activity of the dopaminergic midbrain circuitry.

Authors:  Martin E Hess; Simon Hess; Kate D Meyer; Linda A W Verhagen; Linda Koch; Hella S Brönneke; Marcelo O Dietrich; Sabine D Jordan; Yogesh Saletore; Olivier Elemento; Bengt F Belgardt; Thomas Franz; Tamas L Horvath; Ulrich Rüther; Samie R Jaffrey; Peter Kloppenburg; Jens C Brüning
Journal:  Nat Neurosci       Date:  2013-06-30       Impact factor: 24.884

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  587 in total

Review 1.  Epigenetic regulation of early neural fate commitment.

Authors:  Yunbo Qiao; Xianfa Yang; Naihe Jing
Journal:  Cell Mol Life Sci       Date:  2016-01-22       Impact factor: 9.261

2.  RNA polymerase II promoter-proximal pausing in mammalian long non-coding genes.

Authors:  Heeyoun Bunch; Brian P Lawney; Adam Burkholder; Duanduan Ma; Xiaofeng Zheng; Shmulik Motola; David C Fargo; Stuart S Levine; Yaoyu E Wang; Guang Hu
Journal:  Genomics       Date:  2016-07-16       Impact factor: 5.736

3.  N6-methyladenine DNA Modification in Glioblastoma.

Authors:  Qi Xie; Tao P Wu; Ryan C Gimple; Zheng Li; Briana C Prager; Qiulian Wu; Yang Yu; Pengcheng Wang; Yinsheng Wang; David U Gorkin; Cheng Zhang; Alexis V Dowiak; Kaixuan Lin; Chun Zeng; Yinghui Sui; Leo J Y Kim; Tyler E Miller; Li Jiang; Christine H Lee; Zhi Huang; Xiaoguang Fang; Kui Zhai; Stephen C Mack; Maike Sander; Shideng Bao; Amber E Kerstetter-Fogle; Andrew E Sloan; Andrew Z Xiao; Jeremy N Rich
Journal:  Cell       Date:  2018-11-01       Impact factor: 41.582

4.  N(6)-Methyladenosine RNA Modification Regulates Shoot Stem Cell Fate in Arabidopsis.

Authors:  Lisha Shen; Zhe Liang; Xiaofeng Gu; Ying Chen; Zhi Wei Norman Teo; Xingliang Hou; Weiling Maggie Cai; Peter C Dedon; Lu Liu; Hao Yu
Journal:  Dev Cell       Date:  2016-07-07       Impact factor: 12.270

5.  Structural Basis for the Discriminative Recognition of N6-Methyladenosine RNA by the Human YT521-B Homology Domain Family of Proteins.

Authors:  Chao Xu; Ke Liu; Hazem Ahmed; Peter Loppnau; Matthieu Schapira; Jinrong Min
Journal:  J Biol Chem       Date:  2015-08-28       Impact factor: 5.157

6.  FTO-Dependent N 6-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling.

Authors:  Hao Huang; Yinu Wang; Manoj Kandpal; Guangyuan Zhao; Horacio Cardenas; Yanrong Ji; Anusha Chaparala; Edward J Tanner; Jianjun Chen; Ramana V Davuluri; Daniela Matei
Journal:  Cancer Res       Date:  2020-06-30       Impact factor: 12.701

7.  Evolving insights into RNA modifications and their functional diversity in the brain.

Authors:  Sarah Nainar; Paul R Marshall; Christina R Tyler; Robert C Spitale; Timothy W Bredy
Journal:  Nat Neurosci       Date:  2016-09-27       Impact factor: 24.884

8.  High-resolution N(6) -methyladenosine (m(6) A) map using photo-crosslinking-assisted m(6) A sequencing.

Authors:  Kai Chen; Zhike Lu; Xiao Wang; Ye Fu; Guan-Zheng Luo; Nian Liu; Dali Han; Dan Dominissini; Qing Dai; Tao Pan; Chuan He
Journal:  Angew Chem Int Ed Engl       Date:  2014-12-09       Impact factor: 15.336

Review 9.  Epigenetic inheritance of acquired traits through sperm RNAs and sperm RNA modifications.

Authors:  Qi Chen; Wei Yan; Enkui Duan
Journal:  Nat Rev Genet       Date:  2016-10-03       Impact factor: 53.242

10.  The role of N6-methyladenosine RNA methylation in the heat stress response of sheep (Ovis aries).

Authors:  Zengkui Lu; Youji Ma; Qing Li; Enmin Liu; Meilin Jin; Liping Zhang; Caihong Wei
Journal:  Cell Stress Chaperones       Date:  2019-01-30       Impact factor: 3.667

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