Literature DB >> 24657998

The multifunctional nuclear pore complex: a platform for controlling gene expression.

Christopher Ptak1, John D Aitchison2, Richard W Wozniak3.   

Abstract

In addition to their established roles in nucleocytoplasmic transport, the intimate association of nuclear pore complexes (NPCs) with chromatin has long led to speculation that these structures influence peripheral chromatin structure and regulate gene expression. These ideas have their roots in morphological observations, however recent years have seen the identification of physical interactions between NPCs, chromatin, and the transcriptional machinery. Key insights into the molecular functions of specific NPC proteins have uncovered roles for these proteins in transcriptional activation and elongation, mRNA processing, as well as chromatin structure and localization. Here, we review recent studies that provide further molecular detail on the role of specific NPC components as distinct platforms for these chromatin dependent processes.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24657998      PMCID: PMC4061258          DOI: 10.1016/j.ceb.2014.02.001

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  50 in total

1.  Actively transcribed GAL genes can be physically linked to the nuclear pore by the SAGA chromatin modifying complex.

Authors:  Roopa Luthra; Shana C Kerr; Michelle T Harreman; Luciano H Apponi; Milo B Fasken; Suneela Ramineni; Shyam Chaurasia; Sandro R Valentini; Anita H Corbett
Journal:  J Biol Chem       Date:  2006-12-06       Impact factor: 5.157

2.  Cotranscriptional recruitment to the mRNA export receptor Mex67p contributes to nuclear pore anchoring of activated genes.

Authors:  Guennaelle Dieppois; Nahid Iglesias; Françoise Stutz
Journal:  Mol Cell Biol       Date:  2006-09-05       Impact factor: 4.272

3.  Ubiquitin-associated domain of Mex67 synchronizes recruitment of the mRNA export machinery with transcription.

Authors:  Carole Gwizdek; Nahid Iglesias; Manuel S Rodriguez; Batool Ossareh-Nazari; Maria Hobeika; Gilles Divita; Françoise Stutz; Catherine Dargemont
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-20       Impact factor: 11.205

Review 4.  Beyond the sequence: cellular organization of genome function.

Authors:  Tom Misteli
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

5.  Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex.

Authors:  Sue Mei Tan-Wong; Hashanthi D Wijayatilake; Nick J Proudfoot
Journal:  Genes Dev       Date:  2009-11-15       Impact factor: 11.361

6.  A physiological role for gene loops in yeast.

Authors:  Jean-Philippe Lainé; Badri Nath Singh; Shankarling Krishnamurthy; Michael Hampsey
Journal:  Genes Dev       Date:  2009-11-15       Impact factor: 11.361

7.  Nucleoporins directly stimulate expression of developmental and cell-cycle genes inside the nucleoplasm.

Authors:  Bernike Kalverda; Helen Pickersgill; Victor V Shloma; Maarten Fornerod
Journal:  Cell       Date:  2010-02-05       Impact factor: 41.582

8.  Chromatin-bound nuclear pore components regulate gene expression in higher eukaryotes.

Authors:  Maya Capelson; Yun Liang; Roberta Schulte; William Mair; Ulrich Wagner; Martin W Hetzer
Journal:  Cell       Date:  2010-02-05       Impact factor: 41.582

9.  Sus1 is recruited to coding regions and functions during transcription elongation in association with SAGA and TREX2.

Authors:  Pau Pascual-García; Chhabi K Govind; Ethel Queralt; Bernardo Cuenca-Bono; Ana Llopis; Sebastián Chavez; Alan G Hinnebusch; Susana Rodríguez-Navarro
Journal:  Genes Dev       Date:  2008-10-15       Impact factor: 11.361

10.  DNA zip codes control an ancient mechanism for gene targeting to the nuclear periphery.

Authors:  Sara Ahmed; Donna G Brickner; William H Light; Ivelisse Cajigas; Michele McDonough; Alexander B Froyshteter; Tom Volpe; Jason H Brickner
Journal:  Nat Cell Biol       Date:  2010-01-24       Impact factor: 28.824

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  45 in total

1.  Linker Nups connect the nuclear pore complex inner ring with the outer ring and transport channel.

Authors:  Jessica Fischer; Roman Teimer; Stefan Amlacher; Ruth Kunze; Ed Hurt
Journal:  Nat Struct Mol Biol       Date:  2015-09-07       Impact factor: 15.369

2.  Intron or no intron: a matter for nuclear pore complexes.

Authors:  Amandine Bonnet; Benoit Palancade
Journal:  Nucleus       Date:  2015-12-28       Impact factor: 4.197

3.  Whole Exome Sequencing Identifies Truncating Variants in Nuclear Envelope Genes in Patients With Cardiovascular Disease.

Authors:  Gloria T Haskell; Brian C Jensen; Leigh Ann Samsa; Daniel Marchuk; Wei Huang; Cecile Skrzynia; Christian Tilley; Bryce A Seifert; Edgar A Rivera-Muñoz; Beverly Koller; Kirk C Wilhelmsen; Jiandong Liu; Hassan Alhosaini; Karen E Weck; James P Evans; Jonathan S Berg
Journal:  Circ Cardiovasc Genet       Date:  2017-06

Review 4.  The nuclear pore complex: understanding its function through structural insight.

Authors:  Martin Beck; Ed Hurt
Journal:  Nat Rev Mol Cell Biol       Date:  2016-12-21       Impact factor: 94.444

5.  Ribosome-stalk biogenesis is coupled with recruitment of nuclear-export factor to the nascent 60S subunit.

Authors:  Anshuk Sarkar; Markus Pech; Matthias Thoms; Roland Beckmann; Ed Hurt
Journal:  Nat Struct Mol Biol       Date:  2016-10-24       Impact factor: 15.369

6.  Human Nup98 regulates the localization and activity of DExH/D-box helicase DHX9.

Authors:  Juliana S Capitanio; Ben Montpetit; Richard W Wozniak
Journal:  Elife       Date:  2017-02-21       Impact factor: 8.140

Review 7.  The nuclear envelope: an intriguing focal point for neurogenetic disease.

Authors:  Howard J Worman; William T Dauer
Journal:  Neurotherapeutics       Date:  2014-10       Impact factor: 7.620

8.  Nup98 promotes antiviral gene expression to restrict RNA viral infection in Drosophila.

Authors:  Debasis Panda; Pau Pascual-Garcia; Margaret Dunagin; Matthew Tudor; Kaycie C Hopkins; Jie Xu; Beth Gold; Arjun Raj; Maya Capelson; Sara Cherry
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-02       Impact factor: 11.205

9.  Integrative structure and functional anatomy of a nuclear pore complex.

Authors:  Seung Joong Kim; Javier Fernandez-Martinez; Ilona Nudelman; Yi Shi; Wenzhu Zhang; Barak Raveh; Thurston Herricks; Brian D Slaughter; Joanna A Hogan; Paula Upla; Ilan E Chemmama; Riccardo Pellarin; Ignacia Echeverria; Manjunatha Shivaraju; Azraa S Chaudhury; Junjie Wang; Rosemary Williams; Jay R Unruh; Charles H Greenberg; Erica Y Jacobs; Zhiheng Yu; M Jason de la Cruz; Roxana Mironska; David L Stokes; John D Aitchison; Martin F Jarrold; Jennifer L Gerton; Steven J Ludtke; Christopher W Akey; Brian T Chait; Andrej Sali; Michael P Rout
Journal:  Nature       Date:  2018-03-14       Impact factor: 49.962

10.  BioID Identification of Lamin-Associated Proteins.

Authors:  Aaron A Mehus; Ruthellen H Anderson; Kyle J Roux
Journal:  Methods Enzymol       Date:  2015-09-26       Impact factor: 1.600

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