Literature DB >> 24638820

An updated model for nitrate uptake modelling in plants. I. Functional component: cross-combination of flow-force interpretation of nitrate uptake isotherms, and environmental and in planta regulation of nitrate influx.

Erwan Le Deunff1, Philippe Malagoli.   

Abstract

BACKGROUND AND AIMS: In spite of major breakthroughs in the last three decades in the identification of root nitrate uptake transporters in plants and the associated regulation of nitrate transport activities, a simplified and operational modelling approach for nitrate uptake is still lacking. This is due mainly to the difficulty in linking the various regulations of nitrate transport that act at different levels of time and on different spatial scales.
METHODS: A cross-combination of a Flow-Force approach applied to nitrate influx isotherms and experimentally determined environmental and in planta regulation is used to model nitrate in oilseed rape, Brassica napus. In contrast to 'Enzyme-Substrate' interpretations, a Flow-Force modelling approach considers the root as a single catalytic structure and does not infer hypothetical cellular processes among nitrate transporter activities across cellular layers in the mature roots. In addition, this approach accounts for the driving force on ion transport based on the gradient of electrochemical potential, which is more appropriate from a thermodynamic viewpoint. KEY RESULTS AND
CONCLUSIONS: Use of a Flow-Force formalism on nitrate influx isotherms leads to the development of a new conceptual mechanistic basis to model more accurately N uptake by a winter oilseed rape crop under field conditions during the whole growth cycle. This forms the functional component of a proposed new structure-function mechanistic model of N uptake.

Entities:  

Keywords:  Brassica napus; Flow–Force interpretation; N uptake modelling; Nitrate uptake isotherms; functional–structural plant model; nitrate influx regulation; nitrogen uptake efficiency; oilseed rape; root development; root longevity; sustainable agriculture

Mesh:

Substances:

Year:  2014        PMID: 24638820      PMCID: PMC3997639          DOI: 10.1093/aob/mcu021

Source DB:  PubMed          Journal:  Ann Bot        ISSN: 0305-7364            Impact factor:   4.357


  57 in total

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Authors:  Allen G Good; Ashok K Shrawat; Douglas G Muench
Journal:  Trends Plant Sci       Date:  2004-12       Impact factor: 18.313

2.  RESOLUTION OF DUAL MECHANISMS OF POTASSIUM ABSORPTION BY BARLEY ROOTS.

Authors:  E Epstein; D W Rains; O E Elzam
Journal:  Proc Natl Acad Sci U S A       Date:  1963-05       Impact factor: 11.205

3.  The Arabidopsis nitrate transporter AtNRT2.1 is targeted to the root plasma membrane.

Authors:  Franck Chopin; Judith Wirth; Marie-France Dorbe; Laurence Lejay; Anne Krapp; Alain Gojon; Françoise Daniel-Vedele
Journal:  Plant Physiol Biochem       Date:  2007-05-03       Impact factor: 4.270

4.  A central role for the nitrate transporter NRT2.1 in the integrated morphological and physiological responses of the root system to nitrogen limitation in Arabidopsis.

Authors:  Tony Remans; Philippe Nacry; Marjorie Pervent; Thomas Girin; Pascal Tillard; Marc Lepetit; Alain Gojon
Journal:  Plant Physiol       Date:  2006-01-13       Impact factor: 8.340

5.  CLC-b-mediated NO-3/H+ exchange across the tonoplast of Arabidopsis vacuoles.

Authors:  Jenny von der Fecht-Bartenbach; Martin Bogner; Marek Dynowski; Uwe Ludewig
Journal:  Plant Cell Physiol       Date:  2010-04-28       Impact factor: 4.927

6.  Non-equilibrium thermodynamics and electrokinetic interpretation of biological systems.

Authors:  M Thellier
Journal:  J Theor Biol       Date:  1971-06       Impact factor: 2.691

7.  A genetic screen for nitrate regulatory mutants captures the nitrate transporter gene NRT1.1.

Authors:  Rongchen Wang; Xiujuan Xing; Yong Wang; Amy Tran; Nigel M Crawford
Journal:  Plant Physiol       Date:  2009-07-24       Impact factor: 8.340

8.  Regulation of the nitrate transporter gene AtNRT2.1 in Arabidopsis thaliana: responses to nitrate, amino acids and developmental stage.

Authors:  Patricia Nazoa; J John Vidmar; Timothy J Tranbarger; Karine Mouline; Isabelle Damiani; Pascal Tillard; Degen Zhuo; Anthony D M Glass; Bruno Touraine
Journal:  Plant Mol Biol       Date:  2003-06       Impact factor: 4.076

Review 9.  Root based approaches to improving nitrogen use efficiency in plants.

Authors:  Trevor Garnett; Vanessa Conn; Brent N Kaiser
Journal:  Plant Cell Environ       Date:  2009-06-10       Impact factor: 7.228

10.  Nitrate transport in cucumber leaves is an inducible process involving an increase in plasma membrane H⁺-ATPase activity and abundance.

Authors:  Miroslav Nikolic; Stefano Cesco; Rossella Monte; Nicola Tomasi; Stefano Gottardi; Anita Zamboni; Roberto Pinton; Zeno Varanini
Journal:  BMC Plant Biol       Date:  2012-05-09       Impact factor: 4.215

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  6 in total

Review 1.  Breaking conceptual locks in modelling root absorption of nutrients: reopening the thermodynamic viewpoint of ion transport across the root.

Authors:  Erwan Le Deunff; Philippe Malagoli
Journal:  Ann Bot       Date:  2014-12       Impact factor: 4.357

Review 2.  Targeting Root Ion Uptake Kinetics to Increase Plant Productivity and Nutrient Use Efficiency.

Authors:  Marcus Griffiths; Larry M York
Journal:  Plant Physiol       Date:  2020-02-06       Impact factor: 8.340

3.  An updated model for nitrate uptake modelling in plants. II. Assessment of active root involvement in nitrate uptake based on integrated root system age: measured versus modelled outputs.

Authors:  Philippe Malagoli; Erwan Le Deunff
Journal:  Ann Bot       Date:  2014-04-06       Impact factor: 4.357

4.  Developmental and physiological responses of Brachypodium distachyon to fluctuating nitrogen availability.

Authors:  L C David; T Girin; E Fleurisson; E Phommabouth; A Mahfoudhi; S Citerne; P Berquin; F Daniel-Vedele; A Krapp; S Ferrario-Méry
Journal:  Sci Rep       Date:  2019-03-07       Impact factor: 4.379

5.  Combined Allosteric Responses Explain the Bifurcation in Non-Linear Dynamics of 15N Root Fluxes Under Nutritional Steady-State Conditions for Nitrate.

Authors:  Erwan Le Deunff; Patrick Beauclair; Julien Lecourt; Carole Deleu; Philippe Malagoli
Journal:  Front Plant Sci       Date:  2020-08-28       Impact factor: 5.753

Review 6.  The Thermodynamic Flow-Force Interpretation of Root Nutrient Uptake Kinetics: A Powerful Formalism for Agronomic and Phytoplanktonic Models.

Authors:  Erwan Le Deunff; Pierre-Henri Tournier; Philippe Malagoli
Journal:  Front Physiol       Date:  2016-06-27       Impact factor: 4.566

  6 in total

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