Literature DB >> 24623407

Long non-coding RNAs: new players in ocular neovascularization.

Xue-Dong Xu1, Ke-Ran Li, Xiu-Miao Li, Jin Yao, Jiang Qin, Biao Yan.   

Abstract

Pathological neovascularization are the most prevalent causes of moderate or severe vision loss. Long non-coding RNAs (lncRNAs) have emerged as a novel class of regulatory molecules involved in numerous biological processes and complicated diseases. However, the role of lncRNAs in ocular neovascularization is still unclear. Here, we constructed a murine model of ocular neovascularization, and determined lncRNA expression profiles using microarray analysis. We identified 326 or 51 lncRNAs that were significantly either up-regulated or down-regulated in the vaso-obliteration or neovascularization phase, respectively. Based on Pearson correlation analysis, lncRNAs/mRNAs co-expression networks were constructed. GO enrichment analysis of lncRNAs-co-expressed mRNAs indicated that the biological modules were correlated with chromosome organization, extracellular region and guanylate cyclase activator activity in the vaso-obliteration phase, and correlated with cell proliferation, extracellular region and guanylate cyclase regulator activity in the neovascularization phase. KEGG pathway analysis indicated that MAPK signaling was the most significantly enriched pathway in both phases. Importantly, Vax2os1 and Vax2os2 were not only dynamically expressed in the vaso-obliteration and neovascularization phases, but also significantly altered in the aqueous humor of patients with neovascular age-related macular degeneration (AMD), suggesting a potential role of lncRNAs in the regulation of ocular neovascularization. Taken together, this study provided novel insights into the molecular pathogenesis of ocular neovascularization. The intervention of dysregulated lncRNA could become a potential target for the prevention and treatment of ocular vascular diseases.

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Year:  2014        PMID: 24623407     DOI: 10.1007/s11033-014-3320-5

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  38 in total

1.  The long noncoding RNA Vax2os1 controls the cell cycle progression of photoreceptor progenitors in the mouse retina.

Authors:  Nicola Meola; Mariateresa Pizzo; Giovanna Alfano; Enrico Maria Surace; Sandro Banfi
Journal:  RNA       Date:  2011-11-29       Impact factor: 4.942

Review 2.  Tightly bound to DNA proteins: possible universal substrates for intranuclear processes.

Authors:  N Sjakste; K Bielskiene; L Bagdoniene; D Labeikyte; A Gutcaits; Y Vassetzky; T Sjakste
Journal:  Gene       Date:  2011-10-06       Impact factor: 3.688

Review 3.  The MAPK cascades: signaling components, nuclear roles and mechanisms of nuclear translocation.

Authors:  Alexander Plotnikov; Eldar Zehorai; Shiri Procaccia; Rony Seger
Journal:  Biochim Biophys Acta       Date:  2010-12-16

Review 4.  Crosstalk in NF-κB signaling pathways.

Authors:  Andrea Oeckinghaus; Matthew S Hayden; Sankar Ghosh
Journal:  Nat Immunol       Date:  2011-07-19       Impact factor: 25.606

Review 5.  Molecular mechanisms of long noncoding RNAs.

Authors:  Kevin C Wang; Howard Y Chang
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

Review 6.  Guanylyl cyclase structure, function and regulation.

Authors:  Lincoln R Potter
Journal:  Cell Signal       Date:  2011-09-10       Impact factor: 4.315

7.  Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence.

Authors:  Eugene Berezikov; Nicolas Robine; Anastasia Samsonova; Jakub O Westholm; Ammar Naqvi; Jui-Hung Hung; Katsutomo Okamura; Qi Dai; Diane Bortolamiol-Becet; Raquel Martin; Yongjun Zhao; Phillip D Zamore; Gregory J Hannon; Marco A Marra; Zhiping Weng; Norbert Perrimon; Eric C Lai
Journal:  Genome Res       Date:  2010-12-22       Impact factor: 9.043

Review 8.  lincRNAs: genomics, evolution, and mechanisms.

Authors:  Igor Ulitsky; David P Bartel
Journal:  Cell       Date:  2013-07-03       Impact factor: 41.582

Review 9.  Long non-coding RNAs: modulators of nuclear structure and function.

Authors:  Jan H Bergmann; David L Spector
Journal:  Curr Opin Cell Biol       Date:  2013-09-20       Impact factor: 8.382

10.  Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network.

Authors:  Qi Liao; Changning Liu; Xiongying Yuan; Shuli Kang; Ruoyu Miao; Hui Xiao; Guoguang Zhao; Haitao Luo; Dechao Bu; Haitao Zhao; Geir Skogerbø; Zhongdao Wu; Yi Zhao
Journal:  Nucleic Acids Res       Date:  2011-01-18       Impact factor: 16.971

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  21 in total

Review 1.  LncRNAs in ocular neovascularizations.

Authors:  Yacouba Cissé; Lang Bai; Min-Ting Chen
Journal:  Int J Ophthalmol       Date:  2019-12-18       Impact factor: 1.779

2.  Variable Levels of Long Noncoding RNA Expression in DNA Mismatch Repair-Proficient Early-Stage Colon Cancer.

Authors:  Qian Li; Nanshan Li; Yueqiong Lao; Wu Lin; Guojun Jiang; Nan Wei; Canghai Wang; Kuiliang Liu; Jing Wu
Journal:  Dig Dis Sci       Date:  2017-02-03       Impact factor: 3.199

3.  Identification of circulating lncRNA in chronic kidney disease based on bioinformatics analysis.

Authors:  Rong Huang; Li-Jing Sun
Journal:  Exp Biol Med (Maywood)       Date:  2022-06-25

4.  Non-coding RNA profiling of the developing murine lens.

Authors:  Shahid Y Khan; Sean F Hackett; S Amer Riazuddin
Journal:  Exp Eye Res       Date:  2016-01-22       Impact factor: 3.467

5.  The long noncoding RNA TUG1 regulates blood-tumor barrier permeability by targeting miR-144.

Authors:  Heng Cai; Yixue Xue; Ping Wang; Zhenhua Wang; Zhen Li; Yi Hu; Zhiqing Li; Xiuli Shang; Yunhui Liu
Journal:  Oncotarget       Date:  2015-08-14

6.  Long Non-coding RNA TUSC7, a Target of miR-23b, Plays Tumor-Suppressing Roles in Human Gliomas.

Authors:  Chao Shang; Yan Guo; Yang Hong; Yi-Xue Xue
Journal:  Front Cell Neurosci       Date:  2016-10-06       Impact factor: 5.505

7.  Pathogenic role of lncRNA-MALAT1 in endothelial cell dysfunction in diabetes mellitus.

Authors:  J-Y Liu; J Yao; X-M Li; Y-C Song; X-Q Wang; Y-J Li; B Yan; Q Jiang
Journal:  Cell Death Dis       Date:  2014-10-30       Impact factor: 8.469

8.  MicroRNA-210 Plays a Critical Role in the Angiogenic Effect of Isoprenaline on Human Umbilical Vein Endothelial Cells via Regulation of Noncoding RNAs.

Authors:  You-You Yan; Zhi-Hui Wang; Lei Zhao; Dan-Dan Song; Chao Qi; Lu-Lu Liu; Jun-Nan Wang
Journal:  Chin Med J (Engl)       Date:  2016-11-20       Impact factor: 2.628

Review 9.  Novel Insights into the Role of Long Noncoding RNA in Ocular Diseases.

Authors:  Fang Li; Xuyang Wen; He Zhang; Xianqun Fan
Journal:  Int J Mol Sci       Date:  2016-03-31       Impact factor: 5.923

10.  Role of long non-coding RNA MIAT in proliferation, apoptosis and migration of lens epithelial cells: a clinical and in vitro study.

Authors:  Yi Shen; Ling-Feng Dong; Rong-Mei Zhou; Jin Yao; Yu-Chen Song; Hong Yang; Qin Jiang; Biao Yan
Journal:  J Cell Mol Med       Date:  2016-01-28       Impact factor: 5.310

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