Literature DB >> 2461550

A sequence motif in many polymerases.

P Argos1.   

Abstract

A 15-residue sequence motif has been found in many polymerases from various species and involving DNA and RNA dependence and product. The motif is characterized by a Tyr-Gly-Asp-(Thr)-Asp core flanked by hydrophobic spans five residues in length. An mRNA maturase segment is also suggested to display the motif pattern. The aspartates may be important in polymerase function by acting directly in catalysis and/or by binding magnesium.

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Year:  1988        PMID： 2461550      PMCID： PMC338826          DOI： 10.1093/nar/16.21.9909

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  29 in total

1.  Sequence and organization of southern bean mosaic virus genomic RNA.

Authors:  S X Wu; C A Rinehart; P Kaesberg
Journal:  Virology       Date:  1987-11       Impact factor: 3.616

2.  The protein identification resource (PIR).

Authors:  K E Sidman; D G George; W C Barker; L T Hunt
Journal:  Nucleic Acids Res       Date:  1988-03-11       Impact factor: 16.971

3.  Structure and evolution of prokaryotic and eukaryotic RNA polymerases: a model.

Authors:  D Armaleo
Journal:  J Theor Biol       Date:  1987-08-07       Impact factor: 2.691

4.  Analysis of sequence-similar pentapeptides in unrelated protein tertiary structures. Strategies for protein folding and a guide for site-directed mutagenesis.

Authors:  P Argos
Journal:  J Mol Biol       Date:  1987-09-20       Impact factor: 5.469

5.  Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP.

Authors:  D L Ollis; P Brick; R Hamlin; N G Xuong; T A Steitz
Journal:  Nature       Date:  1985 Feb 28-Mar 6       Impact factor: 49.962

6.  Interference with viral infection by defective RNA replicase.

Authors:  Y Inokuchi; A Hirashima
Journal:  J Virol       Date:  1987-12       Impact factor: 5.103

7.  RNA-dependent RNA polymerase activity in two morphologically different white clover cryptic viruses.

Authors:  G Boccardo; G P Accotto
Journal:  Virology       Date:  1988-04       Impact factor: 3.616

8.  RNA-dependent DNA polymerase activity in Paramecium tetraurelia: what for?

Authors:  M D Katinka
Journal:  Eur J Biochem       Date:  1987-03-16

9.  Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses.

Authors:  G Kamer; P Argos
Journal:  Nucleic Acids Res       Date:  1984-09-25       Impact factor: 16.971

10.  Evidence for a repeating domain in type I restriction enzymes.

Authors:  P Argos
Journal:  EMBO J       Date:  1985-05       Impact factor: 11.598
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  133 in total

1.  Molecular evidence for the existence of two distinct subgroups in cucumber mosaic cucumovirus.

Authors:  D Szilassy; K Salánki; E Balázs
Journal:  Virus Genes       Date:  1999       Impact factor: 2.332

2.  Sequences at the 3' untranslated region of bamboo mosaic potexvirus RNA interact with the viral RNA-dependent RNA polymerase.

Authors:  C Y Huang; Y L Huang; M Meng; Y H Hsu; C H Tsai
Journal:  J Virol       Date:  2001-03       Impact factor: 5.103

Review 3.  Evolution and origins of tobamoviruses.

Authors:  A Gibbs
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1999-03-29       Impact factor: 6.237

4.  A structural and primary sequence comparison of the viral RNA-dependent RNA polymerases.

Authors:  Jeremy A Bruenn
Journal:  Nucleic Acids Res       Date:  2003-04-01       Impact factor: 16.971

5.  A redefinition of the Asp-Asp domain of reverse transcriptases.

Authors:  A M Velasco; L Medrano; A Lazcano; J Oró
Journal:  J Mol Evol       Date:  1992-12       Impact factor: 2.395

6.  RNA-dependent RNA polymerase consensus sequence of the L-A double-stranded RNA virus: definition of essential domains.

Authors:  J C Ribas; R B Wickner
Journal:  Proc Natl Acad Sci U S A       Date:  1992-03-15       Impact factor: 11.205

7.  Relationships among the positive strand and double-strand RNA viruses as viewed through their RNA-dependent RNA polymerases.

Authors:  J A Bruenn
Journal:  Nucleic Acids Res       Date:  1991-01-25       Impact factor: 16.971

8.  Molecular characterization of the VP1 gene of a Mexican isolate of infectious pancreatic necrosis virus.

Authors:  Magda Barrera-Mejía; José Simón-Martínez; Raúl Ulloa-Arvizu; Celene Salgado-Miranda; Edgardo Soriano-Vargas
Journal:  Can J Vet Res       Date:  2010-07       Impact factor: 1.310

9.  Cloning and molecular analysis of two different ILV5 genes from a brewing strain of Saccharomyces cerevisiae.

Authors:  Q Xie; A Jiménez
Journal:  Curr Genet       Date:  1994 Nov-Dec       Impact factor: 3.886

10.  Mutational analysis of a conserved motif of Agrobacterium tumefaciens VirD2.

Authors:  A M Vogel; J Yoon; A Das
Journal:  Nucleic Acids Res       Date:  1995-10-25       Impact factor: 16.971
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