Literature DB >> 24607442

Advances in methods for native expression and purification of RNA for structural studies.

Robert T Batey1.   

Abstract

Many RNAs present unique challenges in obtaining material suitable for structural or biophysical characterization. These issues include synthesis of chemically and conformationally homogeneous RNAs, refolding RNA purified using denaturing preparation techniques, and avoiding chemical damage. To address these challenges, new methodologies in RNA expression and purification have been developed seeking to emulate those commonly used for proteins. In this review, recent developments in the preparation of high-quality RNA for structural biology and biophysical applications are discussed, with an emphasis on native methods.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24607442      PMCID: PMC4127115          DOI: 10.1016/j.sbi.2014.01.014

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  63 in total

1.  The RNA chain elongation rate in Escherichia coli depends on the growth rate.

Authors:  U Vogel; K F Jensen
Journal:  J Bacteriol       Date:  1994-05       Impact factor: 3.490

2.  T7 RNA polymerase produces 5' end heterogeneity during in vitro transcription from certain templates.

Authors:  J A Pleiss; M L Derrick; O C Uhlenbeck
Journal:  RNA       Date:  1998-10       Impact factor: 4.942

3.  Synthesis of small RNAs using T7 RNA polymerase.

Authors:  J F Milligan; O C Uhlenbeck
Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

4.  Keeping RNA happy.

Authors:  O C Uhlenbeck
Journal:  RNA       Date:  1995-03       Impact factor: 4.942

5.  Transcribing of Escherichia coli genes with mutant T7 RNA polymerases: stability of lacZ mRNA inversely correlates with polymerase speed.

Authors:  O V Makarova; E M Makarov; R Sousa; M Dreyfus
Journal:  Proc Natl Acad Sci U S A       Date:  1995-12-19       Impact factor: 11.205

6.  Characterization of a set of T7 RNA polymerase active site mutants.

Authors:  G Bonner; E M Lafer; R Sousa
Journal:  J Biol Chem       Date:  1994-10-07       Impact factor: 5.157

7.  Purification of biologically active globin messenger RNA by chromatography on oligothymidylic acid-cellulose.

Authors:  H Aviv; P Leder
Journal:  Proc Natl Acad Sci U S A       Date:  1972-06       Impact factor: 11.205

8.  RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP.

Authors:  Colleen A Kellenberger; Stephen C Wilson; Jade Sales-Lee; Ming C Hammond
Journal:  J Am Chem Soc       Date:  2013-03-21       Impact factor: 15.419

9.  Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates.

Authors:  J F Milligan; D R Groebe; G W Witherell; O C Uhlenbeck
Journal:  Nucleic Acids Res       Date:  1987-11-11       Impact factor: 16.971

10.  Mutations in T7 RNA polymerase that support the proposal for a common polymerase active site structure.

Authors:  G Bonner; D Patra; E M Lafer; R Sousa
Journal:  EMBO J       Date:  1992-10       Impact factor: 11.598

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  8 in total

1.  Rapid NMR screening of RNA secondary structure and binding.

Authors:  Christina Helmling; Sara Keyhani; Florian Sochor; Boris Fürtig; Martin Hengesbach; Harald Schwalbe
Journal:  J Biomol NMR       Date:  2015-07-19       Impact factor: 2.835

2.  Native Purification and Analysis of Long RNAs.

Authors:  Isabel Chillón; Marco Marcia; Michal Legiewicz; Fei Liu; Srinivas Somarowthu; Anna Marie Pyle
Journal:  Methods Enzymol       Date:  2015-02-27       Impact factor: 1.600

3.  HOTAIR forms an intricate and modular secondary structure.

Authors:  Srinivas Somarowthu; Michal Legiewicz; Isabel Chillón; Marco Marcia; Fei Liu; Anna Marie Pyle
Journal:  Mol Cell       Date:  2015-04-09       Impact factor: 17.970

4.  Purification and Structural Characterization of the Long Noncoding RNAs.

Authors:  Allison Yankey; Sean C Clark; Michael C Owens; Srinivas Somarowthu
Journal:  Methods Mol Biol       Date:  2021

Review 5.  Regulation of Gene Expression Through Effector-dependent Conformational Switching by Cobalamin Riboswitches.

Authors:  Shelby R Lennon; Robert T Batey
Journal:  J Mol Biol       Date:  2022-04-12       Impact factor: 6.151

Review 6.  An Update on Self-Amplifying mRNA Vaccine Development.

Authors:  Anna K Blakney; Shell Ip; Andrew J Geall
Journal:  Vaccines (Basel)       Date:  2021-01-28

7.  A viroid-derived system to produce large amounts of recombinant RNA in Escherichia coli.

Authors:  José-Antonio Daròs; Verónica Aragonés; Teresa Cordero
Journal:  Sci Rep       Date:  2018-01-30       Impact factor: 4.379

Review 8.  A guide to large-scale RNA sample preparation.

Authors:  Lorenzo Baronti; Hampus Karlsson; Maja Marušič; Katja Petzold
Journal:  Anal Bioanal Chem       Date:  2018-03-15       Impact factor: 4.142

  8 in total

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