Literature DB >> 24600007

Comparison of varicella-zoster virus RNA sequences in human neurons and fibroblasts.

Nicholas L Baird1, Jacqueline L Bowlin, Randall J Cohrs, Don Gilden, Kenneth L Jones.   

Abstract

Varicella-zoster virus (VZV) infection causes varicella, after which the virus becomes latent in ganglionic neurons. In tissue culture, VZV-infected human neurons remain viable at 2 weeks, whereas fibroblasts develop cytopathology. Next-generation RNA sequencing was used to compare VZV transcriptomes in neurons and fibroblasts and identified only 12 differentially transcribed genes of the 70 annotated VZV open reading frames (ORFs), suggesting that defective virus transcription does not account for the lack of cell death in VZV-infected neurons in vitro.

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Mesh:

Year:  2014        PMID: 24600007      PMCID: PMC4019124          DOI: 10.1128/JVI.00476-14

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  10 in total

1.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

2.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

3.  Aberrant virion assembly and limited glycoprotein C production in varicella-zoster virus-infected neurons.

Authors:  Charles Grose; Xiaoli Yu; Randall J Cohrs; John E Carpenter; Jacqueline L Bowlin; Don Gilden
Journal:  J Virol       Date:  2013-06-26       Impact factor: 5.103

4.  Restricted varicella-zoster virus transcription in human trigeminal ganglia obtained soon after death.

Authors:  Werner J D Ouwendijk; Alexander Choe; Maria A Nagel; Don Gilden; Albert D M E Osterhaus; Randall J Cohrs; Georges M G M Verjans
Journal:  J Virol       Date:  2012-06-27       Impact factor: 5.103

5.  Simian varicella virus gene expression during acute and latent infection of rhesus macaques.

Authors:  Christine Meyer; Amelia Kerns; Alex Barron; Craig Kreklywich; Daniel N Streblow; Ilhem Messaoudi
Journal:  J Neurovirol       Date:  2011-11-04       Impact factor: 2.643

6.  Prevalence and abundance of latently transcribed varicella-zoster virus genes in human ganglia.

Authors:  Randall J Cohrs; Donald H Gilden
Journal:  J Virol       Date:  2006-12-27       Impact factor: 5.103

7.  Varicella-zoster virus transcriptome in latently infected human ganglia.

Authors:  Maria A Nagel; Alexander Choe; Igor Traktinskiy; Robert Cordery-Cotter; Don Gilden; Randall J Cohrs
Journal:  J Virol       Date:  2010-12-22       Impact factor: 5.103

8.  Differential analysis of gene regulation at transcript resolution with RNA-seq.

Authors:  Cole Trapnell; David G Hendrickson; Martin Sauvageau; Loyal Goff; John L Rinn; Lior Pachter
Journal:  Nat Biotechnol       Date:  2012-12-09       Impact factor: 54.908

9.  Fast and SNP-tolerant detection of complex variants and splicing in short reads.

Authors:  Thomas D Wu; Serban Nacu
Journal:  Bioinformatics       Date:  2010-02-10       Impact factor: 6.937

10.  Varicella zoster virus infection of highly pure terminally differentiated human neurons.

Authors:  Xiaoli Yu; Scott Seitz; Tiffany Pointon; Jacqueline L Bowlin; Randall J Cohrs; Stipan Jonjić; Jürgen Haas; Mary Wellish; Don Gilden
Journal:  J Neurovirol       Date:  2012-12-12       Impact factor: 3.739

  10 in total
  44 in total

1.  Elucidating the Role of the Maternal Embryonic Leucine Zipper Kinase in Adrenocortical Carcinoma.

Authors:  Katja Kiseljak-Vassiliades; Yu Zhang; Adwitiya Kar; Raud Razzaghi; Mei Xu; Katherine Gowan; Christopher D Raeburn; Maria Albuja-Cruz; Kenneth L Jones; Hilary Somerset; Lauren Fishbein; Stephen Leong; Margaret E Wierman
Journal:  Endocrinology       Date:  2018-07-01       Impact factor: 4.736

2.  Varicella zoster virus infection of human fetal lung cells alters mitochondrial morphology.

Authors:  Amy C Keller; Hussain Badani; P Mason McClatchey; Nicholas L Baird; Jacqueline L Bowlin; Ron Bouchard; Guey-Chuen Perng; Jane E B Reusch; Benedikt B Kaufer; Don Gilden; Aamir Shahzad; Peter G E Kennedy; Randall J Cohrs
Journal:  J Neurovirol       Date:  2016-05-31       Impact factor: 2.643

3.  Dysregulated Glycoprotein B-Mediated Cell-Cell Fusion Disrupts Varicella-Zoster Virus and Host Gene Transcription during Infection.

Authors:  Stefan L Oliver; Edward Yang; Ann M Arvin
Journal:  J Virol       Date:  2016-12-16       Impact factor: 5.103

4.  AP-2α and AP-2β cooperatively orchestrate homeobox gene expression during branchial arch patterning.

Authors:  Eric Van Otterloo; Hong Li; Kenneth L Jones; Trevor Williams
Journal:  Development       Date:  2018-01-25       Impact factor: 6.868

5.  Interferon Gamma Prolongs Survival of Varicella-Zoster Virus-Infected Human Neurons In Vitro.

Authors:  Nicholas L Baird; Jacqueline L Bowlin; Taylor J Hotz; Randall J Cohrs; Don Gilden
Journal:  J Virol       Date:  2015-05-06       Impact factor: 5.103

6.  Varicella zoster virus DNA does not accumulate in infected human neurons.

Authors:  Nicholas L Baird; Jacqueline L Bowlin; Xiaoli Yu; Stipan Jonjić; Jürgen Haas; Randall J Cohrs; Don Gilden
Journal:  Virology       Date:  2014-05-05       Impact factor: 3.616

7.  Interleukin-6 and type 1 interferons inhibit varicella zoster virus replication in human neurons.

Authors:  Christina N Como; Catherine M Pearce; Randall J Cohrs; Nicholas L Baird
Journal:  Virology       Date:  2018-07-04       Impact factor: 3.616

Review 8.  A comparison of herpes simplex virus type 1 and varicella-zoster virus latency and reactivation.

Authors:  Peter G E Kennedy; Joel Rovnak; Hussain Badani; Randall J Cohrs
Journal:  J Gen Virol       Date:  2015-03-20       Impact factor: 3.891

9.  RNA sequencing and pathway analysis identify tumor necrosis factor alpha driven small proline-rich protein dysregulation in chronic rhinosinusitis.

Authors:  Vijay R Ramakrishnan; Joseph R Gonzalez; Sarah E Cooper; Henry P Barham; Catherine B Anderson; Eric D Larson; Carlyne D Cool; John D Diller; Kenneth Jones; Sue C Kinnamon
Journal:  Am J Rhinol Allergy       Date:  2017-09-01       Impact factor: 2.467

10.  Transcriptome-wide characterization of human cytomegalovirus in natural infection and experimental latency.

Authors:  Shu Cheng; Katie Caviness; Jason Buehler; Megan Smithey; Janko Nikolich-Žugich; Felicia Goodrum
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-20       Impact factor: 11.205

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