Literature DB >> 24597943

Full reaction mechanism of nitrile hydratase: a cyclic intermediate and an unexpected disulfide switch.

Kathrin H Hopmann1.   

Abstract

The full reaction mechanism of nitrile hydratase has remained elusive, despite extensive theoretical and experimental studies. A novel reaction mechanism for nitrile hydratase is proposed here, with remarkable features and very feasible barriers. Our results, obtained on the basis of large quantum-mechanical active site models, identify Cys-SO(-) as the nucleophile, performing a direct nucleophilic attack on the metal-coordinated nitrile. This implies the formation of an intriguing cyclic intermediate, which subsequently is cleaved through attack of the axial cysteine on the sulfenate, thereby forming a disulfide bond. In this mechanism, nitrile hydration occurs without directly involving a water molecule. Subsequent water-mediated disulfide cleavage regenerates the active site. This is the first example of a disulfide switch directly implicated in an enzymatic reaction mechanism.

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Year:  2014        PMID: 24597943     DOI: 10.1021/ic500091k

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  9 in total

1.  A Protein-derived Oxygen Is the Source of the Amide Oxygen of Nitrile Hydratases.

Authors:  Micah T Nelp; Yang Song; Vicki H Wysocki; Vahe Bandarian
Journal:  J Biol Chem       Date:  2016-02-10       Impact factor: 5.157

Review 2.  Advances in cloning, structural and bioremediation aspects of nitrile hydratases.

Authors:  K Supreetha; Saroja Narsing Rao; D Srividya; H S Anil; S Kiran
Journal:  Mol Biol Rep       Date:  2019-06-14       Impact factor: 2.316

3.  Iron-Dependent Enzyme Catalyzes the Initial Step in Biodegradation of N-Nitroglycine by Variovorax sp. Strain JS1663.

Authors:  Kristina M Mahan; Hangping Zheng; Tekle T Fida; Ronald J Parry; David E Graham; Jim C Spain
Journal:  Appl Environ Microbiol       Date:  2017-07-17       Impact factor: 4.792

4.  Multiple States of Nitrile Hydratase from Rhodococcus equi TG328-2: Structural and Mechanistic Insights from Electron Paramagnetic Resonance and Density Functional Theory Studies.

Authors:  Natalia Stein; Natalie Gumataotao; Natalia Hajnas; Rui Wu; K P Wasantha Lankathilaka; Uwe T Bornscheuer; Dali Liu; Adam T Fiedler; Richard C Holz; Brian Bennett
Journal:  Biochemistry       Date:  2017-06-02       Impact factor: 3.162

5.  Analyzing the catalytic role of active site residues in the Fe-type nitrile hydratase from Comamonas testosteroni Ni1.

Authors:  Salette Martinez; Rui Wu; Karoline Krzywda; Veronika Opalka; Hei Chan; Dali Liu; Richard C Holz
Journal:  J Biol Inorg Chem       Date:  2015-06-16       Impact factor: 3.358

6.  Identification of an Intermediate Species along the Nitrile Hydratase Reaction Pathway by EPR Spectroscopy.

Authors:  Wasantha Lankathilaka Karunagala Pathiranage; Natalie Gumataotao; Adam T Fiedler; Richard C Holz; Brian Bennett
Journal:  Biochemistry       Date:  2021-11-29       Impact factor: 3.162

7.  Theoretical Study on the Mechanism of the Acylate Reaction of β-Lactamase.

Authors:  Wen-Mei Wei; Yan-Li Xu; Ren-Hui Zheng; Tingting Zhao; Weijun Fang; Yi-De Qin
Journal:  ACS Omega       Date:  2021-05-07

8.  Bio-inspired nitrile hydration by peptidic ligands based on L-cysteine, L-methionine or L-penicillamine and pyridine-2,6-dicarboxylic acid.

Authors:  Cillian Byrne; Kate M Houlihan; Prarthana Devi; Paul Jensen; Peter J Rutledge
Journal:  Molecules       Date:  2014-12-12       Impact factor: 4.411

9.  Spectroscopic and Computational Studies of Nitrile Hydratase: Insights into Geometric and Electronic Structure and the Mechanism of Amide Synthesis.

Authors:  Kenneth M Light; Yasuaki Yamanaka; Masafumi Odaka; Edward I Solomon
Journal:  Chem Sci       Date:  2015-07-30       Impact factor: 9.825

  9 in total

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