Literature DB >> 26865634

A Protein-derived Oxygen Is the Source of the Amide Oxygen of Nitrile Hydratases.

Micah T Nelp1, Yang Song2, Vicki H Wysocki2, Vahe Bandarian3.   

Abstract

Nitrile hydratase metalloenzymes are unique and important biocatalysts that are used industrially to produce high value amides from their corresponding nitriles. After more than three decades since their discovery, the mechanism of this class of enzymes is becoming clear with evidence from multiple recent studies that the cysteine-derived sulfenato ligand of the active site metal serves as the nucleophile that initially attacks the nitrile. Herein we describe the first direct evidence from solution phase catalysis that the source of the product carboxamido oxygen is the protein. Using(18)O-labeled water under single turnover conditions and native high resolution protein mass spectrometry, we show that the incorporation of labeled oxygen into both product and protein is turnover-dependent and that only a single oxygen is exchanged into the protein even under multiple turnover conditions, lending significant support to proposals that the post-translationally modified sulfenato group serves as the nucleophile to initiate hydration of nitriles.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  enzyme; enzyme catalysis; enzyme mechanism; metalloenzyme; nitrile hydratase; post-translational modification (PTM); protein chemical modification

Mesh:

Substances:

Year:  2016        PMID: 26865634      PMCID: PMC4824990          DOI: 10.1074/jbc.M115.704791

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  23 in total

1.  Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry.

Authors:  S C Pomerantz; J A McCloskey
Journal:  Methods Enzymol       Date:  1990       Impact factor: 1.600

2.  A novel thermostable nitrile hydratase.

Authors:  R A Pereira; D Graham; F A Rainey; D A Cowan
Journal:  Extremophiles       Date:  1998-08       Impact factor: 2.395

Review 3.  Metalloenzyme nitrile hydratase: structure, regulation, and application to biotechnology.

Authors:  M Kobayashi; S Shimizu
Journal:  Nat Biotechnol       Date:  1998-08       Impact factor: 54.908

4.  Revealing the quaternary structure of a heterogeneous noncovalent protein complex through surface-induced dissociation.

Authors:  Anne E Blackwell; Eric D Dodds; Vahe Bandarian; Vicki H Wysocki
Journal:  Anal Chem       Date:  2011-03-21       Impact factor: 6.986

5.  Arginine 56 mutation in the beta subunit of nitrile hydratase: importance of hydrogen bonding to the non-heme iron center.

Authors:  S R Piersma; M Nojiri; M Tsujimura; T Noguchi; M Odaka; M Yohda; Y Inoue; I Endo
Journal:  J Inorg Biochem       Date:  2000-07-01       Impact factor: 4.155

6.  Crystal structure of cobalt-containing nitrile hydratase.

Authors:  A Miyanaga; S Fushinobu; K Ito; T Wakagi
Journal:  Biochem Biophys Res Commun       Date:  2001-11-16       Impact factor: 3.575

7.  Mutational and structural analysis of cobalt-containing nitrile hydratase on substrate and metal binding.

Authors:  Akimasa Miyanaga; Shinya Fushinobu; Kiyoshi Ito; Hirofumi Shoun; Takayoshi Wakagi
Journal:  Eur J Biochem       Date:  2004-01

8.  Refining the Structural Model of a Heterohexameric Protein Complex: Surface Induced Dissociation and Ion Mobility Provide Key Connectivity and Topology Information.

Authors:  Yang Song; Micah T Nelp; Vahe Bandarian; Vicki H Wysocki
Journal:  ACS Cent Sci       Date:  2015-11-18       Impact factor: 14.553

9.  The alpha subunit of nitrile hydratase is sufficient for catalytic activity and post-translational modification.

Authors:  Micah T Nelp; Andrei V Astashkin; Linda A Breci; Reid M McCarty; Vahe Bandarian
Journal:  Biochemistry       Date:  2014-06-10       Impact factor: 3.162

10.  Spectroscopic and Computational Studies of Nitrile Hydratase: Insights into Geometric and Electronic Structure and the Mechanism of Amide Synthesis.

Authors:  Kenneth M Light; Yasuaki Yamanaka; Masafumi Odaka; Edward I Solomon
Journal:  Chem Sci       Date:  2015-07-30       Impact factor: 9.825

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  3 in total

1.  Multiple States of Nitrile Hydratase from Rhodococcus equi TG328-2: Structural and Mechanistic Insights from Electron Paramagnetic Resonance and Density Functional Theory Studies.

Authors:  Natalia Stein; Natalie Gumataotao; Natalia Hajnas; Rui Wu; K P Wasantha Lankathilaka; Uwe T Bornscheuer; Dali Liu; Adam T Fiedler; Richard C Holz; Brian Bennett
Journal:  Biochemistry       Date:  2017-06-02       Impact factor: 3.162

2.  Identification of an Intermediate Species along the Nitrile Hydratase Reaction Pathway by EPR Spectroscopy.

Authors:  Wasantha Lankathilaka Karunagala Pathiranage; Natalie Gumataotao; Adam T Fiedler; Richard C Holz; Brian Bennett
Journal:  Biochemistry       Date:  2021-11-29       Impact factor: 3.162

3.  The 3rd degree of biomimetism: associating the cavity effect, ZnII coordination and internal base assistance for guest binding and activation.

Authors:  A Parrot; S Collin; G Bruylants; O Reinaud
Journal:  Chem Sci       Date:  2018-05-29       Impact factor: 9.825

  3 in total

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