| Literature DB >> 24586700 |
Jingwei Liu1, Caiyun He1, Qian Xu1, Chengzhong Xing1, Yuan Yuan1.
Abstract
BACKGROUND: Emerging evidence indicated that common polymorphisms of NOD2 might impact individual susceptibility to cancer. However, the results from published studies were inconclusive. The aim of this meta-analysis was to elucidate whether NOD2 polymorphisms were associated with cancer risk.Entities:
Mesh:
Substances:
Year: 2014 PMID: 24586700 PMCID: PMC3930717 DOI: 10.1371/journal.pone.0089340
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Characteristics of eligible studies in this meta-analysis.
| Author | Year | Ethnicity | Cancer type | Controls source | Case | Control | Genotyping method |
| rs2066842 C/T (P268S) | |||||||
| Roberts, R. L. | 2006 | New Zealander | Colorectal cancer | PB | 133 | 201 | ARMS |
| Wex, T. | 2008 | German | Gastric cancer | PB | 167 | 153 | PCR-RFLP |
| Szeliga, J. | 2008 | Polish | Rectal cancer | HB | 51 | 100 | PCR-RFLP |
| Hnatyszyn, A. | 2010 | Polish | Gastric cancer | HB | 17 | 113 | Pyrosequencing |
| rs2066844 C/T (R702W) | |||||||
| Debniak, T. | 2005 | Polish | Melanoma | HB | 470 | 649 | Allele-specific PCR |
| Papaconstantinou, I. | 2005 | Greek | Colorectal cancer | N.A. | 104 | 100 | Allele-specific PCR |
| Rosenstiel, P. | 2006 | German | Gastric MALT lymphoma | HB | 83 | 308 | Taqman |
| Roberts, R. L. | 2006 | New Zealander | Colorectal cancer | PB | 133 | 201 | ARMS |
| Lakatos, P. L. | 2007 | Hungarian | Colorectal cancer | N.A. | 194 | 200 | dHPLC |
| Vogel, U. | 2007 | Danish | Colorectal cancer | PB | 355 | 753 | CE-SSCP |
| Tuupanen, S. | 2007 | Finnish | Colorectal cancer | PB | 953 | 508 | ARMS |
| Szeliga, J. | 2008 | Polish | Rectal cancer | HB | 51 | 100 | PCR-RFLP |
| Suchy, J. | 2008 | Polish | Colorectal cancer | HB | 350 | 350 | PCR-RFLP |
| Ture-Ozdemir, F. | 2008 | Greek | Gastric MALT lymphoma | HB | 56 | 51 | PCR-RFLP |
| Wex, T. | 2008 | German | Gastric cancer | PB | 159 | 150 | PCR-RFLP |
| Mockelmann, N. | 2009 | German | Colorectal cancer | PB | 1044 | 724 | SNPlex |
| Angeletti, S. | 2009 | Italian | Gastric cancer | PB | 170 | 156 | PCR-ARMS |
| Freire, P. | 2010 | Portuguese | Colorectal cancer | PB | 112 | 152 | Real-time PCR |
| Rigoli, L. | 2010 | Italian | Gastric cancer | PB | 60 | 87 | PCR-RFLP |
| Ashton, K. A. | 2010 | Austrilian | Endometrial cancer | PB | 213 | 291 | Real-time PCR |
| rs2066845 C/G (G908R) | |||||||
| Papaconstantinou, I. | 2005 | Greek | Colorectal cancer | N.A. | 104 | 100 | PCR-RFLP |
| Debniak, T. | 2005 | Polish | Melanoma | HB | 470 | 649 | Allele-specific PCR |
| Rosenstiel, P. | 2006 | German | Gastric MALT lymphoma | HB | 83 | 308 | Taqman |
| Roberts, R. L. | 2006 | New Zealander | Colorectal cancer | PB | 133 | 201 | ARMS |
| Tuupanen, S. | 2007 | Finnish | Colorectal cancer | PB | 960 | 508 | ARMS |
| Lakatos, P. L. | 2007 | Hungarian | Colorectal cancer | N.A. | 194 | 200 | dHPLC |
| Vogel, U. | 2007 | Danish | Colorectal cancer | PB | 355 | 753 | CE-SSCP |
| Ture-Ozdemir, F. | 2008 | Greek | Gastric MALT lymphoma | HB | 56 | 51 | PCR-RFLP |
| Szeliga, J. | 2008 | Polish | Rectal cancer | HB | 51 | 100 | PCR-RFLP |
| Suchy, J. | 2008 | Polish | Colorectal cancer | HB | 350 | 350 | PCR-RFLP |
| Mockelmann, N. | 2009 | German | Colorectal cancer | PB | 1044 | 724 | SNPlex |
| Freire, P. | 2010 | Portuguese | Colorectal cancer | PB | 112 | 152 | Real-time PCR |
| Rigoli, L. | 2010 | Italian | Gastric cancer | PB | 60 | 87 | PCR-RFLP |
| Ashton, K. A. | 2010 | Austrilian | Endometrial cancer | PB | 213 | 291 | Real-time PCR |
| rs2066847/rs5743293 (3020insC) | |||||||
| Nej, K. | 2004 | Polish | Pancreatic cancer | HB | 127 | 300 | Allele-specific PCR |
| Kurzawski, G. | 2004 | Polish | Colorectal cancer | HB | 556 | 300 | Allele-specific PCR |
| Alhopuro, P. | 2004 | Finnish | Colorectal cancer | PB | 926 | 348 | Allele-specific PCR |
| Huzarski, T. | 2005 | Polish | Breast cancer | HB | 462 | 1910 | Allele-specific PCR |
| Debniak, T. | 2005 | Polish | Melanoma | HB | 470 | 649 | Allele-specific PCR |
| Lubinski, J. | 2005 | Polish | Mixed | HB | 2850 | 1910 | Allele-specific PCR |
| Papaconstantinou, I. | 2005 | Greek | Colorectal cancer | N.A. | 104 | 100 | Allele-specific PCR |
| Rothman, N. | 2006 | Caucasian | Non-Hodgkin lymphoma | PB/HB | 3069 | 3497 | Mixed |
| Forrest, M. S. | 2006 | British, American | Non-Hodgkin lymphoma | PB | 899 | 1433 | Taqman |
| Roberts, R. L. | 2006 | New Zealander | Colorectal cancer | PB | 133 | 201 | ARMS |
| Jaworowska, E. | 2006 | Polish | Laryngeal cancer | HB | 347 | 4102 | Allele-specific PCR |
| Irmejs, A. | 2006 | Latvian | Mixed | PB | 420 | 974 | Allele-specific PCR |
| Lener, M. R. | 2006 | Polish | Mixed | HB | 4496 | 2068 | Allele-specific PCR |
| Lakatos, P. L. | 2007 | Hungarian | Colorectal cancer | N.A. | 194 | 200 | dHPLC |
| Vogel, U. | 2007 | Danish | Colorectal cancer | PB | 355 | 753 | CE-SSCP |
| Ennas, M. G. | 2008 | Italian | Lymphocytic leukaemia | PB | 39 | 109 | Taqman |
| Magnowski, P. | 2008 | Polish | Ovarian cancer | HB | 257 | 1910 | Allele-specific PCR |
| Szeliga, J. | 2008 | Polish | Rectal cancer | HB | 51 | 100 | ASA |
| Suchy, J. | 2008 | Polish | Colorectal cancer | HB | 607 | 607 | PCR-RFLP |
| Wex, T. | 2008 | German | Gastric cancer | PB | 47 | 48 | PCR-RFLP |
| Ture-Ozdemir, F. | 2008 | Greek | Gastric MALT lymphoma | HB | 56 | 51 | PCR-RFLP |
| Angeletti, S. | 2009 | Italian | Gastric cancer | PB | 170 | 156 | Multiplex PCR |
| Rigoli, L. | 2010 | Italian | Gastric cancer | PB | 60 | 87 | PCR-RFLP |
| Skibola, C. F. | 2010 | Mixed | Non-Hodgkin lymphoma | PB/HB | 6360 | 6636 | Mixed |
| Freire, P. | 2010 | Portuguese | Colorectal cancer | PB | 112 | 152 | Real-time PCR |
Abbreviations: PB: population-based; HB: hospital-based.
Meta-analysis results of the association between NOD2 polymorphisms and cancer risks.
| Data set number | OR(95% CI) | P value | Model | Phet | I2(%) | |
| rs2066842 C/T (P268S) | ||||||
| TT vs. CC | 3 | 2.48(0.85–7.25) | 0.097 | R | 0.041 | 68.8% |
| CT vs. CC | 3 | 1.32(0.54–3.25) | 0.543 | R | 0.002 | 83.9% |
| (TT+CT) vs. CC | 4 | 1.74(0.80–3.77) | 0.163 | R | <0.001 | 84.8% |
| T allele vs. C allele | 3 | 1.54(0.74–3.21) | 0.247 | R | <0.001 | 87.6% |
| rs2066844 C/T (R702W) | ||||||
| TT vs. CC | 7 |
|
| F | 0.970 | 0.0% |
| CT vs. CC | 13 |
|
| R | 0.033 | 46.5% |
| (TT+CT) vs. CC | 16 |
|
| R | 0.012 | 49.9% |
| T allele vs. C allele | 13 |
|
| R | 0.024 | 48.8% |
| rs2066845 C/G (G908R) | ||||||
| CG vs. GG | 11 |
|
| F | 0.186 | 27.1% |
| (CC+CG) vs. GG | 14 |
|
| F | 0.216 | 21.9% |
| C allele vs. G allele | 11 |
|
| F | 0.235 | 21.8% |
| rs2066847/rs5743293 (3020insC) | ||||||
| +/+ vs. −/− | 4 |
|
| F | 0.514 | 0.0% |
| +/− vs. −/− | 14 |
|
| R | 0.010 | 54.0% |
| (+/+ and +/−) vs. −/− | 25 |
|
| R | 0.092 | 28.6% |
| + vs. − | 13 |
|
| R | 0.014 | 52.4% |
R: random effect model; F: fixed effect model.
Figure 1Forest plot for the association between NOD2 rs2066842 polymorphism and cancer risk (TT+CT vs. CC).
Figure 2Forest plot for the association between NOD2 rs2066844 polymorphism and cancer risk (TT+CT vs. CC).
Figure 3Forest plot for the association between NOD2 rs2066845 polymorphism and cancer risk (CC+CG vs. GG).
Figure 4Forest plot for the association between NOD2 rs2066847 polymorphism and cancer risk ((+/+ and +/−) vs. −/−).
Publication bias.
| Compared genotype | Begg's test | Egger's test | |||
| z value | P value | t value | P value | ||
| rs2066842 C/T (P268S) | TT vs. CC | 0.52 | 0.602 | 1.35 | 0.405 |
| CT vs. CC | 0.52 | 0.602 | 0.87 | 0.546 | |
| (TT+CT) vs. CC | 1.36 | 0.174 | 1.70 | 0.231 | |
| T allele vs. C allele | 0.52 | 0.602 | 1.04 | 0.488 | |
| rs2066844 C/T (R702W) | TT vs. CC | -0.75 | 0.453 | 0.00 | 0.997 |
| CT vs. CC | 1.83 | 0.067 | 1.96 | 0.076 | |
| (TT+CT) vs. CC | 1.53 | 0.126 | 1.79 | 0.095 | |
| T allele vs. C allele | 1.95 | 0.051 | 2.00 | 0.071 | |
| rs2066845 C/G (G908R) | CG vs. GG | 0.39 | 0.697 | 0.45 | 0.666 |
| (CC+CG) vs. GG | 0.93 | 0.352 | 1.05 | 0.313 | |
| C allele vs. G allele | 0.08 | 0.938 | 0.26 | 0.800 | |
| rs2066847/rs5743293 (3020insC) | +/+ vs. −/− | 0.68 | 0.497 | 1.28 | 0.329 |
| +/− vs. −/− | 1.46 | 0.143 | 2.53 |
| |
| (+/+ and +/−) vs. −/− | 1.03 | 0.304 | 1.88 | 0.073 | |
| + vs. − | 1.10 | 0.272 | 2.42 |
| |