Literature DB >> 24584254

The iron stimulon and fur regulon of Geobacter sulfurreducens and their role in energy metabolism.

Mallory Embree1, Yu Qiu, Wendy Shieu, Harish Nagarajan, Regina O'Neil, Derek Lovley, Karsten Zengler.   

Abstract

Iron plays a critical role in the physiology of Geobacter species. It serves as both an essential component for proteins and cofactors and an electron acceptor during anaerobic respiration. Here, we investigated the iron stimulon and ferric uptake regulator (Fur) regulon of Geobacter sulfurreducens to examine the coordination between uptake of Fe(II) and the reduction of Fe(III) at the transcriptional level. Gene expression studies across a variety of different iron concentrations in both the wild type and a Δfur mutant strain were used to determine the iron stimulon. The stimulon consists of a broad range of gene products, ranging from iron-utilizing to central metabolism and iron reduction proteins. Integration of gene expression and chromatin immunoprecipitation (ChIP) data sets assisted in the identification of the Fur transcriptional regulatory network and Fur's role as a regulator of the iron stimulon. Additional physiological and transcriptional analyses of G. sulfurreducens grown with various Fe(II) concentrations revealed the depth of Fur's involvement in energy metabolism and the existence of redundancy within the iron-regulatory network represented by IdeR, an alternative iron transcriptional regulator. These characteristics enable G. sulfurreducens to thrive in environments with fluctuating iron concentrations by providing it with a robust mechanism to maintain tight and deliberate control over intracellular iron homeostasis.

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Year:  2014        PMID: 24584254      PMCID: PMC3993298          DOI: 10.1128/AEM.03916-13

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  50 in total

1.  Iron and fur regulation in Vibrio cholerae and the role of fur in virulence.

Authors:  Alexandra R Mey; Elizabeth E Wyckoff; Vanamala Kanukurthy; Carolyn R Fisher; Shelley M Payne
Journal:  Infect Immun       Date:  2005-12       Impact factor: 3.441

2.  Tunable metallic-like conductivity in microbial nanowire networks.

Authors:  Nikhil S Malvankar; Madeline Vargas; Kelly P Nevin; Ashley E Franks; Ching Leang; Byoung-Chan Kim; Kengo Inoue; Tünde Mester; Sean F Covalla; Jessica P Johnson; Vincent M Rotello; Mark T Tuominen; Derek R Lovley
Journal:  Nat Nanotechnol       Date:  2011-08-07       Impact factor: 39.213

3.  High-throughput illumina strand-specific RNA sequencing library preparation.

Authors:  Silin Zhong; Je-Gun Joung; Yi Zheng; Yun-ru Chen; Bao Liu; Ying Shao; Jenny Z Xiang; Zhangjun Fei; James J Giovannoni
Journal:  Cold Spring Harb Protoc       Date:  2011-08-01

Review 4.  Feo--transport of ferrous iron into bacteria.

Authors:  Michaël L Cartron; Sarah Maddocks; Paul Gillingham; C Jeremy Craven; Simon C Andrews
Journal:  Biometals       Date:  2006-04       Impact factor: 2.949

Review 5.  Iron and metal regulation in bacteria.

Authors:  K Hantke
Journal:  Curr Opin Microbiol       Date:  2001-04       Impact factor: 7.934

6.  Induction of the ferritin gene (ftnA) of Escherichia coli by Fe(2+)-Fur is mediated by reversal of H-NS silencing and is RyhB independent.

Authors:  Anjali Nandal; Cerys C O Huggins; Mark R Woodhall; Jonathan McHugh; Francisco Rodríguez-Quiñones; Michael A Quail; John R Guest; Simon C Andrews
Journal:  Mol Microbiol       Date:  2009-12-09       Impact factor: 3.501

Review 7.  Bacterial iron homeostasis.

Authors:  Simon C Andrews; Andrea K Robinson; Francisco Rodríguez-Quiñones
Journal:  FEMS Microbiol Rev       Date:  2003-06       Impact factor: 16.408

8.  Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough.

Authors:  Kelly S Bender; Huei-Che Bill Yen; Christopher L Hemme; Zamin Yang; Zhili He; Qiang He; Jizhong Zhou; Katherine H Huang; Eric J Alm; Terry C Hazen; Adam P Arkin; Judy D Wall
Journal:  Appl Environ Microbiol       Date:  2007-07-13       Impact factor: 4.792

9.  Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response.

Authors:  Yunfeng Yang; Daniel P Harris; Feng Luo; Liyou Wu; Andrea B Parsons; Anthony V Palumbo; Jizhong Zhou
Journal:  BMC Genomics       Date:  2008       Impact factor: 3.969

10.  Transcriptome analysis by strand-specific sequencing of complementary DNA.

Authors:  Dmitri Parkhomchuk; Tatiana Borodina; Vyacheslav Amstislavskiy; Maria Banaru; Linda Hallen; Sylvia Krobitsch; Hans Lehrach; Alexey Soldatov
Journal:  Nucleic Acids Res       Date:  2009-07-20       Impact factor: 16.971

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  11 in total

Review 1.  Bacterial iron detoxification at the molecular level.

Authors:  Justin M Bradley; Dimitri A Svistunenko; Michael T Wilson; Andrew M Hemmings; Geoffrey R Moore; Nick E Le Brun
Journal:  J Biol Chem       Date:  2020-10-12       Impact factor: 5.157

2.  IdeR, a DtxR Family Iron Response Regulator, Controls Iron Homeostasis, Morphological Differentiation, Secondary Metabolism, and the Oxidative Stress Response in Streptomyces avermitilis.

Authors:  Yaqing Cheng; Renjun Yang; Mengya Lyu; Shiwei Wang; Xingchao Liu; Ying Wen; Yuan Song; Jilun Li; Zhi Chen
Journal:  Appl Environ Microbiol       Date:  2018-10-30       Impact factor: 4.792

3.  Reduction Kinetic of Water Soluble Metal Salts by Geobacter sulfurreducens: Fe2+/Hemes Stabilize and Regulate Electron Flux Rates.

Authors:  Maksym Karamash; Michael Stumpe; Jörn Dengjel; Carlos A Salgueiro; Bernd Giese; Katharina M Fromm
Journal:  Front Microbiol       Date:  2022-06-17       Impact factor: 6.064

4.  Genetic switches and related tools for controlling gene expression and electrical outputs of Geobacter sulfurreducens.

Authors:  Toshiyuki Ueki; Kelly P Nevin; Trevor L Woodard; Derek R Lovley
Journal:  J Ind Microbiol Biotechnol       Date:  2016-09-22       Impact factor: 3.346

5.  The Role of Fur in the Transcriptional and Iron Homeostatic Response of Enterococcus faecalis.

Authors:  Mauricio Latorre; Daniela Quenti; Dante Travisany; Kavindra V Singh; Barbara E Murray; Alejandro Maass; Verónica Cambiazo
Journal:  Front Microbiol       Date:  2018-07-17       Impact factor: 5.640

6.  Cobalt Resistance via Detoxification and Mineralization in the Iron-Reducing Bacterium Geobacter sulfurreducens.

Authors:  Hunter Dulay; Marcela Tabares; Kazem Kashefi; Gemma Reguera
Journal:  Front Microbiol       Date:  2020-11-26       Impact factor: 5.640

Review 7.  Bacterial iron detoxification at the molecular level.

Authors:  Justin M Bradley; Dimitry A Svistunenko; Michael T Wilson; Andrew M Hemmings; Geoffrey R Moore; Nick E Le Brun
Journal:  J Biol Chem       Date:  2020-12-18       Impact factor: 5.157

8.  Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli.

Authors:  Sang Woo Seo; Donghyuk Kim; Haythem Latif; Edward J O'Brien; Richard Szubin; Bernhard O Palsson
Journal:  Nat Commun       Date:  2014-09-15       Impact factor: 14.919

9.  K-shell Analysis Reveals Distinct Functional Parts in an Electron Transfer Network and Its Implications for Extracellular Electron Transfer.

Authors:  Dewu Ding; Ling Li; Chuanjun Shu; Xiao Sun
Journal:  Front Microbiol       Date:  2016-04-20       Impact factor: 5.640

10.  Extracellular Electron Transfer Powers Enterococcus faecalis Biofilm Metabolism.

Authors:  Damien Keogh; Ling Ning Lam; Lucinda E Doyle; Artur Matysik; Shruti Pavagadhi; Shivshankar Umashankar; Pui Man Low; Jennifer L Dale; Yiyang Song; Sean Pin Ng; Chris B Boothroyd; Gary M Dunny; Sanjay Swarup; Rohan B H Williams; Enrico Marsili; Kimberly A Kline
Journal:  mBio       Date:  2018-04-10       Impact factor: 7.867

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