Literature DB >> 27659960

Genetic switches and related tools for controlling gene expression and electrical outputs of Geobacter sulfurreducens.

Toshiyuki Ueki1, Kelly P Nevin2, Trevor L Woodard2, Derek R Lovley2.   

Abstract

Physiological studies and biotechnology applications of Geobacter species have been limited by a lack of genetic tools. Therefore, potential additional molecular strategies for controlling metabolism were explored. When the gene for citrate synthase, or acetyl-CoA transferase, was placed under the control of a LacI/IPTG regulator/inducer system, cells grew on acetate only in the presence of IPTG. The TetR/AT system could also be used to control citrate synthase gene expression and acetate metabolism. A strain that required IPTG for growth on D-lactate was constructed by placing the gene for D-lactate dehydrogenase under the control of the LacI/IPTG system. D-Lactate served as an inducer in a strain in which a D-lactate responsive promoter and transcription repressor were used to control citrate synthase expression. Iron- and potassium-responsive systems were successfully incorporated to regulate citrate synthase expression and growth on acetate. Linking the appropriate degradation tags on the citrate synthase protein made it possible to control acetate metabolism with either the endogenous ClpXP or exogenous Lon protease and tag system. The ability to control current output from Geobacter biofilms and the construction of an AND logic gate for acetate metabolism suggested that the tools developed may be applicable for biosensor and biocomputing applications.

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Year:  2016        PMID: 27659960     DOI: 10.1007/s10295-016-1836-5

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  66 in total

1.  MacA, a diheme c-type cytochrome involved in Fe(III) reduction by Geobacter sulfurreducens.

Authors:  Jessica E Butler; Franz Kaufmann; Maddalena V Coppi; Cinthia Núñez; Derek R Lovley
Journal:  J Bacteriol       Date:  2004-06       Impact factor: 3.490

2.  Engineering controllable protein degradation.

Authors:  Kathleen E McGinness; Tania A Baker; Robert T Sauer
Journal:  Mol Cell       Date:  2006-06-09       Impact factor: 17.970

Review 3.  Functional specialization within the Fur family of metalloregulators.

Authors:  Jin-Won Lee; John D Helmann
Journal:  Biometals       Date:  2007-01-10       Impact factor: 2.949

4.  Power output and columbic efficiencies from biofilms of Geobacter sulfurreducens comparable to mixed community microbial fuel cells.

Authors:  K P Nevin; H Richter; S F Covalla; J P Johnson; T L Woodard; A L Orloff; H Jia; M Zhang; D R Lovley
Journal:  Environ Microbiol       Date:  2008-06-28       Impact factor: 5.491

5.  Characterization of citrate synthase from Geobacter sulfurreducens and evidence for a family of citrate synthases similar to those of eukaryotes throughout the Geobacteraceae.

Authors:  Daniel R Bond; Tünde Mester; Camilla L Nesbø; Andrea V Izquierdo-Lopez; Frank L Collart; Derek R Lovley
Journal:  Appl Environ Microbiol       Date:  2005-07       Impact factor: 4.792

6.  Functional environmental proteomics: elucidating the role of a c-type cytochrome abundant during uranium bioremediation.

Authors:  Jiae Yun; Nikhil S Malvankar; Toshiyuki Ueki; Derek R Lovley
Journal:  ISME J       Date:  2015-07-03       Impact factor: 10.302

7.  Studies on transformation of Escherichia coli with plasmids.

Authors:  D Hanahan
Journal:  J Mol Biol       Date:  1983-06-05       Impact factor: 5.469

8.  A genetic system for Geobacter metallireducens: role of the flagellin and pilin in the reduction of Fe(III) oxide.

Authors:  Pier-Luc Tremblay; Muktak Aklujkar; Ching Leang; Kelly P Nevin; Derek Lovley
Journal:  Environ Microbiol Rep       Date:  2011-11-27       Impact factor: 3.541

9.  Geobacter sulfurreducens strain engineered for increased rates of respiration.

Authors:  Mounir Izallalen; Radhakrishnan Mahadevan; Anthony Burgard; Bradley Postier; Raymond Didonato; Jun Sun; Christopher H Schilling; Derek R Lovley
Journal:  Metab Eng       Date:  2008-06-27       Impact factor: 9.783

10.  Aromatic amino acids required for pili conductivity and long-range extracellular electron transport in Geobacter sulfurreducens.

Authors:  Madeline Vargas; Nikhil S Malvankar; Pier-Luc Tremblay; Ching Leang; Jessica A Smith; Pranav Patel; Oona Snoeyenbos-West; Oona Synoeyenbos-West; Kelly P Nevin; Derek R Lovley
Journal:  MBio       Date:  2013-03-12       Impact factor: 7.867

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  6 in total

1.  Engineering Biological Electron Transfer and Redox Pathways for Nanoparticle Synthesis.

Authors:  James Q Boedicker; Manasi Gangan; Kyle Naughton; Fengjie Zhao; Jeffrey A Gralnick; Mohamed Y El-Naggar
Journal:  Bioelectricity       Date:  2021-06-16

2.  Key Enzymes for Anaerobic Lactate Metabolism in Geobacter sulfurreducens.

Authors:  Toshiyuki Ueki
Journal:  Appl Environ Microbiol       Date:  2021-01-04       Impact factor: 4.792

3.  e-Biologics: Fabrication of Sustainable Electronics with "Green" Biological Materials.

Authors:  Derek R Lovley
Journal:  MBio       Date:  2017-06-27       Impact factor: 7.867

4.  Construction of a Geobacter Strain With Exceptional Growth on Cathodes.

Authors:  Toshiyuki Ueki; Kelly P Nevin; Trevor L Woodard; Muktak A Aklujkar; Dawn E Holmes; Derek R Lovley
Journal:  Front Microbiol       Date:  2018-07-13       Impact factor: 5.640

5.  Contextual dependencies expand the re-usability of genetic inverters.

Authors:  Huseyin Tas; Lewis Grozinger; Ruud Stoof; Victor de Lorenzo; Ángel Goñi-Moreno
Journal:  Nat Commun       Date:  2021-01-13       Impact factor: 14.919

Review 6.  Status quo of tet regulation in bacteria.

Authors:  Ralph Bertram; Bernd Neumann; Christopher F Schuster
Journal:  Microb Biotechnol       Date:  2021-10-29       Impact factor: 5.813

  6 in total

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