| Literature DB >> 24569475 |
G H Bain1, E Collie-Duguid2, G I Murray3, F J Gilbert4, A Denison5, F McKiddie6, T Ahearn6, I Fleming2, J Leeds7, P Phull7, K Park8, S Nanthakumaran8, K M Matula, H I Grabsch9, P Tan10, A Welch2, L Schweiger2, A Dahle-Smith11, G Urquhart2, M Finegan2, R D Petty11.
Abstract
BACKGROUND: Cytotoxic chemotherapy remains the main systemic therapy for gastro-oesophageal adenocarcinoma, but resistance to chemotherapy is common, resulting in ineffective and often toxic treatment for patients. Predictive biomarkers for chemotherapy response would increase the probability of successful therapy, but none are currently recommended for clinical use. We used global gene expression profiling of tumour biopsies to identify novel predictive biomarkers for cytotoxic chemotherapy.Entities:
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Year: 2014 PMID: 24569475 PMCID: PMC3960617 DOI: 10.1038/bjc.2014.45
Source DB: PubMed Journal: Br J Cancer ISSN: 0007-0920 Impact factor: 7.640
Details of the 14 patients in the Gene Expression profiling discovery cohort
| 65 | F | Distal oesophagus | IB | NR (stable disease) | 33.6 | ECX |
| 60 | F | GOJ type I | IB | NR (stable disease) | 29.5 | ECX |
| 55 | M | GOJ type I | IIIA | R (partial response) | 27.8 | ECX |
| 63 | M | GOJ type III | IIIA | NR (stable disease) | 26.4 | ECX |
| 69 | M | GOJ type II | IIIB | R (partial response) | 27.3 | ECX |
| 71 | M | GOJ type II | IIIA | R (partial response) | 22 | ECX |
| 50 | M | GOJ type III | IV | R (partial response) | 25.8 | EOX |
| 63 | M | Distal oesophagus | IV | R(partial response) | 34.3 | EOX |
| 53 | M | Distal oesophagus | IIIA | NR (stable disease) | 36.1 | ECX |
| 64 | M | GOJ type III | IIIA | R (partial response) | 33.6 | ECX |
| 56 | M | GOJ type II | IIIA | R (partial response) | 28.4 | ECX |
| 63 | M | Distal oesophagus | IV | R (partial response) | 28.5 | EOX |
| 46 | M | GOJ type I | IV | R (partial response) | 30.2 | EOX |
| 61 | M | Distal oesophagus | IIIA | R (partial response) | 27.4 | ECX |
Abbreviations: BMI=body mass index; ECX=epirubicin, cisplatin and capeciatbine; EOX=epirubicin, oxaliplatin and capecitabine; F=female; GOJ=gastro-oesophageal junction; M=male; NR=nonresponder; R=responder.
There was no significant relationship between stage (P=0.899), BMI (P=0.293) or regimen and response (P=0.899).
Details of 154 patients in the independent set tissue microarray
| Range | 25–88 |
| Mean | 64 |
| Male | 109 |
| Female | 45 |
| Oesophagus (and Siewert type I and II) | 69 |
| Gastric (and Siewert type III) | 85 |
| I | 34 |
| II | 55 |
| III | 56 |
| IV | 9 |
Stage IV patients were all M1a (coealiac axis lymph node metastases only) and believed to be resectable (R0) following multidisciplinary review.
Pathway analysis using DAVID and the 520 gene set (P<0.02, FC>1.1) identified 6 significant pathways
| Adipocytokine signalling pathway | 5 | 0.08 |
| Pyruvate metabolism | 4 | 0.07 |
| Butanoate metabolism | 4 | 0.05 |
| Neuroactive ligand-receptor activation | 12 | 0.05 |
| Olfactory transduction | 16 | 0.04 |
| Valine, leucine and isoleucine metabolism | 5 | 0.02 |
Expression Analysis Systematic Explorer (EASE) score, a modified Fisher's exact P-value.
Figure 1Mean leptin mRNA from Affymetrix Exon 1.0 ST Array in discovery set ( Error bars±s.e.m. There is no significant correlation between tumour leptin mRNA expression and the tumour cell content of biopsies (P=0.779).
Details of genes from the adipocytokine signalling pathway identified in pathway analysis
| 3022709 | 7q32.1 | Up | 0.011 | ||
| 2599580 | 2q35 | Up | 0.016 | ||
| 3430959 | 12q24.11 | Down | 0.011 | ||
| 2544625 | 2p23.3 | Up | 0.005 | ||
| 3275922 | 10p15.1 | Up | 0.016 |
Figure 2Leptin IHC in gastro-oesophageal adenocarcinomas. (A) Representative IHC (weak and medium × 200; strong × 400). (B) Leptin IHC and histopathological response to neoadjuvant platinum-based combination chemotherapy (χ2, P=0.007). Mandard TRG 4–5 have a medium survival of 23.8 months and Mandard TRG 1–3 median survival not reached but >72 months (Kaplan–Meier analysis, log rank P=0.009, data not shown) in this series and survival of Mandard TRG 4–5 is not different to those who had surgery only and no neoadjuvant chemotherapy in this cohort (median survival=34.4 months, Kaplan–Meier log rank P=0.757, data not shown). (C) Leptin IHC and overall survival (Kaplan–Meier analysis, log rank P=0.021). (D) Leptin IHC and survival stratified by neoadjuvant chemotherapy (P for interaction=0.038). Leptin positive=leptin IHC strong; leptin negative=leptin IHC negative, weak or moderate.
Multivariate analysis using Cox proportional hazards model in the independent tissue microarray series (n=154)
| Positive (R1) | 1.23 (1.05–1.44) | 0.012 |
| Strong | 0.85 (0.73–0.99) | 0.040 |
| III/IV | 1.78 (1.37–2.28) | 0.001 |
| Yes | 0.64 (0.38–1.03) | 0.062 |
| Gastric | 0.70 (0.43–1.16) | 0.165 |
Abbreviations: CI=confidence interval; HR=hazard ratio.
Figure 3Leptin IHC and Figures show mean IC50 (drug concentration for 50% growth inhibition) performed in triplicate and a minimum of three replicates, P-values, Student's t-test and error bars±s.e.m. Representative examples of (C) weak, (D) moderate and (F) strong leptin IHC staining in cell lines. Magnification × 100 in all cases. Effects of leptin receptor antagonist on cisplatin sensitivity of (G) a highly cisplatin-resistant gastric adenocarcinoma cell line AGS Cis5, IC50=16 μM, cisplatin=8 μM, SHLA=0.32 ng ml−1, and (H) oesophageal adenocarcinoma cell line OE33, IC50=1.5 μM, cisplatin=0.5 μM, SHLA=0.64 ng ml−1. (G and H) Mean growth from four independent experiments repeated in triplicate, relative cell survival (%)=(MTT OD value for cells only/MTT OD value for cells+treatment as indicated) × 100, with P-values for ANOVA with Tukey's post hoc test shown where significant (P<0.05), and error bars±s.e.m.