Literature DB >> 24556078

Discovering brain regions relevant to obsessive-compulsive disorder identification through bagging and transduction.

Emilio Parrado-Hernández1, Vanessa Gómez-Verdejo1, Manel Martínez-Ramón2, John Shawe-Taylor3, Pino Alonso4, Jesús Pujol5, José M Menchón4, Narcis Cardoner4, Carles Soriano-Mas6.   

Abstract

In the present study we applied a multivariate feature selection method based on the analysis of the sign consistency of voxel weights across bagged linear Support Vector Machines (SVMs) with the aim of detecting brain regions relevant for the discrimination of subjects with obsessive-compulsive disorder (OCD, n=86) from healthy controls (n=86). Each participant underwent a structural magnetic resonance imaging (sMRI) examination that was pre-processed in Statistical Parametric Mapping (SPM8) using the standard pipeline of voxel-based morphometry (VBM) studies. Subsequently, we applied our multivariate feature selection algorithm, which also included an L2 norm regularization to account for the clustering nature of MRI data, and a transduction-based refinement to further control overfitting. Our approach proved to be superior to two state-of-the-art feature selection methods (i.e., mass-univariate t-Test selection and recursive feature elimination), since, following the application of transductive refinement, we obtained a lower test error rate of the final classifier. Importantly, the regions identified by our method have been previously reported to be altered in OCD patients in studies using traditional brain morphometry methods. By contrast, the discrimination patterns obtained with the t-Test and the recursive feature elimination approaches extended across fewer brain regions and included fewer voxels per cluster. These findings suggest that the feature selection method presented here provides a more comprehensive characterization of the disorder, thus yielding not only a superior identification of OCD patients on the basis of their brain anatomy, but also a discrimination map that incorporates most of the alterations previously described to be associated with the disorder.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  MRI; Machine learning; Obsessive–compulsive disorder; Transduction; Voxel selection

Mesh:

Year:  2014        PMID: 24556078     DOI: 10.1016/j.media.2014.01.006

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  6 in total

1.  Brain structural correlates of sensory phenomena in patients with obsessive-compulsive disorder.

Authors:  Marta Subirà; João R Sato; Pino Alonso; Maria C do Rosário; Cinto Segalàs; Marcelo C Batistuzzo; Eva Real; Antonio C Lopes; Ester Cerrillo; Juliana B Diniz; Jesús Pujol; Rachel O Assis; José M Menchón; Roseli G Shavitt; Geraldo F Busatto; Narcís Cardoner; Euripedes C Miguel; Marcelo Q Hoexter; Carles Soriano-Mas
Journal:  J Psychiatry Neurosci       Date:  2015-07       Impact factor: 6.186

2.  Identification of patterns of gray matter abnormalities in schizophrenia using source-based morphometry and bagging.

Authors:  Eduardo Castro; Cota Navin Gupta; Manel Martínez-Ramón; Vince D Calhoun; Mohammad R Arbabshirani; Jessica Turner
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2014

3.  Support Vector Machine Classification of Obsessive-Compulsive Disorder Based on Whole-Brain Volumetry and Diffusion Tensor Imaging.

Authors:  Cong Zhou; Yuqi Cheng; Liangliang Ping; Jian Xu; Zonglin Shen; Linling Jiang; Li Shi; Shuran Yang; Yi Lu; Xiufeng Xu
Journal:  Front Psychiatry       Date:  2018-10-23       Impact factor: 4.157

4.  Multivariate classification of drug-naive obsessive-compulsive disorder patients and healthy controls by applying an SVM to resting-state functional MRI data.

Authors:  Xi Yang; Xinyu Hu; Wanjie Tang; Bin Li; Yanchun Yang; Qiyong Gong; Xiaoqi Huang
Journal:  BMC Psychiatry       Date:  2019-07-05       Impact factor: 3.630

5.  Sign-Consistency Based Variable Importance for Machine Learning in Brain Imaging.

Authors:  Vanessa Gómez-Verdejo; Emilio Parrado-Hernández; Jussi Tohka
Journal:  Neuroinformatics       Date:  2019-10

6.  Towards a brain-based predictome of mental illness.

Authors:  Barnaly Rashid; Vince Calhoun
Journal:  Hum Brain Mapp       Date:  2020-05-06       Impact factor: 5.038

  6 in total

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