Literature DB >> 24535286

Genomics and the origin of species.

Ole Seehausen1, Roger K Butlin2, Irene Keller3, Catherine E Wagner4, Janette W Boughman5, Paul A Hohenlohe6, Catherine L Peichel7, Glenn-Peter Saetre8, Claudia Bank9, Ake Brännström10, Alan Brelsford11, Chris S Clarkson12, Fabrice Eroukhmanoff8, Jeffrey L Feder13, Martin C Fischer14, Andrew D Foote15, Paolo Franchini16, Chris D Jiggins17, Felicity C Jones18, Anna K Lindholm19, Kay Lucek4, Martine E Maan20, David A Marques21, Simon H Martin17, Blake Matthews22, Joana I Meier21, Markus Möst23, Michael W Nachman24, Etsuko Nonaka25, Diana J Rennison26, Julia Schwarzer27, Eric T Watson28, Anja M Westram29, Alex Widmer14.   

Abstract

Speciation is a fundamental evolutionary process, the knowledge of which is crucial for understanding the origins of biodiversity. Genomic approaches are an increasingly important aspect of this research field. We review current understanding of genome-wide effects of accumulating reproductive isolation and of genomic properties that influence the process of speciation. Building on this work, we identify emergent trends and gaps in our understanding, propose new approaches to more fully integrate genomics into speciation research, translate speciation theory into hypotheses that are testable using genomic tools and provide an integrative definition of the field of speciation genomics.

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Year:  2014        PMID: 24535286     DOI: 10.1038/nrg3644

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  174 in total

1.  Sexual selection and speciation.

Authors:  T M. Panhuis; R Butlin; M Zuk; T Tregenza
Journal:  Trends Ecol Evol       Date:  2001-07-01       Impact factor: 17.712

2.  Magic traits: distinguishing the important from the trivial.

Authors:  Benjamin C Haller; Luis F De Léon; Gregor Rolshausen; Kiyoko M Gotanda; Andrew P Hendry
Journal:  Trends Ecol Evol       Date:  2011-10-11       Impact factor: 17.712

3.  Inheritance of female mating preference in a sympatric sibling species pair of Lake Victoria cichlids: implications for speciation.

Authors:  Marcel P Haesler; Ole Seehausen
Journal:  Proc Biol Sci       Date:  2005-02-07       Impact factor: 5.349

4.  Effects of migration on the genetic covariance matrix.

Authors:  Frédéric Guillaume; Michael C Whitlock
Journal:  Evolution       Date:  2007-08-17       Impact factor: 3.694

Review 5.  The centromere-drive hypothesis: a simple basis for centromere complexity.

Authors:  Harmit S Malik
Journal:  Prog Mol Subcell Biol       Date:  2009

6.  Bayesian estimation of genomic clines.

Authors:  Zachariah Gompert; C Alex Buerkle
Journal:  Mol Ecol       Date:  2011-03-31       Impact factor: 6.185

Review 7.  Ecology, sexual selection and speciation.

Authors:  Martine E Maan; Ole Seehausen
Journal:  Ecol Lett       Date:  2011-03-06       Impact factor: 9.492

8.  Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana.

Authors:  David Bikard; Dhaval Patel; Claire Le Metté; Veronica Giorgi; Christine Camilleri; Malcolm J Bennett; Olivier Loudet
Journal:  Science       Date:  2009-01-30       Impact factor: 47.728

9.  Genome-wide architecture of reproductive isolation in a naturally occurring hybrid zone between Mus musculus musculus and M. m. domesticus.

Authors:  Václav Janoušek; Liuyang Wang; Ken Luzynski; Petra Dufková; Martina M Vyskočilová; Michael W Nachman; Pavel Munclinger; Miloš Macholán; Jaroslav Piálek; Priscilla K Tucker
Journal:  Mol Ecol       Date:  2012-05-14       Impact factor: 6.185

10.  The limits to parapatric speciation: Dobzhansky-Muller incompatibilities in a continent-island model.

Authors:  Claudia Bank; Reinhard Bürger; Joachim Hermisson
Journal:  Genetics       Date:  2012-04-27       Impact factor: 4.402

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  234 in total

1.  Genomic islands of differentiation in two songbird species reveal candidate genes for hybrid female sterility.

Authors:  Libor Mořkovský; Václav Janoušek; Jiří Reif; Jakub Rídl; Jan Pačes; Lukáš Choleva; Karel Janko; Michael W Nachman; Radka Reifová
Journal:  Mol Ecol       Date:  2018-02-26       Impact factor: 6.185

Review 2.  Evolutionary biology through the lens of budding yeast comparative genomics.

Authors:  Souhir Marsit; Jean-Baptiste Leducq; Éléonore Durand; Axelle Marchant; Marie Filteau; Christian R Landry
Journal:  Nat Rev Genet       Date:  2017-07-17       Impact factor: 53.242

3.  A genomic perspective on the generation and maintenance of genetic diversity in herbivorous insects.

Authors:  Andrew D Gloss; Simon C Groen; Noah K Whiteman
Journal:  Annu Rev Ecol Evol Syst       Date:  2016-08-19       Impact factor: 13.915

4.  Transcriptome resources for the white-footed mouse (Peromyscus leucopus): new genomic tools for investigating ecologically divergent urban and rural populations.

Authors:  Stephen E Harris; Rachel J O'Neill; Jason Munshi-South
Journal:  Mol Ecol Resour       Date:  2014-07-16       Impact factor: 7.090

5.  Trajectory and genomic determinants of fungal-pathogen speciation and host adaptation.

Authors:  Xiao Hu; Guohua Xiao; Peng Zheng; Yanfang Shang; Yao Su; Xinyu Zhang; Xingzhong Liu; Shuai Zhan; Raymond J St Leger; Chengshu Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-03       Impact factor: 11.205

6.  Dispersal and local persistence shape the genetic structure of a widespread Neotropical plant species with a patchy distribution.

Authors:  Bárbara Simões Santos Leal; Vanessa Araujo Graciano; Cleber Juliano Neves Chaves; Luis Alberto Pillaca Huacre; Myriam Heuertz; Clarisse Palma-Silva
Journal:  Ann Bot       Date:  2019-10-18       Impact factor: 4.357

7.  The role of phenotypic plasticity on population differentiation.

Authors:  M Schmid; F Guillaume
Journal:  Heredity (Edinb)       Date:  2017-07-26       Impact factor: 3.821

8.  Chromosomal inversions and ecotypic differentiation in Anopheles gambiae: the perspective from whole-genome sequencing.

Authors:  R Rebecca Love; Aaron M Steele; Mamadou B Coulibaly; Sékou F Traore; Scott J Emrich; Michael C Fontaine; Nora J Besansky
Journal:  Mol Ecol       Date:  2016-11-09       Impact factor: 6.185

Review 9.  Resistance and tolerance to foreign elements by prokaryotic immune systems - curating the genome.

Authors:  Gregory W Goldberg; Luciano A Marraffini
Journal:  Nat Rev Immunol       Date:  2015-11       Impact factor: 53.106

10.  Preadult life history variation determines adult transcriptome expression.

Authors:  William J Etges; Cássia de Oliveira; Subhash Rajpurohit; Allen G Gibbs
Journal:  Mol Ecol       Date:  2016-02       Impact factor: 6.185

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