Literature DB >> 24534443

Secondary use of clinical data: the Vanderbilt approach.

Ioana Danciu1, James D Cowan2, Melissa Basford2, Xiaoming Wang2, Alexander Saip2, Susan Osgood2, Jana Shirey-Rice2, Jacqueline Kirby2, Paul A Harris3.   

Abstract

The last decade has seen an exponential growth in the quantity of clinical data collected nationwide, triggering an increase in opportunities to reuse the data for biomedical research. The Vanderbilt research data warehouse framework consists of identified and de-identified clinical data repositories, fee-for-service custom services, and tools built atop the data layer to assist researchers across the enterprise. Providing resources dedicated to research initiatives benefits not only the research community, but also clinicians, patients and institutional leadership. This work provides a summary of our approach in the secondary use of clinical data for research domain, including a description of key components and a list of lessons learned, designed to assist others assembling similar services and infrastructure.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Biomedical informatics; Research data warehouse; Research enterprise; Secondary use of clinical data

Mesh:

Year:  2014        PMID: 24534443      PMCID: PMC4133331          DOI: 10.1016/j.jbi.2014.02.003

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  114 in total

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2.  "Human non-subjects research": privacy and compliance.

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Journal:  Pain       Date:  2013-08-28       Impact factor: 6.961

4.  Research electronic data capture (REDCap)--a metadata-driven methodology and workflow process for providing translational research informatics support.

Authors:  Paul A Harris; Robert Taylor; Robert Thielke; Jonathon Payne; Nathaniel Gonzalez; Jose G Conde
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5.  A study of transportability of an existing smoking status detection module across institutions.

Authors:  Mei Liu; Anushi Shah; Min Jiang; Neeraja B Peterson; Qi Dai; Melinda C Aldrich; Qingxia Chen; Erica A Bowton; Hongfang Liu; Joshua C Denny; Hua Xu
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6.  Identifying unpredicted drug benefit through query of patient experiential knowledge: a proof of concept web-based system.

Authors:  Jill Pulley; Nik Nik Hassan; Gordon R Bernard; Jim N Jirjis; Jonathan Schildcrout; David Robertson; Daniel R Masys; Paul Harris
Journal:  Clin Transl Sci       Date:  2010-06       Impact factor: 4.689

Review 7.  High-density lipoprotein (HDL) cholesterol: leveraging practice-based biobank cohorts to characterize clinical and genetic predictors of treatment outcome.

Authors:  R A Wilke
Journal:  Pharmacogenomics J       Date:  2010-12-14       Impact factor: 3.550

8.  Technical and policy approaches to balancing patient privacy and data sharing in clinical and translational research.

Authors:  Bradley Malin; David Karp; Richard H Scheuermann
Journal:  J Investig Med       Date:  2010-01       Impact factor: 2.895

9.  Supporting communication in an integrated patient record system.

Authors:  Dario A Giuse
Journal:  AMIA Annu Symp Proc       Date:  2003

10.  A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.

Authors:  Keri L Monda; Gary K Chen; Kira C Taylor; Cameron Palmer; Todd L Edwards; Leslie A Lange; Maggie C Y Ng; Adebowale A Adeyemo; Matthew A Allison; Lawrence F Bielak; Guanjie Chen; Mariaelisa Graff; Marguerite R Irvin; Suhn K Rhie; Guo Li; Yongmei Liu; Youfang Liu; Yingchang Lu; Michael A Nalls; Yan V Sun; Mary K Wojczynski; Lisa R Yanek; Melinda C Aldrich; Adeyinka Ademola; Christopher I Amos; Elisa V Bandera; Cathryn H Bock; Angela Britton; Ulrich Broeckel; Quiyin Cai; Neil E Caporaso; Chris S Carlson; John Carpten; Graham Casey; Wei-Min Chen; Fang Chen; Yii-Der I Chen; Charleston W K Chiang; Gerhard A Coetzee; Ellen Demerath; Sandra L Deming-Halverson; Ryan W Driver; Patricia Dubbert; Mary F Feitosa; Ye Feng; Barry I Freedman; Elizabeth M Gillanders; Omri Gottesman; Xiuqing Guo; Talin Haritunians; Tamara Harris; Curtis C Harris; Anselm J M Hennis; Dena G Hernandez; Lorna H McNeill; Timothy D Howard; Barbara V Howard; Virginia J Howard; Karen C Johnson; Sun J Kang; Brendan J Keating; Suzanne Kolb; Lewis H Kuller; Abdullah Kutlar; Carl D Langefeld; Guillaume Lettre; Kurt Lohman; Vaneet Lotay; Helen Lyon; Joann E Manson; William Maixner; Yan A Meng; Kristine R Monroe; Imran Morhason-Bello; Adam B Murphy; Josyf C Mychaleckyj; Rajiv Nadukuru; Katherine L Nathanson; Uma Nayak; Amidou N'diaye; Barbara Nemesure; Suh-Yuh Wu; M Cristina Leske; Christine Neslund-Dudas; Marian Neuhouser; Sarah Nyante; Heather Ochs-Balcom; Adesola Ogunniyi; Temidayo O Ogundiran; Oladosu Ojengbede; Olufunmilayo I Olopade; Julie R Palmer; Edward A Ruiz-Narvaez; Nicholette D Palmer; Michael F Press; Evandine Rampersaud; Laura J Rasmussen-Torvik; Jorge L Rodriguez-Gil; Babatunde Salako; Eric E Schadt; Ann G Schwartz; Daniel A Shriner; David Siscovick; Shad B Smith; Sylvia Wassertheil-Smoller; Elizabeth K Speliotes; Margaret R Spitz; Lara Sucheston; Herman Taylor; Bamidele O Tayo; Margaret A Tucker; David J Van Den Berg; Digna R Velez Edwards; Zhaoming Wang; John K Wiencke; Thomas W Winkler; John S Witte; Margaret Wrensch; Xifeng Wu; James J Yang; Albert M Levin; Taylor R Young; Neil A Zakai; Mary Cushman; Krista A Zanetti; Jing Hua Zhao; Wei Zhao; Yonglan Zheng; Jie Zhou; Regina G Ziegler; Joseph M Zmuda; Jyotika K Fernandes; Gary S Gilkeson; Diane L Kamen; Kelly J Hunt; Ida J Spruill; Christine B Ambrosone; Stefan Ambs; Donna K Arnett; Larry Atwood; Diane M Becker; Sonja I Berndt; Leslie Bernstein; William J Blot; Ingrid B Borecki; Erwin P Bottinger; Donald W Bowden; Gregory Burke; Stephen J Chanock; Richard S Cooper; Jingzhong Ding; David Duggan; Michele K Evans; Caroline Fox; W Timothy Garvey; Jonathan P Bradfield; Hakon Hakonarson; Struan F A Grant; Ann Hsing; Lisa Chu; Jennifer J Hu; Dezheng Huo; Sue A Ingles; Esther M John; Joanne M Jordan; Edmond K Kabagambe; Sharon L R Kardia; Rick A Kittles; Phyllis J Goodman; Eric A Klein; Laurence N Kolonel; Loic Le Marchand; Simin Liu; Barbara McKnight; Robert C Millikan; Thomas H Mosley; Badri Padhukasahasram; L Keoki Williams; Sanjay R Patel; Ulrike Peters; Curtis A Pettaway; Patricia A Peyser; Bruce M Psaty; Susan Redline; Charles N Rotimi; Benjamin A Rybicki; Michèle M Sale; Pamela J Schreiner; Lisa B Signorello; Andrew B Singleton; Janet L Stanford; Sara S Strom; Michael J Thun; Mara Vitolins; Wei Zheng; Jason H Moore; Scott M Williams; Shamika Ketkar; Xiaofeng Zhu; Alan B Zonderman; Charles Kooperberg; George J Papanicolaou; Brian E Henderson; Alex P Reiner; Joel N Hirschhorn; Ruth J F Loos; Kari E North; Christopher A Haiman
Journal:  Nat Genet       Date:  2013-04-14       Impact factor: 38.330

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  91 in total

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Journal:  J Am Med Inform Assoc       Date:  2015-07-29       Impact factor: 4.497

2.  Secondary Use of Clinical Data to Enable Data-Driven Translational Science with Trustworthy Access Management.

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3.  Influence of Antipsychotics on Functional Prognosis after Geriatric Hip Fracture.

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4.  Secondary Use of Patients' Electronic Records (SUPER): An Approach for Meeting Specific Data Needs of Clinical and Translational Researchers.

Authors:  Evan T Sholle; Joseph Kabariti; Stephen B Johnson; John P Leonard; Jyotishman Pathak; Vinay I Varughese; Curtis L Cole; Thomas R Campion
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Review 5.  Precision medicine in cardiology.

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6.  Tackling the "so what" problem in scientific research: a systems-based approach to resource and publication tracking.

Authors:  Paul A Harris; Jacqueline Kirby; Jonathan A Swafford; Terri L Edwards; Minhua Zhang; Tonya R Yarbrough; Lynda D Lane; Tara Helmer; Gordon R Bernard; Jill M Pulley
Journal:  Acad Med       Date:  2015-08       Impact factor: 6.893

7.  Seeing the forest through the trees: uncovering phenomic complexity through interactive network visualization.

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8.  Design and Implementation of a Secure Computing Environment for Analysis of Sensitive Data at an Academic Medical Center.

Authors:  Peter R Oxley; John Ruffing; Thomas R Campion; Terrie R Wheeler; Curtis L Cole
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9.  Phenotype Analysis of Early Risk Factors from Electronic Medical Records Improves Image-Derived Diagnostic Classifiers for Optic Nerve Pathology.

Authors:  Shikha Chaganti; Kunal P Nabar; Katrina M Nelson; Louise A Mawn; Bennett A Landman
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10.  Automating the Determination of Prostate Cancer Risk Strata From Electronic Medical Records.

Authors:  Justin R Gregg; Maximilian Lang; Lucy L Wang; Matthew J Resnick; Sandeep K Jain; Jeremy L Warner; Daniel A Barocas
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