Literature DB >> 24521852

Automated segmentation and shape characterization of volumetric data.

Vitaly L Galinsky1, Lawrence R Frank2.   

Abstract

Characterization of complex shapes embedded within volumetric data is an important step in a wide range of applications. Standard approaches to this problem employ surface-based methods that require inefficient, time consuming, and error prone steps of surface segmentation and inflation to satisfy the uniqueness or stability of subsequent surface fitting algorithms. Here we present a novel method based on a spherical wave decomposition (SWD) of the data that overcomes several of these limitations by directly analyzing the entire data volume, obviating the segmentation, inflation, and surface fitting steps, significantly reducing the computational time and eliminating topological errors while providing a more detailed quantitative description based upon a more complete theoretical framework of volumetric data. The method is demonstrated and compared to the current state-of-the-art neuroimaging methods for segmentation and characterization of volumetric magnetic resonance imaging data of the human brain.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Morphometry; Segmentation; Spherical harmonics; Spherical wave decomposition

Mesh:

Year:  2014        PMID: 24521852      PMCID: PMC4324567          DOI: 10.1016/j.neuroimage.2014.01.053

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  23 in total

Review 1.  Current methods in medical image segmentation.

Authors:  D L Pham; C Xu; J L Prince
Journal:  Annu Rev Biomed Eng       Date:  2000       Impact factor: 9.590

2.  Automatic segmentation of subcortical brain structures in MR images using information fusion.

Authors:  V Barra; J Y Boire
Journal:  IEEE Trans Med Imaging       Date:  2001-07       Impact factor: 10.048

3.  Segmentation of fat and muscle from MR images of the thigh by a possibilistic clustering algorithm.

Authors:  Vincent Barra; Jean-Yves Boire
Journal:  Comput Methods Programs Biomed       Date:  2002-06       Impact factor: 5.428

4.  Multispectral MR images segmentation based on fuzzy knowledge and modified seeded region growing.

Authors:  Geng-Cheng Lin; Wen-June Wang; Chung-Chia Kang; Chuin-Mu Wang
Journal:  Magn Reson Imaging       Date:  2011-11-30       Impact factor: 2.546

5.  Algorithms for characterizing brain metabolites in two-dimensional in vivo MR correlation spectroscopy.

Authors:  Daniel Cocuzzo; Alexander Lin; Saadallah Ramadan; Carolyn Mountford; Nirmal Keshava
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2011

6.  Parameter estimation and tissue segmentation from multispectral MR images.

Authors:  Z Liang; J R Macfall; D P Harrington
Journal:  IEEE Trans Med Imaging       Date:  1994       Impact factor: 10.048

7.  Evaluation of automated brain MR image segmentation and volumetry methods.

Authors:  Frederick Klauschen; Aaron Goldman; Vincent Barra; Andreas Meyer-Lindenberg; Arvid Lundervold
Journal:  Hum Brain Mapp       Date:  2009-04       Impact factor: 5.038

8.  Tensor-based cortical surface morphometry via weighted spherical harmonic representation.

Authors:  Moo K Chung; Kim M Dalton; Richard J Davidson
Journal:  IEEE Trans Med Imaging       Date:  2008-08       Impact factor: 10.048

9.  Automatic MRI 2D brain segmentation using graph searching technique.

Authors:  Valentina Pedoia; Elisabetta Binaghi
Journal:  Int J Numer Method Biomed Eng       Date:  2012-06-27       Impact factor: 2.747

10.  Recent binge drinking predicts smaller cerebellar volumes in adolescents.

Authors:  Krista M Lisdahl; Rachel Thayer; Lindsay M Squeglia; Tim M McQueeny; Susan F Tapert
Journal:  Psychiatry Res       Date:  2012-11-13       Impact factor: 3.222

View more
  13 in total

1.  Joint Estimation of Effective Brain Wave Activation Modes Using EEG/MEG Sensor Arrays and Multimodal MRI Volumes.

Authors:  Vitaly L Galinsky; Antigona Martinez; Martin P Paulus; Lawrence R Frank
Journal:  Neural Comput       Date:  2018-04-13       Impact factor: 2.026

2.  Symplectomorphic registration with phase space regularization by entropy spectrum pathways.

Authors:  Vitaly L Galinsky; Lawrence R Frank
Journal:  Magn Reson Med       Date:  2018-09-19       Impact factor: 4.668

3.  Universal theory of brain waves: from linear loops to nonlinear synchronized spiking and collective brain rhythms.

Authors:  Vitaly L Galinsky; Lawrence R Frank
Journal:  Phys Rev Res       Date:  2020-04-21

4.  A Unified Theory of Neuro-MRI Data Shows Scale-Free Nature of Connectivity Modes.

Authors:  Vitaly L Galinsky; Lawrence R Frank
Journal:  Neural Comput       Date:  2017-03-23       Impact factor: 2.026

5.  JEDI: Joint Estimation Diffusion Imaging of macroscopic and microscopic tissue properties.

Authors:  Lawrence R Frank; Benjamin Zahneisen; Vitaly L Galinsky
Journal:  Magn Reson Med       Date:  2020-01-09       Impact factor: 4.668

6.  Quantitative Classification of Cerebellar Foliation in Cartilaginous Fishes (Class: Chondrichthyes) Using Three-Dimensional Shape Analysis and Its Implications for Evolutionary Biology.

Authors:  Kara E Yopak; Vitaly L Galinsky; Rachel M Berquist; Lawrence R Frank
Journal:  Brain Behav Evol       Date:  2016-07-23       Impact factor: 1.808

7.  Brain Waves: Emergence of Localized, Persistent, Weakly Evanescent Cortical Loops.

Authors:  Vitaly L Galinsky; Lawrence R Frank
Journal:  J Cogn Neurosci       Date:  2020-07-21       Impact factor: 3.225

8.  Simultaneous multi-scale diffusion estimation and tractography guided by entropy spectrum pathways.

Authors:  Vitaly L Galinsky; Lawrence R Frank
Journal:  IEEE Trans Med Imaging       Date:  2014-12-18       Impact factor: 10.048

9.  The coelacanth rostral organ is a unique low-resolution electro-detector that facilitates the feeding strike.

Authors:  Rachel M Berquist; Vitaly L Galinsky; Stephen M Kajiura; Lawrence R Frank
Journal:  Sci Rep       Date:  2015-03-11       Impact factor: 4.379

Review 10.  Methodological challenges and analytic opportunities for modeling and interpreting Big Healthcare Data.

Authors:  Ivo D Dinov
Journal:  Gigascience       Date:  2016-02-25       Impact factor: 6.524

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.