Literature DB >> 25532167

Simultaneous multi-scale diffusion estimation and tractography guided by entropy spectrum pathways.

Vitaly L Galinsky, Lawrence R Frank.   

Abstract

We have developed a method for the simultaneous estimation of local diffusion and the global fiber tracts based upon the information entropy flow that computes the maximum entropy trajectories between locations and depends upon the global structure of the multi-dimensional and multi-modal diffusion field. Computation of the entropy spectrum pathways requires only solving a simple eigenvector problem for the probability distribution for which efficient numerical routines exist, and a straight forward integration of the probability conservation through ray tracing of the convective modes guided by a global structure of the entropy spectrum coupled with a small scale local diffusion. The intervoxel diffusion is sampled by multi b-shell multi q-angle diffusion weighted imaging data expanded in spherical waves. This novel approach to fiber tracking incorporates global information about multiple fiber crossings in every individual voxel and ranks it in the most scientifically rigorous way. This method has potential significance for a wide range of applications, including studies of brain connectivity.

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Year:  2014        PMID: 25532167      PMCID: PMC4417445          DOI: 10.1109/TMI.2014.2380812

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  50 in total

1.  Characterization of anisotropy in high angular resolution diffusion-weighted MRI.

Authors:  Lawrence R Frank
Journal:  Magn Reson Med       Date:  2002-06       Impact factor: 4.668

2.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity.

Authors:  David S Tuch; Timothy G Reese; Mette R Wiegell; Nikos Makris; John W Belliveau; Van J Wedeen
Journal:  Magn Reson Med       Date:  2002-10       Impact factor: 4.668

3.  A novel global tractography algorithm based on an adaptive spin glass model.

Authors:  Pierre Fillard; Cyril Poupon; Jean-François Mangin
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

Review 4.  Advances in functional and structural MR image analysis and implementation as FSL.

Authors:  Stephen M Smith; Mark Jenkinson; Mark W Woolrich; Christian F Beckmann; Timothy E J Behrens; Heidi Johansen-Berg; Peter R Bannister; Marilena De Luca; Ivana Drobnjak; David E Flitney; Rami K Niazy; James Saunders; John Vickers; Yongyue Zhang; Nicola De Stefano; J Michael Brady; Paul M Matthews
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

5.  Multiple q-shell diffusion propagator imaging.

Authors:  Maxime Descoteaux; Rachid Deriche; Denis Le Bihan; Jean-François Mangin; Cyril Poupon
Journal:  Med Image Anal       Date:  2010-07-14       Impact factor: 8.545

6.  Evaluation of fiber tracking from subsampled q-space data in diffusion spectrum imaging.

Authors:  Getaneh Bayu Tefera; Yuxiang Zhou; Vaibhav Juneja; Ponnada A Narayana
Journal:  Magn Reson Imaging       Date:  2013-04-19       Impact factor: 2.546

7.  Continuous diffusion signal, EAP and ODF estimation via Compressive Sensing in diffusion MRI.

Authors:  Sylvain L Merlet; Rachid Deriche
Journal:  Med Image Anal       Date:  2013-03-20       Impact factor: 8.545

8.  Effects of image reconstruction on fiber orientation mapping from multichannel diffusion MRI: reducing the noise floor using SENSE.

Authors:  S N Sotiropoulos; S Moeller; S Jbabdi; J Xu; J L Andersson; E J Auerbach; E Yacoub; D Feinberg; K Setsompop; L L Wald; T E J Behrens; K Ugurbil; C Lenglet
Journal:  Magn Reson Med       Date:  2013-02-07       Impact factor: 4.668

9.  Estimating distributed anatomical connectivity using fast marching methods and diffusion tensor imaging.

Authors:  Geoffrey J M Parker; Claudia A M Wheeler-Kingshott; Gareth J Barker
Journal:  IEEE Trans Med Imaging       Date:  2002-05       Impact factor: 10.048

10.  Multi-fiber tractography visualizations for diffusion MRI data.

Authors:  Sjoerd B Vos; Max A Viergever; Alexander Leemans
Journal:  PLoS One       Date:  2013-11-25       Impact factor: 3.240

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  11 in total

1.  Dynamic Multiscale Modes of Resting State Brain Activity Detected by Entropy Field Decomposition.

Authors:  Lawrence R Frank; Vitaly L Galinsky
Journal:  Neural Comput       Date:  2016-07-08       Impact factor: 2.026

2.  Joint Estimation of Effective Brain Wave Activation Modes Using EEG/MEG Sensor Arrays and Multimodal MRI Volumes.

Authors:  Vitaly L Galinsky; Antigona Martinez; Martin P Paulus; Lawrence R Frank
Journal:  Neural Comput       Date:  2018-04-13       Impact factor: 2.026

3.  Symplectomorphic registration with phase space regularization by entropy spectrum pathways.

Authors:  Vitaly L Galinsky; Lawrence R Frank
Journal:  Magn Reson Med       Date:  2018-09-19       Impact factor: 4.668

4.  Universal theory of brain waves: from linear loops to nonlinear synchronized spiking and collective brain rhythms.

Authors:  Vitaly L Galinsky; Lawrence R Frank
Journal:  Phys Rev Res       Date:  2020-04-21

5.  Brain connections derived from diffusion MRI tractography can be highly anatomically accurate-if we know where white matter pathways start, where they end, and where they do not go.

Authors:  Kurt G Schilling; Laurent Petit; Francois Rheault; Samuel Remedios; Carlo Pierpaoli; Adam W Anderson; Bennett A Landman; Maxime Descoteaux
Journal:  Brain Struct Funct       Date:  2020-08-20       Impact factor: 3.270

6.  A Unified Theory of Neuro-MRI Data Shows Scale-Free Nature of Connectivity Modes.

Authors:  Vitaly L Galinsky; Lawrence R Frank
Journal:  Neural Comput       Date:  2017-03-23       Impact factor: 2.026

7.  JEDI: Joint Estimation Diffusion Imaging of macroscopic and microscopic tissue properties.

Authors:  Lawrence R Frank; Benjamin Zahneisen; Vitaly L Galinsky
Journal:  Magn Reson Med       Date:  2020-01-09       Impact factor: 4.668

8.  The Lamellar Structure of the Brain Fiber Pathways.

Authors:  Vitaly L Galinsky; Lawrence R Frank
Journal:  Neural Comput       Date:  2016-09-14       Impact factor: 2.026

9.  Brain Waves: Emergence of Localized, Persistent, Weakly Evanescent Cortical Loops.

Authors:  Vitaly L Galinsky; Lawrence R Frank
Journal:  J Cogn Neurosci       Date:  2020-07-21       Impact factor: 3.225

10.  White Matter Fiber Tractography Using Nonuniform Rational B-Splines Curve Fitting.

Authors:  Zhanxiong Wu; Dongnan Wu; Dong Xu
Journal:  J Healthc Eng       Date:  2018-11-18       Impact factor: 2.682

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