| Literature DB >> 24515532 |
Abstract
In 2012, a novel human coronavirus emerged and was tentatively named "Middle East respiratory syndrome coronavirus" (MERS-CoV). The high mortality rate of MERS-CoV focused attention on the ecology of the virus. It has been found that MERS-CoV belongs to the group C lineage of the genus Betacoronavirus. Coronavirus surveillance studies in different populations of bats have suggested that they are probable reservoirs for this novel virus, and phylogenetic analysis of both the spike (S1) and RNA-dependent RNA polymerase proteins of MERS-CoV have revealed that it is related to bat viruses. Recently, the MERS-CoV and its neutralizing antibodies were detected in dromedary camels. Despite the limited number of reported cases of person-to-person transmission, the rapid evolution of the virus poses a continuous threat to humans worldwide. This paper reviews the current state of knowledge regarding the virology, clinical spectrum, evolution, diagnosis and treatment of MERS-CoV infections.Entities:
Mesh:
Year: 2014 PMID: 24515532 PMCID: PMC7086939 DOI: 10.1007/s00705-014-1995-5
Source DB: PubMed Journal: Arch Virol ISSN: 0304-8608 Impact factor: 2.574
Multisequence alignment of the S1 protein and RdRp of MERS-CoV with those of different coronaviruses
Fig. 1Phylogenetic analysis of the S1 and RNA-dependent RNA polymerase of MERS-CoV in comparison to those of selected coronaviruses from the GenBank database. The betacoronavirus strains were selected to be representative of different lineages and were rooted to IBV-M41 Gammacoronavirus. The robustness of individual nodes of the tree was assessed using 1000 bootstrap replicates and bootstrap values 70 % and higher are indicated at key nodes
Oligonucleotides sequence of the primers and probes used for MERS-CoV
| RT-PCR assay | Primers | Reference |
|---|---|---|
| upE gene assay | upE-Fwd-GCAACGCGCGATTCAGTT | [ |
| upE-Rev-GCCTCTACACGGGACCCATA | ||
| FAM-CTCTTCACATAATCGCCCCGAGCTCG-TAMRA | ||
| ORF1b assay | ORF1b-Fwd-TTCGATGTTGAGGGTGCTCAT | [ |
| ORF1b-Rev-TCACACCAGTTGAAAATCCTAATTG | ||
| FAM-CCCGTAATGCATGTGGCACCAATGT-TAMRA | ||
| ORF 1a assay | EMC-Orf1a-Fwd CCACTACTCCCATTTCGTCAG | [ |
| EMC-Orf1a-Rev CAGTATGTGTAGTGCGCATATAAGCA | ||
| EMCOrf1a-Prb FAM-TTGCAAATTGGCTTGCCCCCACT-TAMRA | ||
| NSeq assaya | EMC-SeqN-Fwd CCTTCGGTACAGTGGAGCCA | [ |
| EMC-SeqN-Rev GATGGGGTTGCCAAACACAAAC | ||
| EMC-SeqN-Fnest TGACCCAAAGAATCCCAACTAC | ||
| RdRpSeq assayb | RdRpSeq-Fwd TGCTATWAGTGCTAAGAATAGRGC | [ |
| RdRpSeq-Rev GCATWGCNCWGTCACACTTAGG | ||
| RdRpSeq-Rnest CACTTAGGRTARTCCCAWCCCA |
The second round was only done if no product was visible by agarose gel electrophoresis after the first round
aFragment size: first round, 306-312 bp (including primers); second round, 279-285 bp (including primers)
bFragment size: first round, 242 bp (including primers); second round, 228 bp (including primers)